BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125479.4 - phase: 0
(110 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC224862 similar to UP|Q6KAW0 (Q6KAW0) Nod26-like major intrinsi... 150 1e-37
TC223040 similar to UP|NI51_ARATH (Q9SV84) Probable aquaporin NI... 107 9e-25
TC218108 UP|NO26_SOYBN (P08995) Nodulin-26 (N-26), complete 105 2e-24
TC206489 similar to UP|Q9XGG7 (Q9XGG7) Nodulin26-like major intr... 103 2e-23
TC211148 similar to UP|Q6QIL2 (Q6QIL2) NIP2, partial (58%) 100 1e-22
CD410957 weakly similar to GP|13447787|gb| NOD26-like membrane i... 95 4e-21
TC204517 similar to UP|Q39800 (Q39800) Delta-tonoplast intrinsic... 67 1e-12
TC204519 similar to UP|Q39800 (Q39800) Delta-tonoplast intrinsic... 67 1e-12
TC204518 similar to UP|O81186 (O81186) Aquaporin, partial (50%) 67 1e-12
TC224822 similar to UP|TIP2_TOBAC (P24422) Probable aquaporin TI... 66 2e-12
BI471474 similar to GP|4884870|gb| water channel protein MipL {M... 66 2e-12
TC230493 similar to UP|Q70IJ2 (Q70IJ2) Low affinity calcium tran... 66 3e-12
TC224823 similar to UP|TIP1_TOBAC (P21653) Probable aquaporin TI... 65 6e-12
TC218190 similar to UP|TIPA_PHAVU (P23958) Probable aquaporin TI... 59 3e-10
TC209441 UP|Q39883 (Q39883) Nodulin-26, partial (98%) 57 1e-09
TC224715 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%) 55 4e-09
TC224727 Glycine max disease resistance-like KR9 pseudogene, par... 55 5e-09
TC219739 similar to UP|TIPA_PHAVU (P23958) Probable aquaporin TI... 55 7e-09
TC224779 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (79%) 55 7e-09
TC214748 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%) 55 7e-09
>TC224862 similar to UP|Q6KAW0 (Q6KAW0) Nod26-like major intrinsic protein,
partial (79%)
Length = 1192
Score = 150 bits (378), Expect = 1e-37
Identities = 77/109 (70%), Positives = 88/109 (80%)
Frame = +1
Query: 1 MVFISTAVATDSKATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGI 60
MVFIS AVATDS ATG+L+GVAVGSSV IASIVAGPISGGSMNPARTLGPAIATS YKG+
Sbjct: 658 MVFISMAVATDSNATGQLSGVAVGSSVCIASIVAGPISGGSMNPARTLGPAIATSYYKGL 837
Query: 61 WIYMVGPITGALLGAWSYVVIQETDHKQDLATSQSPLSVKIHNEMNGIE 109
W+Y VGPITGA+L AWSY VI++T+H S S +S K+ + G E
Sbjct: 838 WVYFVGPITGAVLAAWSYNVIRDTEH-PGFPISLSSISSKVRQSIGGTE 981
Score = 31.6 bits (70), Expect = 0.060
Identities = 24/83 (28%), Positives = 40/83 (47%), Gaps = 6/83 (7%)
Frame = +1
Query: 1 MVFISTAVATDSKATGEL-----AGVAVGSSVTIASIVAGPISGGSMNPARTLG-PAIAT 54
+VF+ + A SK + A +A G VT+ G ISG MNPA +L A+
Sbjct: 310 LVFVGSGSAGLSKIDESMVSKLGASLAGGLIVTVMIYSIGHISGAHMNPAVSLAFTAVRH 489
Query: 55 SSYKGIWIYMVGPITGALLGAWS 77
+ + Y+ +TGA+ +++
Sbjct: 490 LPWPQLPFYVAAQLTGAISASYT 558
>TC223040 similar to UP|NI51_ARATH (Q9SV84) Probable aquaporin NIP5.1
(NOD26-like intrinsic protein 5.1) (Nodulin-26-like
major intrinsic protein 6) (AtNLM6) (NLM6 protein)
(NodLikeMip6), partial (56%)
Length = 869
Score = 107 bits (267), Expect = 9e-25
Identities = 48/89 (53%), Positives = 68/89 (75%)
Frame = +1
Query: 1 MVFISTAVATDSKATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGI 60
++F+ TAVATD++A GELAG+AVG++V + +++GP SGGSMNP RTLGPA+A +YK I
Sbjct: 217 LLFVVTAVATDTRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHI 396
Query: 61 WIYMVGPITGALLGAWSYVVIQETDHKQD 89
WIY+V P GAL GA Y +++ D + +
Sbjct: 397 WIYLVAPTLGALAGAGVYTLVKLRDEEAE 483
>TC218108 UP|NO26_SOYBN (P08995) Nodulin-26 (N-26), complete
Length = 1122
Score = 105 bits (263), Expect = 2e-24
Identities = 43/85 (50%), Positives = 65/85 (75%)
Frame = +3
Query: 1 MVFISTAVATDSKATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGI 60
++F+ VATD++A GELAG+A+GS++ + I+ GP++G SMNPAR+LGPA Y+GI
Sbjct: 591 LMFVICGVATDNRAVGELAGIAIGSTLLLNVIIGGPVTGASMNPARSLGPAFVHGEYEGI 770
Query: 61 WIYMVGPITGALLGAWSYVVIQETD 85
WIY++ P+ GA+ GAW Y +++ TD
Sbjct: 771 WIYLLAPVVGAIAGAWVYNIVRYTD 845
Score = 30.0 bits (66), Expect = 0.17
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +3
Query: 20 GVAV--GSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGIWI--YMVGPITGALLGA 75
G+A+ G +T+ G ISGG NPA T+ A +T + I + Y+V + G++L +
Sbjct: 306 GIAIVWGLVLTVLVYTVGHISGGHFNPAVTIAFA-STRRFPLIQVPAYVVAQLLGSILAS 482
Query: 76 WSYVVIQETDHKQ 88
+ ++ +H Q
Sbjct: 483 GTLRLLFMGNHDQ 521
>TC206489 similar to UP|Q9XGG7 (Q9XGG7) Nodulin26-like major intrinsic
protein, partial (86%)
Length = 1169
Score = 103 bits (256), Expect = 2e-23
Identities = 47/85 (55%), Positives = 65/85 (76%)
Frame = +1
Query: 1 MVFISTAVATDSKATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGI 60
++F+ + VATD++A GELAG+AVGS+V + + AGPI+G SMNPAR+LGPAI Y+GI
Sbjct: 601 LMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHHEYRGI 780
Query: 61 WIYMVGPITGALLGAWSYVVIQETD 85
WIY+V P GA+ G W+Y I+ T+
Sbjct: 781 WIYLVSPTLGAVAGTWAYNFIRYTN 855
Score = 27.7 bits (60), Expect = 0.86
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Frame = +1
Query: 5 STAVATDSKATGELAGVAVGSSVTIASIV--AGPISGGSMNPARTLGPAIATS-SYKGIW 61
S V D G+++ +T+ +V G ISG NPA T+ A K +
Sbjct: 271 SVVVNLDKDKVVTQPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHATTKRFPLKQVP 450
Query: 62 IYMVGPITGALL--GAWSYVVIQETDHKQDLATSQSPL 97
Y++ + GA L G + + DH S S L
Sbjct: 451 AYVIAQVVGATLASGTLRLIFNGKNDHFAGTLPSGSDL 564
>TC211148 similar to UP|Q6QIL2 (Q6QIL2) NIP2, partial (58%)
Length = 587
Score = 100 bits (248), Expect = 1e-22
Identities = 46/85 (54%), Positives = 62/85 (72%)
Frame = +2
Query: 1 MVFISTAVATDSKATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGI 60
++F+ + VATD +A GELA +AVGS+V + + AGPI+G SMNPAR +GPAI + Y+GI
Sbjct: 185 LMFVISGVATDDRAIGELAVIAVGSTVLLNVMFAGPITGASMNPARNIGPAILHNEYRGI 364
Query: 61 WIYMVGPITGALLGAWSYVVIQETD 85
WIY+V P GA+ G W Y I+ TD
Sbjct: 365 WIYIVSPTLGAVAGTWVYNTIRYTD 439
>CD410957 weakly similar to GP|13447787|gb| NOD26-like membrane integral
protein ZmNIP2-1 {Zea mays}, partial (16%)
Length = 617
Score = 95.1 bits (235), Expect = 4e-21
Identities = 46/74 (62%), Positives = 56/74 (75%)
Frame = -1
Query: 36 PISGGSMNPARTLGPAIATSSYKGIWIYMVGPITGALLGAWSYVVIQETDHKQDLATSQS 95
PISGGSMNPARTLGPAIATS YKG+W+Y VGPITGA+L AWSY VI++T+ + S S
Sbjct: 503 PISGGSMNPARTLGPAIATSYYKGLWVYFVGPITGAVLAAWSYNVIRDTE-QPGFPISLS 327
Query: 96 PLSVKIHNEMNGIE 109
+S K+ + G E
Sbjct: 326 SISSKVRQSIGGTE 285
>TC204517 similar to UP|Q39800 (Q39800) Delta-tonoplast intrinsic protein,
complete
Length = 1016
Score = 67.0 bits (162), Expect = 1e-12
Identities = 37/89 (41%), Positives = 50/89 (55%), Gaps = 3/89 (3%)
Frame = +3
Query: 1 MVFISTAVATDSK--ATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK 58
+V+ A A D K + G +A +A+G V + AGP SGGSMNPAR+ GPA+ + +
Sbjct: 525 LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFH 704
Query: 59 GIWIYMVGPITGALLGAWSY-VVIQETDH 86
WIY VGP+ G L Y V +DH
Sbjct: 705 DNWIYWVGPLIGGGLAGLIYGNVFIRSDH 791
Score = 26.9 bits (58), Expect = 1.5
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 18 LAGVAV--GSSVTIASIVAGPISGGSMNPARTLGPAI 52
L VA+ G ++ +A V ISGG +NPA T G A+
Sbjct: 234 LLAVAICHGFALFVAVSVGANISGGHVNPAVTFGLAL 344
>TC204519 similar to UP|Q39800 (Q39800) Delta-tonoplast intrinsic protein,
partial (97%)
Length = 989
Score = 67.0 bits (162), Expect = 1e-12
Identities = 37/94 (39%), Positives = 50/94 (52%), Gaps = 2/94 (2%)
Frame = +1
Query: 1 MVFISTAVATDSK--ATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK 58
+V+ A A D K + G +A +A+G V + AGP SGGSMNPAR+ GPA+ + +
Sbjct: 514 LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFH 693
Query: 59 GIWIYMVGPITGALLGAWSYVVIQETDHKQDLAT 92
WIY VGP+ G L Y + LAT
Sbjct: 694 DNWIYWVGPLIGGGLAGLIYTYAFIPTNHAPLAT 795
Score = 27.7 bits (60), Expect = 0.86
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +1
Query: 18 LAGVAV--GSSVTIASIVAGPISGGSMNPARTLGPAIA--TSSYKGI--WI-YMVGPITG 70
L VA+ G ++ +A V ISGG +NPA T G A+ + G+ WI ++G I
Sbjct: 226 LVAVAICHGFALFVAVSVGANISGGHVNPAVTFGLALGGHITILTGLFYWIAQLLGSIVA 405
Query: 71 ALL 73
+LL
Sbjct: 406 SLL 414
>TC204518 similar to UP|O81186 (O81186) Aquaporin, partial (50%)
Length = 713
Score = 67.0 bits (162), Expect = 1e-12
Identities = 37/89 (41%), Positives = 50/89 (55%), Gaps = 3/89 (3%)
Frame = +3
Query: 1 MVFISTAVATDSK--ATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK 58
+V+ A A D K + G +A +A+G V + AGP SGGSMNPAR+ GPA+ + +
Sbjct: 96 LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFH 275
Query: 59 GIWIYMVGPITGALLGAWSY-VVIQETDH 86
WIY VGP+ G L Y V +DH
Sbjct: 276 DNWIYWVGPLIGGGLAGLIYGNVFIRSDH 362
>TC224822 similar to UP|TIP2_TOBAC (P24422) Probable aquaporin TIP-type
RB7-18C (Tonoplast intrinsic protein, root-specific
RB7-18C) (TobRB7) (RT-TIP), partial (96%)
Length = 1202
Score = 66.2 bits (160), Expect = 2e-12
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +1
Query: 1 MVFISTAVATDSK--ATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK 58
+V+ A A D K + G +A +A+G V + AGP SGGSMNPAR+ GPA+ + +
Sbjct: 553 LVYTVYATAADPKKGSLGIIAPIAIGFVVGANILAAGPFSGGSMNPARSFGPAVVSGDFA 732
Query: 59 GIWIYMVGPITGALLGAWSY 78
WIY VGP+ G L Y
Sbjct: 733 ANWIYWVGPLIGGGLAGLIY 792
Score = 27.7 bits (60), Expect = 0.86
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 15 TGELA-GVAVGSSVTIASIVAGPISGGSMNPARTLGPAI 52
TG +A VA ++ + VA ISGG +NPA T G AI
Sbjct: 259 TGLVAVAVAHAFALFVGVSVAANISGGHLNPAVTFGLAI 375
>BI471474 similar to GP|4884870|gb| water channel protein MipL
{Mesembryanthemum crystallinum}, partial (51%)
Length = 421
Score = 66.2 bits (160), Expect = 2e-12
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +1
Query: 1 MVFISTAVATDSK--ATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK 58
+V+ A A D K + G +A +A+G V + AGP SGGSMNPAR+ GPA+ + +
Sbjct: 157 LVYTVYATAADPKKGSLGIIAPIAIGFVVGANILAAGPFSGGSMNPARSFGPAVVSGDFA 336
Query: 59 GIWIYMVGPITGALLGAWSY 78
WIY VGP+ G L Y
Sbjct: 337 ANWIYWVGPLIGGGLAGLIY 396
Score = 26.6 bits (57), Expect = 1.9
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 33 VAGPISGGSMNPARTLGPAI 52
VA ISGG +NPA T G AI
Sbjct: 98 VAANISGGHLNPAVTFGLAI 39
>TC230493 similar to UP|Q70IJ2 (Q70IJ2) Low affinity calcium transporter CAX2
(Fragment), partial (21%)
Length = 855
Score = 65.9 bits (159), Expect = 3e-12
Identities = 32/59 (54%), Positives = 42/59 (70%), Gaps = 2/59 (3%)
Frame = +1
Query: 38 SGGSMNPARTLGPAIATSSYKGIWIYMVGPITGALLGAWSYVVIQETDH--KQDLATSQ 94
+G SMN ARTLGPAIA +YKG+WIY+ PI G+L GA +Y V++ DH K D T++
Sbjct: 316 TGSSMNLARTLGPAIAAHNYKGMWIYLTAPILGSLCGAGAYTVLKLPDHIRKSDSNTAR 492
>TC224823 similar to UP|TIP1_TOBAC (P21653) Probable aquaporin TIP-type
RB7-5A (Tonoplast intrinsic protein, root-specific
RB7-5A) (TobRB7) (RT-TIP), partial (96%)
Length = 1083
Score = 64.7 bits (156), Expect = 6e-12
Identities = 34/80 (42%), Positives = 45/80 (55%), Gaps = 2/80 (2%)
Frame = +2
Query: 1 MVFISTAVATDSK--ATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK 58
+V+ A A D K + G +A +A+G V + AGP SGGSMNPAR+ GPA+ +
Sbjct: 488 LVYTVYATAVDPKKGSLGIIAPIAIGFVVGANILAAGPFSGGSMNPARSFGPAVVSGDLA 667
Query: 59 GIWIYMVGPITGALLGAWSY 78
WIY VGP+ G L Y
Sbjct: 668 ANWIYWVGPLIGGGLAGLIY 727
Score = 27.7 bits (60), Expect = 0.86
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 15 TGELA-GVAVGSSVTIASIVAGPISGGSMNPARTLGPAI 52
TG +A VA ++ + VA ISGG +NPA T G AI
Sbjct: 194 TGLVAVAVAHAFALFVGVSVAANISGGHLNPAVTFGLAI 310
>TC218190 similar to UP|TIPA_PHAVU (P23958) Probable aquaporin TIP-type alpha
(Tonoplast intrinsic protein alpha) (Alpha TIP), partial
(52%)
Length = 599
Score = 58.9 bits (141), Expect = 3e-10
Identities = 34/90 (37%), Positives = 47/90 (51%), Gaps = 3/90 (3%)
Frame = +2
Query: 5 STAVATDSKATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGIWIYM 64
+TA+ + G +A +A+G V + GP G MNPAR GPA+ + WI+
Sbjct: 146 ATAIDPKRGSIGSIAPLAIGFVVGANILAGGPFDGACMNPARAFGPAMVGWRWHYHWIFW 325
Query: 65 VGPITGALLGA--WSYVVI-QETDHKQDLA 91
VGP GA L A + YV++ E H Q LA
Sbjct: 326 VGPFIGAALAALLYEYVMVPNEPPHHQPLA 415
>TC209441 UP|Q39883 (Q39883) Nodulin-26, partial (98%)
Length = 982
Score = 57.0 bits (136), Expect = 1e-09
Identities = 32/92 (34%), Positives = 47/92 (50%), Gaps = 4/92 (4%)
Frame = +2
Query: 1 MVFISTAVATDSKA--TGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK 58
+V+ A A D K G +A +A+G V + G G SMNPA + GPA+ + ++
Sbjct: 536 LVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWS 715
Query: 59 GIWIYMVGPITGALLGAWSYVV--IQETDHKQ 88
W+Y VGP GA + A Y + I H+Q
Sbjct: 716 NHWVYWVGPFAGAAIAAIVYEIFFISPNTHEQ 811
Score = 25.0 bits (53), Expect = 5.6
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 19 AGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIA--TSSYKGIWIYMVGPITGALL 73
A ++ ++ +A V ISGG +NPA T G + + ++ I +Y + + G+++
Sbjct: 254 ASLSHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLFRSI-LYWIAQLLGSVV 421
>TC224715 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%)
Length = 1270
Score = 55.5 bits (132), Expect = 4e-09
Identities = 31/97 (31%), Positives = 50/97 (50%), Gaps = 2/97 (2%)
Frame = +1
Query: 1 MVFISTAVATDSKA--TGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK 58
+V+ A A D K G +A +A+G V ++ G SG +MNPA T GPA+ + ++
Sbjct: 961 LVYTVYATAIDPKKGNLGIIAPIAIGFIVGANILLGGAFSGAAMNPAVTFGPAVVSWTWT 1140
Query: 59 GIWIYMVGPITGALLGAWSYVVIQETDHKQDLATSQS 95
WIY GP+ G + Y V+ + + L T+ +
Sbjct: 1141 NHWIYWAGPLIGGGIAGLVYEVVFISHTHEQLPTTDT 1251
Score = 29.6 bits (65), Expect = 0.23
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1
Query: 19 AGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIA--TSSYKGIWIYMVGPITGALLGA 75
A +A ++ +A V ISGG +NPA T G + + +GI +Y++ + G+++ +
Sbjct: 682 ASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITFLRGI-VYVIAQLLGSIVAS 855
>TC224727 Glycine max disease resistance-like KR9 pseudogene, partial sequence
Length = 1638
Score = 55.1 bits (131), Expect = 5e-09
Identities = 31/95 (32%), Positives = 49/95 (50%), Gaps = 2/95 (2%)
Frame = +1
Query: 1 MVFISTAVATDSKA--TGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK 58
+V+ A A D K G +A +A+G V ++ G SG +MNPA T GPA+ + ++
Sbjct: 958 LVYTVYATAIDPKKGNLGIIAPIAIGFIVGANILLGGAFSGAAMNPAVTFGPAVVSWTWT 1137
Query: 59 GIWIYMVGPITGALLGAWSYVVIQETDHKQDLATS 93
WIY GP+ G + Y V+ + + L T+
Sbjct: 1138 NHWIYWAGPLIGGGIAGLVYEVVFISHTHEQLPTT 1242
>TC219739 similar to UP|TIPA_PHAVU (P23958) Probable aquaporin TIP-type alpha
(Tonoplast intrinsic protein alpha) (Alpha TIP), partial
(66%)
Length = 802
Score = 54.7 bits (130), Expect = 7e-09
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +1
Query: 6 TAVATDSKATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGIWIYMV 65
TA+ A +A +A+G V +V GP G MNPA GP++ + WI+ V
Sbjct: 274 TAIDPKRGAVSNIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHQHWIFWV 453
Query: 66 GPITGALLGA--WSYVVI 81
GP+ GA L A + YVVI
Sbjct: 454 GPLIGAALAALVYEYVVI 507
>TC224779 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (79%)
Length = 897
Score = 54.7 bits (130), Expect = 7e-09
Identities = 29/83 (34%), Positives = 44/83 (52%), Gaps = 2/83 (2%)
Frame = +3
Query: 1 MVFISTAVATDSKA--TGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK 58
+V+ A A D K G +A +A+G V ++ G SG +MNPA T GPA+ + ++
Sbjct: 405 LVYTVYATAVDPKKGNLGIIAPIAIGFIVGANILLGGAFSGAAMNPAVTFGPAVVSWTWT 584
Query: 59 GIWIYMVGPITGALLGAWSYVVI 81
WIY GP+ G + Y V+
Sbjct: 585 NHWIYWAGPLIGGGIAGLIYEVV 653
>TC214748 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%)
Length = 1254
Score = 54.7 bits (130), Expect = 7e-09
Identities = 29/83 (34%), Positives = 44/83 (52%), Gaps = 2/83 (2%)
Frame = +3
Query: 1 MVFISTAVATDSKA--TGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK 58
+V+ A A D K G +A +A+G V ++ G SG +MNPA T GPA+ + ++
Sbjct: 588 LVYTVYATAVDPKKGNLGIIAPIAIGFIVGANILLGGAFSGAAMNPAVTFGPAVVSWTWT 767
Query: 59 GIWIYMVGPITGALLGAWSYVVI 81
WIY GP+ G + Y V+
Sbjct: 768 NHWIYWAGPLIGGGIAGLIYEVV 836
Score = 29.6 bits (65), Expect = 0.23
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 19 AGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIA--TSSYKGIWIYMVGPITGALLGA 75
A +A ++ +A V ISGG +NPA T G + + +GI +Y++ + G+++ +
Sbjct: 309 ASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGI-VYVIAQLLGSIVAS 482
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,762,109
Number of Sequences: 63676
Number of extensions: 40226
Number of successful extensions: 290
Number of sequences better than 10.0: 133
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of query: 110
length of database: 12,639,632
effective HSP length: 86
effective length of query: 24
effective length of database: 7,163,496
effective search space: 171923904
effective search space used: 171923904
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC125479.4