BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125479.3 - phase: 0
(68 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205877 similar to UP|Q9FJJ6 (Q9FJJ6) Arabidopsis thaliana geno... 42 8e-05
BF066654 38 0.001
TC234991 similar to UP|Q6YTC8 (Q6YTC8) Zinc finger (C3HC4-type R... 38 0.001
BM188726 37 0.001
BU082747 35 0.010
CA936370 33 0.028
TC221559 similar to UP|Q9XF50 (Q9XF50) PIT1, partial (26%) 30 0.31
TC213860 similar to UP|Q8LGT8 (Q8LGT8) Phosphoglycerate mutase-l... 27 1.5
BF423850 27 2.0
TC230796 similar to UP|Q8X0Y2 (Q8X0Y2) Probable cell division co... 26 3.5
TC222245 26 4.5
TC234386 similar to PIR|T48087|T48087 transport inhibitor respon... 25 5.9
TC228739 weakly similar to UP|P93408 (P93408) Mitochondrial ribo... 25 5.9
>TC205877 similar to UP|Q9FJJ6 (Q9FJJ6) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K19B1 (AT5g62460/K19B1_7),
partial (60%)
Length = 1321
Score = 41.6 bits (96), Expect = 8e-05
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +2
Query: 31 KMGECRYCHEEEWIYRLEAPCRCDGSLK 58
+M ECR C EE+ + LE PC C GSLK
Sbjct: 389 QMAECRICQEEDGVSNLETPCACSGSLK 472
>BF066654
Length = 394
Score = 37.7 bits (86), Expect = 0.001
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 34 ECRYCHEEEWIYRLEAPCRCDGSLK 58
ECR C EE+ +EAPC C+G+LK
Sbjct: 143 ECRICQEEDQAQAMEAPCSCNGTLK 217
>TC234991 similar to UP|Q6YTC8 (Q6YTC8) Zinc finger (C3HC4-type RING
finger)-like protein, partial (19%)
Length = 524
Score = 37.7 bits (86), Expect = 0.001
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -1
Query: 34 ECRYCHEEEWIYRLEAPCRCDGSLK 58
ECR C EE+ +EAPC C+G+LK
Sbjct: 221 ECRICQEEDLAQAMEAPCSCNGTLK 147
>BM188726
Length = 422
Score = 37.4 bits (85), Expect = 0.001
Identities = 15/43 (34%), Positives = 25/43 (57%)
Frame = +2
Query: 16 IEELSAALREQLVIGKMGECRYCHEEEWIYRLEAPCRCDGSLK 58
++E E+ + +M ECR C E++ + L+ PC C G+LK
Sbjct: 188 VKECDTLEEEKEDLIQMVECRICQEDDTLQNLDIPCACSGTLK 316
>BU082747
Length = 440
Score = 34.7 bits (78), Expect = 0.010
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 34 ECRYCHEEEWIYRLEAPCRCDGSLKV 59
+CR CH+E+ ++ PC C G+LKV
Sbjct: 239 QCRICHDEDEESNMDTPCSCCGTLKV 316
>CA936370
Length = 435
Score = 33.1 bits (74), Expect = 0.028
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 34 ECRYCHEEEWIYRLEAPCRCDGSLK 58
+CR CH+E+ ++ PC C G+LK
Sbjct: 233 QCRICHDEDEESNMDTPCSCCGTLK 307
>TC221559 similar to UP|Q9XF50 (Q9XF50) PIT1, partial (26%)
Length = 789
Score = 29.6 bits (65), Expect = 0.31
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +2
Query: 38 CHEEEW--IYRLEAPCRCDGSLK 58
CHEEE+ LEAPC C G++K
Sbjct: 5 CHEEEFESSKTLEAPCACSGTVK 73
>TC213860 similar to UP|Q8LGT8 (Q8LGT8) Phosphoglycerate mutase-like protein,
partial (15%)
Length = 690
Score = 27.3 bits (59), Expect = 1.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 40 EEEWIYRLEAPCRCDGSLKVFQFYLK 65
E+ WI+ L C C G K + FYLK
Sbjct: 443 EK*WIWLLLLVCMCSGPFKHWFFYLK 520
>BF423850
Length = 322
Score = 26.9 bits (58), Expect = 2.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 32 MGECRYCHEEEWIYRLEAPCRCDGSLKV 59
M EC C ++ + ++ PC C G+ K+
Sbjct: 23 MRECTICQ*DDSLQNVDVPCACSGT*KL 106
>TC230796 similar to UP|Q8X0Y2 (Q8X0Y2) Probable cell division control
protein nda4, partial (21%)
Length = 1174
Score = 26.2 bits (56), Expect = 3.5
Identities = 11/23 (47%), Positives = 13/23 (55%)
Frame = +3
Query: 30 GKMGECRYCHEEEWIYRLEAPCR 52
G+MGE R EE W+ R CR
Sbjct: 381 GRMGESRTLKEENWLKRYLQYCR 449
>TC222245
Length = 316
Score = 25.8 bits (55), Expect = 4.5
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 12/41 (29%)
Frame = -2
Query: 32 MGECRYCHEEEW------------IYRLEAPCRCDGSLKVF 60
MGE + H+EE IYR CRC G+L+ +
Sbjct: 150 MGEAKESHDEEHKPIFVIDSTLALIYRKVIHCRCSGTLEPY 28
>TC234386 similar to PIR|T48087|T48087 transport inhibitor response protein
TIR1 [imported] - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (14%)
Length = 467
Score = 25.4 bits (54), Expect = 5.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 3 MGDEITVHQVEIPIEELSAALREQL 27
+GD+I V +V +P E + LRE L
Sbjct: 456 IGDQIEVRKVRLPFERNGSHLREPL 382
>TC228739 weakly similar to UP|P93408 (P93408) Mitochondrial ribosomal
protein S11 (Nuclear encoded), partial (39%)
Length = 1290
Score = 25.4 bits (54), Expect = 5.9
Identities = 9/21 (42%), Positives = 11/21 (51%)
Frame = +2
Query: 38 CHEEEWIYRLEAPCRCDGSLK 58
CHE EWIY C+ L+
Sbjct: 857 CHESEWIYSF*EKKECNNELE 919
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.140 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,966,543
Number of Sequences: 63676
Number of extensions: 49364
Number of successful extensions: 341
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of query: 68
length of database: 12,639,632
effective HSP length: 44
effective length of query: 24
effective length of database: 9,837,888
effective search space: 236109312
effective search space used: 236109312
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)
Medicago: description of AC125479.3