TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC125477.1 + phase: 2 /pseudo/partial
         (358 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC227252 similar to UP|Q9ZPI1 (Q9ZPI1) Lysyl-tRNA synthetase  , ...   499  e-141
TC207073 similar to UP|Q9LJE2 (Q9LJE2) Lysyl-tRNA synthetase, pa...   193  9e-50
TC227253 similar to UP|Q9ZPI1 (Q9ZPI1) Lysyl-tRNA synthetase  , ...   144  5e-35
BI942627 homologue to GP|28851946|gb lysyl-tRNA synthetase {Pseu...    56  2e-08
TC224972 similar to UP|Q9M084 (Q9M084) Aspartate--tRNA ligase-li...    44  9e-05
TC208505                                                               28  4.9
AW704439                                                               28  6.4

>TC227252 similar to UP|Q9ZPI1 (Q9ZPI1) Lysyl-tRNA synthetase  , partial
           (59%)
          Length = 1524

 Score =  499 bits (1284), Expect = e-141
 Identities = 250/334 (74%), Positives = 283/334 (83%), Gaps = 27/334 (8%)
 Frame = +2

Query: 52  LMPDQKSTAAAAANNANLMES*NIHFKGS---------------------------DIRE 84
           +MP QKS  AAAA+NANL    N    GS                           ++RE
Sbjct: 2   MMPRQKS--AAAADNANLKR--NPWVPGSTRNPETYILKDQETRYRLRHLDLMLNPEVRE 169

Query: 85  IFHTRNRIISYIQRHLDDLDFMEVETPMMNKIAGGAAARPFVTHHNELDLKLFMRIAPEL 144
           IF TR++IISYI+R LDDLDF+EVETPMMN IAGGAAARPFVTHHN+L+++LFMRIAPEL
Sbjct: 170 IFKTRSKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPEL 349

Query: 145 YLKQLVVGGMERVYEIGKQFRNEDIDLTHNPEFTTCEFYMAYNEYNDLMEITERMLSGLV 204
           YLK+LVVGG++RVYEIGKQFRNE IDLTHNPEFTTCEFYMAY +YNDLM+ITE+MLSG+V
Sbjct: 350 YLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMDITEQMLSGMV 529

Query: 205 QELTNGSYKIKYHANGVDKDPIEIDFTPPFRRIDMIEELESMAGLSIPKDLATDEANQYL 264
           +ELT GSYKIKYHA+G+DK+PIEIDFTPPFRRIDMI+ELE MAGLSIPKDL+++EANQYL
Sbjct: 530 KELTKGSYKIKYHADGIDKEPIEIDFTPPFRRIDMIDELEKMAGLSIPKDLSSEEANQYL 709

Query: 265 KNACLEYDIKCAPAQTTARLLDKLAGHFLEETCVNPTFIINHPEIMSPLAKWHRTKPGLT 324
           K+ACL+Y+IKC P +TTARLLDKL GHFLEETCVNPTFIINHPEIMSPLAKWHR+KPGLT
Sbjct: 710 KDACLKYEIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLT 889

Query: 325 ERFELIVNKLKLSNAYTELNDPVVQRQRFAEQLK 358
           ERFEL VNK +L NAYTELNDPVVQRQRFAEQLK
Sbjct: 890 ERFELFVNKHELCNAYTELNDPVVQRQRFAEQLK 991


>TC207073 similar to UP|Q9LJE2 (Q9LJE2) Lysyl-tRNA synthetase, partial (52%)
          Length = 1234

 Score =  193 bits (491), Expect = 9e-50
 Identities = 109/271 (40%), Positives = 159/271 (58%), Gaps = 9/271 (3%)
 Frame = +2

Query: 97  QRHLDDLDFMEVETPMMNKIAGGAAARPFVTHHNELDLKLFMRIAPELYLKQLVVGGMER 156
           +R +D L F+EVETP++   AGGA ARPF+T+HN L   L++RIA EL+LK+++VGG E+
Sbjct: 8   RRTMDSLGFVEVETPVLQGAAGGAEARPFITYHNSLGRDLYLRIATELHLKRMLVGGFEK 187

Query: 157 VYEIGKQFRNEDIDLTHNPEFTTCEFYMAYNEYNDLMEITERMLSGLVQELTNGSYKIKY 216
           VYEIG+ FRNE I   HNPEFTT E Y AY++Y  +M + E +++     + +G   I Y
Sbjct: 188 VYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTRCALAV-HGKLTIDY 364

Query: 217 HANGVDKDPIEIDFTPPFRRIDMIEELESMAG---------LSIPKDLATDEANQYLKNA 267
                    +EI    P+RR  M   ++  AG         L + K +  D   + L N 
Sbjct: 365 QG-------VEICLEKPWRRETMHNLVKETAGIDFNELANDLEVAKRVTLDTLGKNLDNK 523

Query: 268 CLEYDIKCAPAQTTARLLDKLAGHFLEETCVNPTFIINHPEIMSPLAKWHRTKPGLTERF 327
                  C   Q+   LL+++   F+E   + PTF++++P  +SPLAK HR   GLTERF
Sbjct: 524 DKGSIEAC---QSVGHLLNEVFESFVEPKLIQPTFVLDYPIEISPLAKPHRRSTGLTERF 694

Query: 328 ELIVNKLKLSNAYTELNDPVVQRQRFAEQLK 358
           EL +   +L NA++EL DP+ QR R  +Q++
Sbjct: 695 ELFICGRELGNAFSELTDPIDQRGRLEDQIR 787


>TC227253 similar to UP|Q9ZPI1 (Q9ZPI1) Lysyl-tRNA synthetase  , partial
           (19%)
          Length = 525

 Score =  144 bits (364), Expect = 5e-35
 Identities = 79/169 (46%), Positives = 109/169 (63%), Gaps = 25/169 (14%)
 Frame = +1

Query: 16  VERGDTVGVIGFPGKSEEGDLSIFPKTFTVLSHCLHLMPDQKSTAAAAANNANLMES*NI 75
           V+RGD VG+ GFP KS++G+LSIFPKTF ++SHCLH+MP QKS  AAAA+NANL ++  +
Sbjct: 10  VKRGDIVGITGFPRKSKKGELSIFPKTFVLMSHCLHMMPRQKS--AAAADNANLKKNPWV 183

Query: 76  H-------------------------FKGSDIREIFHTRNRIISYIQRHLDDLDFMEVET 110
                                         ++REIF TR++II YI+R  DDL F+E +T
Sbjct: 184 PRSTRNPETYILKDQETRYRLRHLDLMLNPEVREIFKTRSKIICYIRRSHDDLHFLEDKT 363

Query: 111 PMMNKIAGGAAARPFVTHHNELDLKLFMRIAPELYLKQLVVGGMERVYE 159
           PMMN IAGGAA R FVTHHN+ ++++ ++ AP+L   +    G+ER+ E
Sbjct: 364 PMMNIIAGGAAPRAFVTHHNDRNIRILIKSAPKLDRSEKEAEGLERLSE 510


>BI942627 homologue to GP|28851946|gb lysyl-tRNA synthetase {Pseudomonas
           syringae pv. tomato str. DC3000}, partial (27%)
          Length = 402

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 29/74 (39%), Positives = 46/74 (61%)
 Frame = +2

Query: 284 LLDKLAGHFLEETCVNPTFIINHPEIMSPLAKWHRTKPGLTERFELIVNKLKLSNAYTEL 343
           + ++L  H LE+    P FI  +P  +SPLA+ +   P +T+RFEL +   +++NAY+EL
Sbjct: 32  IFEELVEHKLEQ----PHFITEYPFEVSPLARRNDENPNVTDRFELFIGGREIANAYSEL 199

Query: 344 NDPVVQRQRFAEQL 357
           ND   Q +RF  Q+
Sbjct: 200 NDAEDQAERFQAQV 241


>TC224972 similar to UP|Q9M084 (Q9M084) Aspartate--tRNA ligase-like protein,
           partial (49%)
          Length = 1255

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
 Frame = +2

Query: 75  IHFKGSDIRE-----IFHTRNRIISYIQRHLDDLDFMEVETPMMNKIAGGAAARPFVTHH 129
           ++F+  D+R      IF  ++++ +  ++ L    F E+ TP +  IAG +     V   
Sbjct: 728 LNFRVLDVRTPANQGIFRIQSQVGNAFRQFLVSQGFCEIHTPKL--IAGSSEGGAAVFRL 901

Query: 130 NELDLKLFMRIAPELYLKQLVVGGMERVYEIGKQFRNEDIDLTHNP--EFTTCEFYMAYN 187
           +       +  +P+L+ +  + G   RV+EIG  FR ED   TH    EFT  +  M   
Sbjct: 902 DYKGQPACLAQSPQLHKQMSICGDFGRVFEIGPVFRAED-SYTHRHLCEFTGLDVEMEIK 1078

Query: 188 E-YNDLMEITER----MLSGLVQELTNGS 211
           + Y ++M+I +R    M   L Q L  GS
Sbjct: 1079KHYFEVMDIVDRLFVAMFDSLNQRL*EGS 1165


>TC208505 
          Length = 519

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 171 LTHNPEFTTCEFYMAY 186
           LTH+P+ +TC+FY  Y
Sbjct: 404 LTHDPQMSTCDFYSPY 357


>AW704439 
          Length = 238

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 164 FRNEDIDLTHNPEFTTCEFYMAYNEYNDLMEITERML 200
           FR+E++      EFT  +  M +  Y D++ + E ++
Sbjct: 65  FRDENLRADRQLEFTQLDMEMTFTPYEDMLTLNEELI 175


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,131,078
Number of Sequences: 63676
Number of extensions: 173896
Number of successful extensions: 722
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of query: 358
length of database: 12,639,632
effective HSP length: 98
effective length of query: 260
effective length of database: 6,399,384
effective search space: 1663839840
effective search space used: 1663839840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)