BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125368.9 + phase: 0
(216 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203292 homologue to UP|Q8W3J4 (Q8W3J4) Ras-related protein RAB... 413 e-116
TC203376 homologue to UP|Q41023 (Q41023) Small GTP-binding prote... 407 e-114
TC215026 homologue to UP|Q40219 (Q40219) RAB8E, partial (92%) 395 e-110
TC215024 homologue to GB|BAB08351.1|9757904|AB015475 Rab-type sm... 355 e-100
TC215025 homologue to GB|BAB08351.1|9757904|AB015475 Rab-type sm... 279 8e-76
TC227973 UP|Q39845 (Q39845) Small GTP-binding protein, complete 249 5e-67
TC203411 UP|Q41023 (Q41023) Small GTP-binding protein, partial (... 248 1e-66
TC206346 homologue to UP|Q08154 (Q08154) GTP-binding protein, co... 241 2e-64
TC225644 UP|Q40203 (Q40203) RAB1C, complete 240 3e-64
TC221792 UP|Q39861 (Q39861) GTP binding protein, complete 233 5e-62
TC216317 UP|Q43462 (Q43462) Rab7p protein, complete 231 1e-61
TC216318 homologue to UP|Q43462 (Q43462) Rab7p protein, complete 230 3e-61
TC215029 similar to UP|ARA3_ARATH (P28186) Ras-related protein A... 187 3e-48
TC214200 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein... 186 9e-48
TC214158 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein... 186 9e-48
TC205442 UP|Q40208 (Q40208) RAB2A, complete 185 2e-47
TC218982 homologue to UP|Q38922 (Q38922) ATGB2 (GTP-binding prot... 184 3e-47
TC206349 UP|P92963 (P92963) Rab2-like protein (GTP-binding RAB2A... 183 5e-47
TC216386 homologue to UP|RB1C_ARATH (O04486) Ras-related protein... 180 5e-46
TC217862 homologue to UP|Q08149 (Q08149) GTP-binding protein, co... 177 2e-45
>TC203292 homologue to UP|Q8W3J4 (Q8W3J4) Ras-related protein RAB8-1,
complete
Length = 1129
Score = 413 bits (1061), Expect = e-116
Identities = 208/216 (96%), Positives = 211/216 (97%)
Frame = +1
Query: 1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 145 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 324
Query: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNWIRNIEQHASDN
Sbjct: 325 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDN 504
Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVEEVFFSIARDIKQR
Sbjct: 505 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQR 684
Query: 181 LADTDSKSEPQTIKINQPDQGAGAAQAAQKSACCGS 216
LADTDSK+EPQTIKINQPDQ A AAQKSACCGS
Sbjct: 685 LADTDSKAEPQTIKINQPDQTATGGLAAQKSACCGS 792
>TC203376 homologue to UP|Q41023 (Q41023) Small GTP-binding protein, complete
Length = 1011
Score = 407 bits (1046), Expect = e-114
Identities = 204/216 (94%), Positives = 208/216 (95%)
Frame = +2
Query: 1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
MAA PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 110 MAAAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 289
Query: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNWIRNIEQHASDN
Sbjct: 290 SKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDN 469
Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVEEVFFSIARDIKQR
Sbjct: 470 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQR 649
Query: 181 LADTDSKSEPQTIKINQPDQGAGAAQAAQKSACCGS 216
LADTDS++EPQTIKINQPDQ Q AQKSACCGS
Sbjct: 650 LADTDSRAEPQTIKINQPDQATSGGQPAQKSACCGS 757
>TC215026 homologue to UP|Q40219 (Q40219) RAB8E, partial (92%)
Length = 1071
Score = 395 bits (1014), Expect = e-110
Identities = 200/215 (93%), Positives = 203/215 (94%)
Frame = +2
Query: 1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIE D
Sbjct: 149 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQD 328
Query: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN
Sbjct: 329 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 508
Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
VNK+LVGNKADMDESKR VPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR
Sbjct: 509 VNKVLVGNKADMDESKRVVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 688
Query: 181 LADTDSKSEPQTIKINQPDQGAGAAQAAQKSACCG 215
LADTDSK+EP IKIN A A + AQKSACCG
Sbjct: 689 LADTDSKAEPAGIKINNQLDHATAGEVAQKSACCG 793
>TC215024 homologue to GB|BAB08351.1|9757904|AB015475 Rab-type small
GTP-binding protein-like {Arabidopsis thaliana;} ,
partial (87%)
Length = 895
Score = 355 bits (912), Expect(2) = e-100
Identities = 180/189 (95%), Positives = 182/189 (96%)
Frame = +2
Query: 27 GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86
GKSCL RFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR
Sbjct: 44 GKSCLXXRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 223
Query: 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQA 146
GAMGILLVYDVTDE+SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQA
Sbjct: 224 GAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQA 403
Query: 147 LADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKSEPQTIKINQPDQGAGAAQ 206
LADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSK+EP TIKINQ DQ GA Q
Sbjct: 404 LADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPSTIKINQ-DQSGGAGQ 580
Query: 207 AAQKSACCG 215
AAQKSACCG
Sbjct: 581 AAQKSACCG 607
Score = 25.4 bits (54), Expect(2) = e-100
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 13 DYLIKLLLIGDSGVGK 28
DYL LIGD GVGK
Sbjct: 3 DYLXXXXLIGDXGVGK 50
>TC215025 homologue to GB|BAB08351.1|9757904|AB015475 Rab-type small
GTP-binding protein-like {Arabidopsis thaliana;} ,
partial (71%)
Length = 903
Score = 279 bits (713), Expect = 8e-76
Identities = 156/203 (76%), Positives = 163/203 (79%)
Frame = +1
Query: 1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 304 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 483
Query: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD TDE+SFNNIRNWIRNIEQHASDN
Sbjct: 484 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDGTDEASFNNIRNWIRNIEQHASDN 663
Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
VNKIL G K ++K AVPTSK + IKFFET A+ EVFFS AR + QR
Sbjct: 664 VNKILGGTKLIWMKAK-AVPTSKASPGWMGW-IKFFETRARQI*TWREVFFSKARKLNQR 837
Query: 181 LADTDSKSEPQTIKINQPDQGAG 203
L T I+ NQP G G
Sbjct: 838 LG*TWPPGGTFNIQ-NQPGPGGG 903
>TC227973 UP|Q39845 (Q39845) Small GTP-binding protein, complete
Length = 932
Score = 249 bits (637), Expect = 5e-67
Identities = 128/208 (61%), Positives = 156/208 (74%), Gaps = 2/208 (0%)
Frame = +1
Query: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
+YDYL KLLLIGDSGVGKSCLLLRFSD S+ S+I+TIG+DFKIRT+E DGK IKLQIWD
Sbjct: 151 EYDYLFKLLLIGDSGVGKSCLLLRFSDDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 330
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W+ I+++ASDNVNK+LVGNK
Sbjct: 331 TAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKC 510
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD-SKSE 189
D+ E+ RAV +A ADE GI F ETSAK NVE+ F ++A IK R+A + +
Sbjct: 511 DL-EANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKDRMASQPANNAR 687
Query: 190 PQTIKI-NQPDQGAGAAQAAQKSACCGS 216
P T++I QP AQK CC S
Sbjct: 688 PPTVQIRGQP--------VAQKGGCCSS 747
>TC203411 UP|Q41023 (Q41023) Small GTP-binding protein, partial (59%)
Length = 538
Score = 248 bits (634), Expect = 1e-66
Identities = 124/126 (98%), Positives = 125/126 (98%)
Frame = +3
Query: 1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
MAA PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 159 MAAAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 338
Query: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNWIRNIEQHASDN
Sbjct: 339 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDN 518
Query: 121 VNKILV 126
VNKILV
Sbjct: 519 VNKILV 536
>TC206346 homologue to UP|Q08154 (Q08154) GTP-binding protein, complete
Length = 1106
Score = 241 bits (615), Expect = 2e-64
Identities = 122/208 (58%), Positives = 153/208 (72%), Gaps = 2/208 (0%)
Frame = +1
Query: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
+YDYL KLLLIGDSGVGKSCLLLRF+D S+ S+I+TIG+DFKIRT+E DGK IKLQIWD
Sbjct: 142 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 321
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W+ I+++ASDNVNK+LVGNK+
Sbjct: 322 TAGQERFRTITSSYYRGAHGIIIVYDVTDEDSFNNVKQWLSEIDRYASDNVNKLLVGNKS 501
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDS--KS 188
D+ + R V + AD+ GI F ETSAK NVE+ F +++ IK R+A S +
Sbjct: 502 DL-TANRVVSYDTAKEFADQIGIPFMETSAKDATNVEDAFMAMSAAIKNRMASQPSANNA 678
Query: 189 EPQTIKINQPDQGAGAAQAAQKSACCGS 216
P T++I G QKS CC S
Sbjct: 679 RPPTVQIRGQPVG-------QKSGCCSS 741
>TC225644 UP|Q40203 (Q40203) RAB1C, complete
Length = 1161
Score = 240 bits (613), Expect = 3e-64
Identities = 122/215 (56%), Positives = 156/215 (71%), Gaps = 2/215 (0%)
Frame = +1
Query: 4 PPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
P +YDYL KLLLIGDSGVGKSCLLLRF+D S+ S+I+TIG+DFKIRT+E DGK
Sbjct: 163 PRTTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKT 342
Query: 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 123
IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+ I+++AS+NVNK
Sbjct: 343 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK 522
Query: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183
+LVGNK D+ +K V +A ADE GI F ETSAK NVE+ F ++A +IK R+A
Sbjct: 523 LLVGNKCDLTANK-VVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMAS 699
Query: 184 TD-SKSEPQTIKI-NQPDQGAGAAQAAQKSACCGS 216
+ + P T++I QP QK+ CC +
Sbjct: 700 QPVNNARPPTVQIRGQP--------VNQKAGCCST 780
>TC221792 UP|Q39861 (Q39861) GTP binding protein, complete
Length = 1005
Score = 233 bits (594), Expect = 5e-62
Identities = 126/223 (56%), Positives = 155/223 (69%), Gaps = 17/223 (7%)
Frame = +1
Query: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
+YDYL KLLLIGDSGVGKSCLLLRFSD S+ S+I+TIG+DFKIRT+E DGK IKLQIWD
Sbjct: 136 EYDYLFKLLLIGDSGVGKSCLLLRFSDDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 315
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKILVGNK 129
TAGQERFRTIT++YYRGA GI++VYDVTD E SFNN++ W+ I+++ASDNVNK+LVGNK
Sbjct: 316 TAGQERFRTITSSYYRGAHGIIIVYDVTDGEESFNNVKQWLSEIDRYASDNVNKLLVGNK 495
Query: 130 ADMD-------------ESKRAVPT-SKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175
D++ E+ RAV +A AD GI F ETSAK NVE+ F ++
Sbjct: 496 CDLEANRAVSNIETADLEANRAVSNIETAKAFADGIGIPFMETSAKDATNVEQAFMAMTA 675
Query: 176 DIKQRLADTD-SKSEPQTIKI-NQPDQGAGAAQAAQKSACCGS 216
IK R+A + + P T++I QP AQK CC S
Sbjct: 676 SIKDRMASQPANNARPPTVQIRGQP--------VAQKGGCCSS 780
>TC216317 UP|Q43462 (Q43462) Rab7p protein, complete
Length = 1090
Score = 231 bits (590), Expect = 1e-61
Identities = 116/207 (56%), Positives = 153/207 (73%), Gaps = 2/207 (0%)
Frame = +3
Query: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
+YDYL KLLLIGDS VGKSCLLLRF+D S+ S+I+TIG+DFKIRT+EL+GK +KLQIWD
Sbjct: 45 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWD 224
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVT+ SFNN++ W+ I+++A+D V K+LVGNK+
Sbjct: 225 TAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDTVCKLLVGNKS 404
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSKS 188
D+ ++K V + +A ADE GI F ETSAK ++NVE+ F ++A +IK+++ T KS
Sbjct: 405 DLVDNK-VVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGSQTTTGKS 581
Query: 189 EPQTIKINQPDQGAGAAQAAQKSACCG 215
QP QKS CCG
Sbjct: 582 AESVQMKGQP--------IPQKSNCCG 638
>TC216318 homologue to UP|Q43462 (Q43462) Rab7p protein, complete
Length = 860
Score = 230 bits (587), Expect = 3e-61
Identities = 114/207 (55%), Positives = 158/207 (76%), Gaps = 2/207 (0%)
Frame = +3
Query: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
+YDYL KLLLIGDS VGKSCLLLRF+D S+ S+I+TIG+DFKIRT+EL+GK +KLQIWD
Sbjct: 90 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWD 269
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVT+ SFNN++ W+ I+++A+D+V K+LVGNK+
Sbjct: 270 TAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKS 449
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL-ADTDSKSE 189
D+ ++K V + +A ADE GI F ETSAK ++NVE+ F ++ +IK+++ + T +
Sbjct: 450 DLVDNK-VVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMTAEIKKKMGSQTTAGKS 626
Query: 190 PQTIKI-NQPDQGAGAAQAAQKSACCG 215
+T+++ QP QKS CCG
Sbjct: 627 AETVQMKGQP--------IPQKSNCCG 683
>TC215029 similar to UP|ARA3_ARATH (P28186) Ras-related protein ARA-3,
partial (51%)
Length = 573
Score = 187 bits (475), Expect = 3e-48
Identities = 97/111 (87%), Positives = 102/111 (91%)
Frame = +1
Query: 1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
MAAPPARARADYDYLIKLL IGDSG GKS LLLR+SDGSFTTS+ITTIGIDFKIRTIELD
Sbjct: 241 MAAPPARARADYDYLIKLLSIGDSGDGKS*LLLRYSDGSFTTSYITTIGIDFKIRTIELD 420
Query: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIR 111
GKRIKLQI DTA QERF+TITTAYYRGAM ILL YDVTDE+S+NNI N IR
Sbjct: 421 GKRIKLQI*DTASQERFQTITTAYYRGAMSILLDYDVTDEASYNNIMNCIR 573
>TC214200 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C,
complete
Length = 1240
Score = 186 bits (471), Expect = 9e-48
Identities = 93/214 (43%), Positives = 133/214 (61%), Gaps = 4/214 (1%)
Frame = +3
Query: 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
R +YDYL K++LIGDSGVGKS +L RF+ F +TIG++F RT++++GK +K
Sbjct: 270 RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKA 449
Query: 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV 126
QIWDTAGQER+R IT+AYYRGA+G LLVYD+T +F+N++ W+R + HA N+ ++
Sbjct: 450 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMA 629
Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDS 186
GNK+D+ RAV GQALA+ G+ F ETSA N+E+ F +I +I ++
Sbjct: 630 GNKSDLSH-LRAVSEDDGQALAEREGLSFLETSALEATNIEKAFQTILTEIYHIVSKKAL 806
Query: 187 KSEPQTIKINQPDQG----AGAAQAAQKSACCGS 216
++ + P QG G A K CC +
Sbjct: 807 AAQEAAVGTTLPGQGTTINVGDASGNTKRGCCST 908
>TC214158 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C,
complete
Length = 1243
Score = 186 bits (471), Expect = 9e-48
Identities = 95/219 (43%), Positives = 135/219 (61%), Gaps = 4/219 (1%)
Frame = +3
Query: 2 AAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
AA R +YDYL K++LIGDSGVGKS +L RF+ F +TIG++F RT++++G
Sbjct: 234 AAMAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG 413
Query: 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV 121
K +K QIWDTAGQER+R IT+AYYRGA+G LLVYD+T +F+N++ W+R + HA N+
Sbjct: 414 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNI 593
Query: 122 NKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
++ GNK+D+ RAV GQALA+ G+ F ETSA N+E+ F +I +I +
Sbjct: 594 VIMMAGNKSDLSH-LRAVSEDDGQALAEREGLSFLETSALEATNIEKAFQTILTEIYHIV 770
Query: 182 ADTDSKSEPQTIKINQPDQG----AGAAQAAQKSACCGS 216
+ ++ + P QG G A K CC +
Sbjct: 771 SKKALAAQEAAVGTILPGQGTTINVGDASGNTKRGCCSA 887
>TC205442 UP|Q40208 (Q40208) RAB2A, complete
Length = 1159
Score = 185 bits (469), Expect = 2e-47
Identities = 98/212 (46%), Positives = 131/212 (61%), Gaps = 6/212 (2%)
Frame = +2
Query: 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQI 68
R Y YL K ++IGD+GVGKSCLLL+F+D F TIG++F R I +D K IKLQI
Sbjct: 95 RMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQI 274
Query: 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGN 128
WDTAGQE FR+IT +YYRGA G LLVYD+T +FN++ +W+ + QHA+ N+ +L+GN
Sbjct: 275 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN 454
Query: 129 KADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDS 186
K D+ +RAV T +G+ A E+G+ F E SAKT NVEE F A I +++ D D
Sbjct: 455 KCDL-AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDV 631
Query: 187 KSEPQTIKIN----QPDQGAGAAQAAQKSACC 214
+E IK+ G +A CC
Sbjct: 632 SNESYGIKVGYGGIPGPSGGRDGPSASAGGCC 727
>TC218982 homologue to UP|Q38922 (Q38922) ATGB2 (GTP-binding protein GB2),
complete
Length = 939
Score = 184 bits (467), Expect = 3e-47
Identities = 96/214 (44%), Positives = 132/214 (60%), Gaps = 6/214 (2%)
Frame = +3
Query: 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
R+ YDYL K ++IGD+GVGKSCLLL+F+D F TIG++F R + +D + IKL
Sbjct: 120 RSAMSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDSRPIKL 299
Query: 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV 126
QIWDTAGQE FR+IT +YYRGA G LLVYD+T +FN++ +W+ + QHA+ N+ +L+
Sbjct: 300 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLASWLEDARQHANPNMTIMLI 479
Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--T 184
GNK D+ +RAV +G+ A E G+ F E SA+T NVEE F A I Q + +
Sbjct: 480 GNKCDLSH-RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIRTAGKILQNIKEGVF 656
Query: 185 DSKSEPQTIKIN----QPDQGAGAAQAAQKSACC 214
D +E IK+ Q GA + + CC
Sbjct: 657 DVSNESFGIKVGYGRPQGQSGARDGTVSARGGCC 758
>TC206349 UP|P92963 (P92963) Rab2-like protein (GTP-binding RAB2A like
protein) (At4g17170), partial (90%)
Length = 728
Score = 183 bits (465), Expect = 5e-47
Identities = 94/189 (49%), Positives = 126/189 (65%), Gaps = 2/189 (1%)
Frame = +1
Query: 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQI 68
R Y YL K ++IGD+GVGKSCLLL+F+D F TIG++F R I +D K IKLQI
Sbjct: 157 RMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQI 336
Query: 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGN 128
WDTAGQE FR+IT +YYRGA G LLVYD+T +FN++ +W+ + QHA+ N+ +L+GN
Sbjct: 337 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN 516
Query: 129 KADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDS 186
K D+ +RAV T +G+ A E+G+ F E SAKT NVEE F A I +++ D D
Sbjct: 517 KCDL-AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDV 693
Query: 187 KSEPQTIKI 195
+E IK+
Sbjct: 694 SNESYGIKV 720
>TC216386 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
partial (85%)
Length = 967
Score = 180 bits (456), Expect = 5e-46
Identities = 97/219 (44%), Positives = 135/219 (61%), Gaps = 9/219 (4%)
Frame = +2
Query: 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
RA +YDYL K++LIGDSGVGKS LL RF+ F +TIG++F RT++++G+ +K
Sbjct: 188 RAEEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKA 367
Query: 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV 126
QIWDTAGQER+R IT+AYYRGA+G LLVYDVT ++F N+ W++ + HA N+ +L+
Sbjct: 368 QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADANIVIMLI 547
Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRL 181
GNK D+ + RAV T Q A++ G+ F ETSA NVE F +I +I K+ L
Sbjct: 548 GNKTDL-KHLRAVATEDAQGYAEKEGLSFIETSALEATNVENAFQTILAEIYRIISKKSL 724
Query: 182 ADTDSKS----EPQTIKINQPDQGAGAAQAAQKSACCGS 216
+ D + E +TI + G K +CC S
Sbjct: 725 SSNDPAANIIKEGKTITV-----GGAPEPNTNKPSCCTS 826
>TC217862 homologue to UP|Q08149 (Q08149) GTP-binding protein, complete
Length = 1149
Score = 177 bits (450), Expect = 2e-45
Identities = 97/218 (44%), Positives = 131/218 (59%), Gaps = 8/218 (3%)
Frame = +2
Query: 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
RA DYDYL K++LIGDSGVGKS LL RF+ F+ +TIG++F R+I +D K +K
Sbjct: 215 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKA 394
Query: 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV 126
QIWDTAGQER+R IT+AYYRGA+G LLVYDVT +F N+ W++ + H N+ +LV
Sbjct: 395 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLV 574
Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA---- 182
GNKAD+ RAV T +A A+ F ETSA +LNV+ F + I + ++
Sbjct: 575 GNKADL-RHLRAVSTDDAKAFAERENTFFMETSALESLNVDNAFTEVLTQIYRVVSRKTL 751
Query: 183 ----DTDSKSEPQTIKINQPDQGAGAAQAAQKSACCGS 216
D + + QTI + D A +KS CC +
Sbjct: 752 EIGDDPAALPKGQTINVGSRDD----VSAVKKSGCCSA 853
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,040,340
Number of Sequences: 63676
Number of extensions: 83154
Number of successful extensions: 588
Number of sequences better than 10.0: 181
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of query: 216
length of database: 12,639,632
effective HSP length: 93
effective length of query: 123
effective length of database: 6,717,764
effective search space: 826284972
effective search space used: 826284972
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC125368.9