BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125368.2 - phase: 0
(430 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC219112 weakly similar to UP|Q94AA1 (Q94AA1) AT3g09470/F11F8_4,... 355 2e-98
BI787704 similar to GP|15146218|gb| AT3g09470/F11F8_4 {Arabidops... 134 8e-32
TC219111 43 2e-04
TC213814 similar to UP|Q84TF1 (Q84TF1) At4g28830, partial (19%) 31 1.2
TC203881 similar to UP|FERA_ALOMA (P81372) Ferredoxin A (Fd A), ... 30 1.6
TC231658 30 1.6
TC233036 29 4.7
TC218602 similar to GB|AAB66486.1|2318131|AF014824 histone deace... 29 4.7
TC211934 similar to UP|Q6WS85 (Q6WS85) Single myb histone 1, par... 29 4.7
TC204519 similar to UP|Q39800 (Q39800) Delta-tonoplast intrinsic... 28 6.1
TC225136 similar to UP|Q8JUF0 (Q8JUF0) Small polyprotein 2, part... 28 8.0
AW620568 28 8.0
TC223090 similar to UP|Q93YH5 (Q93YH5) Monodehydroascorbate redu... 28 8.0
TC205235 weakly similar to UP|Q9SC83 (Q9SC83) VAP27, partial (28%) 28 8.0
BE660008 28 8.0
>TC219112 weakly similar to UP|Q94AA1 (Q94AA1) AT3g09470/F11F8_4, partial
(43%)
Length = 1150
Score = 355 bits (912), Expect = 2e-98
Identities = 199/292 (68%), Positives = 218/292 (74%), Gaps = 1/292 (0%)
Frame = +1
Query: 140 KVL*LVTSTGNSGLFMHSISLLEILLHLLY-SVMGRGEVPTAPLYCLLYSFSL*PLVQY* 198
KV *LVT GNSGL MHS SLLEILLHLLY ++ R EVP A LYCLLYSFSL*PLVQY*
Sbjct: 16 KVQ*LVTLMGNSGLCMHSTSLLEILLHLLY*VIINRREVPRAQLYCLLYSFSL*PLVQY* 195
Query: 199 CSSCINELVIVKKNTRIQKPMLLNQSPLSLYVNHSQVHCLMRRCC*SYPLWHIQVYNKHL 258
C+SC N ++I + N Q ML + P SLY NH VHCLM RCC*SYPL HIQVYNKHL
Sbjct: 196 CASCANGVLIARDNKSFQVQMLAHVHP*SLYPNHLPVHCLM*RCC*SYPLLHIQVYNKHL 375
Query: 259 YGLNLPSLL*LQQLVFLVLVLQWQHMGLLMEYVLWLLVVSPLVSRPLHR*FLLELLLRRL 318
GLN S+L*L QLVFLV V+QWQH LLMEYVL LLVVSPLVS L +*FL + LR+
Sbjct: 376 CGLNSQSML*LLQLVFLVWVVQWQHTRLLMEYVLCLLVVSPLVSHLLQQ*FLQDFSLRQS 555
Query: 319 H*SYFC*ISAYLADFSVLHIYSFWLLYWASVMEF**HSSMLC*EYYLSMTWKGLLHS*RY 378
+*SYFC*ISA +AD VL YS WL+YWASVMEF**H+ M EYYLSMT KGLL S*+Y
Sbjct: 556 Y*SYFC*ISA*VADCLVLFTYSSWLVYWASVMEF**HNLMH*LEYYLSMTRKGLLLS*KY 735
Query: 379 GKALQLLSCSFWPRTFRSKQLP*SCWFYYACHSVVFYGWLSRWGMHHHPPPV 430
G ALQLLSCSF PR+ RSK * C +A HS Y L RWG HHHPPPV
Sbjct: 736 GNALQLLSCSFSPRSSRSKPCL*LCLLSFASHSAFSYCLL*RWGRHHHPPPV 891
>BI787704 similar to GP|15146218|gb| AT3g09470/F11F8_4 {Arabidopsis
thaliana}, partial (14%)
Length = 421
Score = 134 bits (337), Expect = 8e-32
Identities = 72/93 (77%), Positives = 83/93 (88%), Gaps = 1/93 (1%)
Frame = +3
Query: 9 DEETPLVVESPIQLQPHKSH-SRDVHILSIAFVLIFLAYGAAQNLQSTLNTEEDLGTTSL 67
DEETPLV + L+ KSH +RDVHILS+AF+L+FLA+GAAQNLQSTLNTE+DLGTTSL
Sbjct: 144 DEETPLVGDIS-GLEGRKSHHTRDVHILSLAFLLVFLAFGAAQNLQSTLNTEDDLGTTSL 320
Query: 68 GILYLSFTFFSVFASLVVRILGSKNALIIGTSG 100
GILYLSFTF SV ASLVVR+LGSKNAL+IGT+G
Sbjct: 321 GILYLSFTFLSVVASLVVRVLGSKNALLIGTTG 419
>TC219111
Length = 409
Score = 43.1 bits (100), Expect = 2e-04
Identities = 22/42 (52%), Positives = 24/42 (56%)
Frame = +3
Query: 389 FWPRTFRSKQLP*SCWFYYACHSVVFYGWLSRWGMHHHPPPV 430
F PR+ RSK * C +A HS Y L R G HHHPPPV
Sbjct: 3 FSPRSSRSKPCL*LCLLSFASHSAFSYCLL*RSGRHHHPPPV 128
>TC213814 similar to UP|Q84TF1 (Q84TF1) At4g28830, partial (19%)
Length = 419
Score = 30.8 bits (68), Expect = 1.2
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 215 IQKPMLLNQSPLSLYVNHSQVHCLMRRCC*SYPLWHI-QVYNKHLYGLNLPSLL*LQQLV 273
I ML PLSLY+ H + + C*S+ L+ + V+++ L + V
Sbjct: 118 IASRMLFTVFPLSLYLPCFLFHSFIHQIC*SWILFALSHVHHRVL----------INGFV 267
Query: 274 FLVLVLQWQHMGLLMEYVLWLLVVSPLV 301
FL+ W+ L+ Y W L+VS +V
Sbjct: 268 FLIYTCLWKLTNLV--YAKWYLLVSFVV 345
>TC203881 similar to UP|FERA_ALOMA (P81372) Ferredoxin A (Fd A), partial
(79%)
Length = 1057
Score = 30.4 bits (67), Expect = 1.6
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +1
Query: 153 LFMHSISLLEILLHLLY--SVMGRGEVPTAPLYC 184
LFMH +S I+L L+ S+MGRG + +P++C
Sbjct: 619 LFMHMLSKTIIVLLYLFLSSLMGRG*IRVSPIFC 720
>TC231658
Length = 582
Score = 30.4 bits (67), Expect = 1.6
Identities = 22/87 (25%), Positives = 43/87 (49%)
Frame = +1
Query: 27 SHSRDVHILSIAFVLIFLAYGAAQNLQSTLNTEEDLGTTSLGILYLSFTFFSVFASLVVR 86
+HSR V +L + F++ + G ++ T++ L +G L +SV +L+
Sbjct: 235 NHSRKVTVLPLVFLIFYEVSGGPFGVEDTVHAAGPL-LALIGFLLFPL-IWSVPEALITA 408
Query: 87 ILGSKNALIIGTSGYWLYVAANLKPNW 113
+G+ + SGY ++V++ L P W
Sbjct: 409 EMGT---MFPENSGYVVWVSSALGPFW 480
>TC233036
Length = 832
Score = 28.9 bits (63), Expect = 4.7
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Frame = -1
Query: 242 CC*SYPLWHIQ------VYNKHLYGLNLPSLL*LQQLVFLVLVLQWQ-HMGLLMEYVL-- 292
CC LWH+Q + +L L LPS + L L WQ HM EY++
Sbjct: 814 CCFQTGLWHMQSATASNCFVGNLVALLLPSTFAVSLRAQLHLTAYWQLHMMAEFEYIVTH 635
Query: 293 -------WLLVVSPLV--SRPLH 306
W+ + PL SRP++
Sbjct: 634 GSHCSRTWISGLMPLACCSRPMY 566
>TC218602 similar to GB|AAB66486.1|2318131|AF014824 histone deacetylase
{Arabidopsis thaliana;} , partial (21%)
Length = 771
Score = 28.9 bits (63), Expect = 4.7
Identities = 14/23 (60%), Positives = 16/23 (68%)
Frame = -1
Query: 217 KPMLLNQSPLSLYVNHSQVHCLM 239
KPMLLN S SL+ NHSQ L+
Sbjct: 519 KPMLLNTSGPSLWPNHSQYFVLL 451
>TC211934 similar to UP|Q6WS85 (Q6WS85) Single myb histone 1, partial (35%)
Length = 750
Score = 28.9 bits (63), Expect = 4.7
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -2
Query: 42 IFLAYGAAQNLQSTLNTEEDLGTTSL----GILYLSFTFFSVFASLVVRILGSKNALIIG 97
+F A+G + L S N EE L + + ILYL FTF + + + N L +G
Sbjct: 518 VFSAFGESLGLPSRSNREEHLLFSDIVKFVAILYLCFTFINFPLATMCFSFVDSNFLRVG 339
Query: 98 TSGY 101
Y
Sbjct: 338 VEQY 327
>TC204519 similar to UP|Q39800 (Q39800) Delta-tonoplast intrinsic protein,
partial (97%)
Length = 989
Score = 28.5 bits (62), Expect = 6.1
Identities = 11/28 (39%), Positives = 14/28 (49%), Gaps = 3/28 (10%)
Frame = +3
Query: 403 CW---FYYACHSVVFYGWLSRWGMHHHP 427
CW F++ C W+ WG HHHP
Sbjct: 276 CWSQHFWWPCEPCCDL-WVGSWGPHHHP 356
>TC225136 similar to UP|Q8JUF0 (Q8JUF0) Small polyprotein 2, partial (23%)
Length = 746
Score = 28.1 bits (61), Expect = 8.0
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Frame = +1
Query: 229 YVNHSQVHCLMRRCC*SYPLWHIQVYNKHLYGLNLPSLL*LQQLVFLVLVLQWQ------ 282
++ Q+ C++++ C W + V+ L+ + + L Q V L LVL WQ
Sbjct: 172 FLQLGQLRCVLQQLC-----WLMGVHICMLWCMIVQCL---QYQVILSLVLSWQP*TICV 327
Query: 283 HMGLLMEY---VLWLLVVSPLVSR 303
HMG ++ + V W +SP S+
Sbjct: 328 HMGSILVFQVLVFWAPFLSPFHSK 399
>AW620568
Length = 423
Score = 28.1 bits (61), Expect = 8.0
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = -3
Query: 111 PNWYTLVPASVYLGFCASIIWVGQITISTKVL*LVTSTGNSGLFMHSISLLEILLHLLYS 170
PN + V + +Y IW+ IST L*+ + LLE L
Sbjct: 373 PNLHNTVISVLYT------IWLRLRPISTSFL*ICKIAS-------AFLLLEYALSRNL* 233
Query: 171 VMGRGEVPTAPLYC-LLYSFSL*PLVQ 196
+MG G PTA + C L +FS+ P++Q
Sbjct: 232 IMGVGTYPTANISCKTLITFSIAPVLQ 152
>TC223090 similar to UP|Q93YH5 (Q93YH5) Monodehydroascorbate reductase
(Fragment) , partial (39%)
Length = 774
Score = 28.1 bits (61), Expect = 8.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 97 GTSGYWLYVAANLKPNWYTLVPASV 121
GT+G+WL V A LKP + V +S+
Sbjct: 450 GTTGFWLTVTAKLKPCLSSSVKSSI 376
>TC205235 weakly similar to UP|Q9SC83 (Q9SC83) VAP27, partial (28%)
Length = 602
Score = 28.1 bits (61), Expect = 8.0
Identities = 7/19 (36%), Positives = 13/19 (67%)
Frame = +2
Query: 403 CWFYYACHSVVFYGWLSRW 421
CWF++ +F+GW++ W
Sbjct: 347 CWFFFLFLLFLFFGWITFW 403
>BE660008
Length = 641
Score = 28.1 bits (61), Expect = 8.0
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 130 IWVGQITISTKVL*LVTSTGNSGLFMHSISLLEILLHLLYSVMGR 174
+ + ++ I L +T S + H+I +L L HLL+S++GR
Sbjct: 541 VTIKKVPIIATTLFYITLLLRSLILCHTIDILTSLRHLLHSLLGR 407
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.344 0.150 0.524
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,707,149
Number of Sequences: 63676
Number of extensions: 447242
Number of successful extensions: 5008
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5006
length of query: 430
length of database: 12,639,632
effective HSP length: 100
effective length of query: 330
effective length of database: 6,272,032
effective search space: 2069770560
effective search space used: 2069770560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC125368.2