BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124972.1 + phase: 0
(198 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231523 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {A... 117 3e-27
AW184817 117 5e-27
TC230206 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {A... 106 6e-24
TC232798 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {A... 94 5e-20
TC227181 similar to UP|Q940N7 (Q940N7) AT4g05150/C17L7_70, parti... 91 5e-19
TC219391 similar to GB|AAO39954.1|28372944|BT003726 At5g63130 {A... 80 5e-16
TC219390 similar to GB|AAT41790.1|48310282|BT014807 At3g48240 {A... 78 2e-15
TC228907 similar to GB|AAO39954.1|28372944|BT003726 At5g63130 {A... 68 2e-12
TC228906 similar to UP|Q6ID88 (Q6ID88) At3g26510, partial (48%) 67 4e-12
BE660681 67 7e-12
BE806716 63 1e-10
BM890868 60 9e-10
CO978672 54 4e-08
AI736666 similar to GP|20197587|gb| expressed protein {Arabidops... 42 2e-04
BG238668 41 3e-04
TC228908 similar to UP|Q6ID88 (Q6ID88) At3g26510, partial (21%) 35 0.017
TC215493 weakly similar to UP|DX_DROME (Q23985) Deltex protein, ... 34 0.039
TC231507 UP|Q8S3J3 (Q8S3J3) Hydroxyisourate hydrolase, partial (... 32 0.19
TC232550 similar to GB|AAC72109.1|3850569|F15K9 ESTs gb|T21276, ... 28 2.1
AW349305 28 2.8
>TC231523 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
thaliana;} , partial (32%)
Length = 878
Score = 117 bits (293), Expect = 3e-27
Identities = 70/150 (46%), Positives = 95/150 (62%), Gaps = 6/150 (4%)
Frame = +1
Query: 3 RVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFS---D 59
+ K M +YG KIQPR HD++ SY+GGD KI+ VDR++ F ++KL+ S D
Sbjct: 130 KAKFMCSYGGKIQPRT---HDNQ-LSYVGGDTKILAVDRSVKFPAFLSKLAAVCDSAPQD 297
Query: 60 VCFKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFPVPINNNKASF 119
+ FKYQL GEDLDALI V N++DL HMM EYDR+ R + KP +R+FLF + +N +SF
Sbjct: 298 LTFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLYRPNLKPVRMRLFLFTLSNSNPNSSF 477
Query: 120 DSLAS--VDSLNSVQV-FPFEEYSSPPTTP 146
S V++LNS V + +PP TP
Sbjct: 478 SSERDRFVEALNSGPVPSQPDPIKTPPVTP 567
>AW184817
Length = 455
Score = 117 bits (292), Expect = 5e-27
Identities = 73/155 (47%), Positives = 96/155 (61%), Gaps = 8/155 (5%)
Frame = +3
Query: 5 KLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFSDVC--- 61
KLM ++G IQPR HD+ +Y+ GD KI+ VDR++ F L+AKLS+ +
Sbjct: 3 KLMCSFGGSIQPRP---HDNH-LTYVSGDTKILAVDRHVKFPSLIAKLSSLANNTPSNLS 170
Query: 62 -FKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFPVPINNNKASFD 120
FKYQL GEDLDALI V N++DL+ MM EYDR+ R S +PA LR+FLFP+ N N A +
Sbjct: 171 FFKYQLPGEDLDALISVTNDDDLHQMMIEYDRLSRASPRPARLRLFLFPLHNNCNFAPTE 350
Query: 121 SLAS----VDSLNSVQVFPFEEYSSPPTTPPHPFM 151
S + VD+LNSV V P + PP T F+
Sbjct: 351 SKSERQWFVDALNSVHV-PEDSPPPPPATANPDFL 452
>TC230206 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
thaliana;} , partial (28%)
Length = 1305
Score = 106 bits (265), Expect = 6e-24
Identities = 57/111 (51%), Positives = 78/111 (69%), Gaps = 4/111 (3%)
Frame = +3
Query: 3 RVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFS---- 58
+ K M +YG KI PR HD++ SY+ G+ KI+ VDR+I FS ++AKLS +
Sbjct: 171 KAKFMCSYGGKILPRS---HDNQ-LSYVAGETKILAVDRSIKFSAMLAKLSALCDAPDNN 338
Query: 59 DVCFKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFP 109
++ FKYQL GEDLDALI V N++DL+HMM EYDR+ R S +P+ +R+FLFP
Sbjct: 339 NLTFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPSRMRLFLFP 491
>TC232798 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
thaliana;} , partial (10%)
Length = 707
Score = 93.6 bits (231), Expect = 5e-20
Identities = 54/121 (44%), Positives = 74/121 (60%), Gaps = 5/121 (4%)
Frame = +1
Query: 32 GDNKIITVDRNINFSDLMAKLSTF---MFSDVCFKYQLLGEDLDALIPVYNEEDLNHMMF 88
GD KI+ VDR+I F ++AKLS +++ FKYQL GEDLDALI V N++DL+HMM
Sbjct: 1 GDTKILAVDRSIKFPAMLAKLSALCDAQDNNITFKYQLPGEDLDALISVTNDDDLDHMMH 180
Query: 89 EYDRMCRFSQKPAWLRVFLFP--VPINNNKASFDSLASVDSLNSVQVFPFEEYSSPPTTP 146
EYDR+ R S +P+ +R+FLFP P + AS + N +F E+ + P P
Sbjct: 181 EYDRLYRASARPSRMRLFLFPSDTPPSPPPASAPPDTVIKPNNVDFLFALEKNVAVPAPP 360
Query: 147 P 147
P
Sbjct: 361 P 363
>TC227181 similar to UP|Q940N7 (Q940N7) AT4g05150/C17L7_70, partial (38%)
Length = 1611
Score = 90.5 bits (223), Expect = 5e-19
Identities = 56/123 (45%), Positives = 79/123 (63%), Gaps = 3/123 (2%)
Frame = +3
Query: 3 RVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFM-FSDVC 61
R++ M ++G KI PR HD++ Y+GGD +I+ V+R+I FS L+ KLS S++
Sbjct: 159 RIRFMCSFGGKILPRP---HDNQ-LRYVGGDTRIVAVNRSITFSALILKLSKLSGMSNIT 326
Query: 62 FKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKP--AWLRVFLFPVPINNNKASF 119
KYQL EDLDALI V +ED+ +MM EYDR+ +Q P A LR+FLFP ++ +S
Sbjct: 327 AKYQLPNEDLDALISVTTDEDVENMMDEYDRVAH-NQNPRSARLRLFLFPEGEDSRASSI 503
Query: 120 DSL 122
SL
Sbjct: 504 SSL 512
>TC219391 similar to GB|AAO39954.1|28372944|BT003726 At5g63130 {Arabidopsis
thaliana;} , partial (44%)
Length = 718
Score = 80.5 bits (197), Expect = 5e-16
Identities = 52/147 (35%), Positives = 73/147 (49%)
Frame = +1
Query: 2 ERVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFSDVC 61
+ +KL+ +YG KI PR T Y GG +++TV R+I+FS+LM KLS F S V
Sbjct: 142 QTIKLLCSYGGKILPRATD----GELRYAGGHTRVLTVARSISFSELMVKLSEFCGSSVI 309
Query: 62 FKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFPVPINNNKASFDS 121
+ QL DL+ LI + N+EDL ++ EYDR P ++ L P + S S
Sbjct: 310 LRCQLPKGDLETLISITNDEDLASIIEEYDRASLKLAHPLKIKAVLSPPKSSKKTPSAPS 489
Query: 122 LASVDSLNSVQVFPFEEYSSPPTTPPH 148
AS + +S P S P H
Sbjct: 490 SASSSASHSPSRSPHTSTDSLPYAAYH 570
>TC219390 similar to GB|AAT41790.1|48310282|BT014807 At3g48240 {Arabidopsis
thaliana;} , partial (53%)
Length = 845
Score = 78.2 bits (191), Expect = 2e-15
Identities = 46/117 (39%), Positives = 66/117 (56%)
Frame = +1
Query: 2 ERVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFSDVC 61
+ +KL+ +YG KI PR T Y+GG +++TVDR+I+F +LM KL F S V
Sbjct: 148 QTIKLLCSYGGKILPRATD----GELRYVGGHTRVLTVDRSISFPELMVKLRVFCGSSVI 315
Query: 62 FKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFPVPINNNKAS 118
+ QL DL+ LI + N+EDL ++ EYDR P ++ L P P + KAS
Sbjct: 316 LRCQLPKGDLETLISITNDEDLASIIEEYDRSSLKLAHPLKIKAVLSP-PKSMKKAS 483
>TC228907 similar to GB|AAO39954.1|28372944|BT003726 At5g63130 {Arabidopsis
thaliana;} , partial (53%)
Length = 537
Score = 68.2 bits (165), Expect = 2e-12
Identities = 39/107 (36%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Frame = +1
Query: 4 VKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFSDVCF- 62
+K + +YG KI PR + + Y+GG +++ VDR+I FS+L+ KL + V +
Sbjct: 178 LKFLCSYGGKILPR----YPDGKLRYLGGHTRVLAVDRSIPFSELLLKLEELCGASVRYL 345
Query: 63 KYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFP 109
+ QL EDLDAL+ + ++EDL +++ EYDR+ +R FL P
Sbjct: 346 RCQLPSEDLDALVSITSDEDLANLIEEYDRVSSLK-----IRAFLSP 471
>TC228906 similar to UP|Q6ID88 (Q6ID88) At3g26510, partial (48%)
Length = 927
Score = 67.4 bits (163), Expect = 4e-12
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Frame = +2
Query: 4 VKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFSDVC-F 62
+K + +YG KI PR + + Y+GG +I+ VDR+I FS+L+ KL + V
Sbjct: 155 LKFLCSYGGKILPR----YPDGKLRYLGGHTRILAVDRSIPFSELLLKLEELCGASVRHL 322
Query: 63 KYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFP 109
+ QL EDLDAL+ + ++EDL +++ EYDR+ +R FL P
Sbjct: 323 RCQLPSEDLDALVSITSDEDLANLIEEYDRVSSLK-----IRAFLSP 448
>BE660681
Length = 541
Score = 66.6 bits (161), Expect = 7e-12
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Frame = +3
Query: 3 RVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFSDVCF 62
+++LM +YG I PR HD + Y+GGD +II +R + +DL +LS + F
Sbjct: 129 KLRLMCSYGGHIVPRP---HD-KSLCYVGGDTRIIVSERATSLADLSMRLSKTFLNGRPF 296
Query: 63 --KYQLLGEDLDALIPVYNEEDLNHMMFEYDR 92
KYQL EDLD+LI V +EDL +M+ EYDR
Sbjct: 297 TLKYQLPNEDLDSLISVTTDEDLENMIDEYDR 392
>BE806716
Length = 407
Score = 62.8 bits (151), Expect = 1e-10
Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Frame = +1
Query: 3 RVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFSDVCF 62
+++LM +YG I PR HD + SYIGGD +I+ VDR+ + DL ++LS + + F
Sbjct: 169 KLRLMCSYGGHIMPRP---HD-KSLSYIGGDTRIVVVDRHSSLKDLCSRLSRTILNGRPF 336
Query: 63 --KYQLLGEDLDALIPVYNEEDL 83
KYQL EDL++LI V +EDL
Sbjct: 337 TLKYQLPNEDLESLITVTTDEDL 405
>BM890868
Length = 421
Score = 59.7 bits (143), Expect = 9e-10
Identities = 31/60 (51%), Positives = 41/60 (67%)
Frame = +1
Query: 62 FKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFPVPINNNKASFDS 121
F +L GEDLDALI V N++DL HMM EY+R+ R + KP +R+FLF + N +SF S
Sbjct: 16 FLSKLAGEDLDALISVTNDDDLEHMMLEYERLYRPNLKPIRMRLFLFTLSN*NPNSSFYS 195
>CO978672
Length = 725
Score = 54.3 bits (129), Expect = 4e-08
Identities = 31/65 (47%), Positives = 41/65 (62%), Gaps = 2/65 (3%)
Frame = -3
Query: 47 DLMAKLSTFM--FSDVCFKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLR 104
+LM K+S+ + D+ KYQL+ EDLDAL+ V EED+ HM+ E+DR A LR
Sbjct: 621 ELMKKVSSMVEGVGDMVLKYQLIPEDLDALVSVRTEEDVKHMIEEHDR----HHTGALLR 454
Query: 105 VFLFP 109
FLFP
Sbjct: 453 AFLFP 439
>AI736666 similar to GP|20197587|gb| expressed protein {Arabidopsis
thaliana}, partial (6%)
Length = 357
Score = 41.6 bits (96), Expect = 2e-04
Identities = 30/90 (33%), Positives = 45/90 (49%), Gaps = 10/90 (11%)
Frame = +3
Query: 29 YIGGDNKIITVDRNINFSDLMAKLSTFMFSDVC-------FKYQLLGEDLDALIPVYNEE 81
Y+GGD +II +R + DL ST +++ EDL+ LI V +E
Sbjct: 18 YVGGDTRIIGCERATSLWDL----STAPINNIA*MEDP*RSSTSCATEDLECLIYVTTDE 185
Query: 82 DLNHMMFEYDR---MCRFSQKPAWLRVFLF 108
DL +M+ EY+R + KP +R+FLF
Sbjct: 186 DLENMIEEYERTACVATCCDKPCRIRLFLF 275
>BG238668
Length = 442
Score = 41.2 bits (95), Expect = 3e-04
Identities = 20/49 (40%), Positives = 31/49 (62%)
Frame = +2
Query: 4 VKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKL 52
+K + +YG KI PR + + Y+GG +I+ VDR+I FS+L+ KL
Sbjct: 170 LKFLCSYGGKILPR----YPDGKLRYLGGHTRILAVDRSIPFSELLLKL 304
>TC228908 similar to UP|Q6ID88 (Q6ID88) At3g26510, partial (21%)
Length = 775
Score = 35.4 bits (80), Expect = 0.017
Identities = 18/61 (29%), Positives = 32/61 (51%)
Frame = +3
Query: 4 VKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFSDVCFK 63
+K + +YG KI PR + + Y+GG +++ VDR+I FS + T ++ F
Sbjct: 516 LKFLCSYGGKILPR----YPDGKLRYLGGHTRVLAVDRSIPFSGQFSLSHTHSLTN*IFN 683
Query: 64 Y 64
+
Sbjct: 684 F 686
>TC215493 weakly similar to UP|DX_DROME (Q23985) Deltex protein, partial (6%)
Length = 2072
Score = 34.3 bits (77), Expect = 0.039
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Frame = +3
Query: 73 ALIPVYNEEDLNHMMFEYDRMCRFSQ---KPAWLRVFLFP 109
+LI V +EDL +M+ EYDR + KP+ +R+FLFP
Sbjct: 3 SLISVTTDEDLENMIDEYDRTAAAATSAVKPSRIRLFLFP 122
>TC231507 UP|Q8S3J3 (Q8S3J3) Hydroxyisourate hydrolase, partial (87%)
Length = 1461
Score = 32.0 bits (71), Expect = 0.19
Identities = 18/73 (24%), Positives = 34/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 127 SLNSVQVFP---FEEYSSPPTTPPHPFMATKDTVTKAEMKKFCGIHVVNDEFEDILKLYL 183
++N VF +++ +SPP PF AT DT+ + + + +H + +LY
Sbjct: 589 TVNEPNVFALGGYDQGNSPPRRCSPPFCATNDTMGNSTYEPYLAVHHILLSHSSAARLYW 768
Query: 184 KRNFSKVKDFHGL 196
++ K F G+
Sbjct: 769 RKYRDKQHGFVGI 807
>TC232550 similar to GB|AAC72109.1|3850569|F15K9 ESTs gb|T21276, gb|T45403,
and gb|AA586113 come from this gene. {Arabidopsis
thaliana;} , partial (5%)
Length = 951
Score = 28.5 bits (62), Expect = 2.1
Identities = 17/54 (31%), Positives = 24/54 (43%)
Frame = -2
Query: 105 VFLFPVPINNNKASFDSLASVDSLNSVQVFPFEEYSSPPTTPPHPFMATKDTVT 158
VF P ++ S DSL L F F+ S+PP +P +T D+ T
Sbjct: 485 VFSSPTSLSFTTFSSDSLVESFLLTPSSAFDFDASSTPPLSPTDSDFSTCDSST 324
>AW349305
Length = 470
Score = 28.1 bits (61), Expect = 2.8
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -1
Query: 88 FEYDRMCRFSQKPAWLRVFLFPVPINNNKASFDSLASVDSLNSVQVFPFEEYS 140
F D CR +P +L + VPI+ + S S + NS+ F FE +S
Sbjct: 392 FSLDGTCRQKVEPLFLSKVKYSVPISTSCCSXSSTRV*NPGNSIICFLFELFS 234
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.139 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,295,134
Number of Sequences: 63676
Number of extensions: 138137
Number of successful extensions: 963
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of query: 198
length of database: 12,639,632
effective HSP length: 92
effective length of query: 106
effective length of database: 6,781,440
effective search space: 718832640
effective search space used: 718832640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Medicago: description of AC124972.1