BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124967.11 + phase: 0
(602 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF425356 similar to PIR|T08400|T08 late embryonic abundant prote... 82 5e-16
TC231367 similar to PIR|T08400|T08400 late embryonic abundant pr... 73 4e-13
BG725524 similar to GP|5091614|gb|A Contains a PF|00561 alpha/be... 39 0.007
CD414656 30 4.0
TC219657 weakly similar to UP|AROK_ARATH (Q9SJ05) Probable shiki... 29 6.8
TC209029 similar to GB|BAB10719.1|10177251|AB007644 receptor pro... 29 6.8
CA938791 28 8.9
BG509439 28 8.9
TC227639 similar to UP|E74B_DROME (P11536) Ecdysone-induced prot... 28 8.9
>BF425356 similar to PIR|T08400|T08 late embryonic abundant protein EMB8
homolog F18B3.70 - Arabidopsis thaliana, partial (31%)
Length = 390
Score = 82.4 bits (202), Expect = 5e-16
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 3/130 (2%)
Frame = +1
Query: 141 ELKYQRVCLSASDGGVVSLDWPVELDLEEERGL--DSTLLIV-PGTPQGSMDDNIRVFVI 197
+++ +R CL DGG V+LDW ++R L DS LLI+ PG GS D +R ++
Sbjct: 13 DVRLRRECLRTQDGGAVALDWVSG----DDRRLPPDSPLLILLPGLTGGSGDAYVRHMLV 180
Query: 198 DALKRGFFPVVMNPRGCASSPITTPRLFTAADSDDICTAITYINKARPWTTLMGVGWGYG 257
A +G VV N RGC SP+TTP+ ++A+ D+ ++++ P + + W G
Sbjct: 181 RARSKGCRVVVFNSRGCGDSPVTTPQFYSASFLGDMREVVSHVTGRYPNANVYAIXWSLG 360
Query: 258 ANMLTKYLAE 267
AN+L YL +
Sbjct: 361 ANILVHYLGQ 390
>TC231367 similar to PIR|T08400|T08400 late embryonic abundant protein EMB8
homolog F18B3.70 - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (39%)
Length = 881
Score = 72.8 bits (177), Expect = 4e-13
Identities = 42/132 (31%), Positives = 77/132 (57%), Gaps = 3/132 (2%)
Frame = +3
Query: 275 TAATCIDNPFDLDEATRTFP--YHHVTDQKLTRGLINILQTNKALFQGKAKGXDVGKALL 332
+ A + NPF+L A F ++ + D+ L++ L I + LF+ ++ A
Sbjct: 6 SGAVSLCNPFNLVVADEDFRKGFNIIYDKVLSKALRKIFNKHVLLFEDIGGEYNIPLAAN 185
Query: 333 AKSVRDFEEAISMVSYGFVDIEDFYTKASTRNMIKDIKIPVLFIQSDNG-MVPAFSVPRN 391
AKSVR+F++A++ VS+GF ++++Y+ +S+ + IK ++ P+L IQ+ N + P +PR
Sbjct: 186 AKSVREFDDALTRVSFGFKSVDEYYSNSSSSDSIKHVRTPLLCIQAANDPIAPNRGIPRE 365
Query: 392 LIAENPFTSLLL 403
I ENP L++
Sbjct: 366 DIEENPNCLLIV 401
>BG725524 similar to GP|5091614|gb|A Contains a PF|00561 alpha/beta hydrolase
fold domain. {Arabidopsis thaliana}, partial (18%)
Length = 308
Score = 38.9 bits (89), Expect = 0.007
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +2
Query: 253 GWGYGANMLTKYLAEVGERTPLTAATCIDNPFDLDEATRTFPYHHVT---DQKLTRGLIN 309
G GAN+L KYL E GE P+ A + +P+DL R HV D+ L GL
Sbjct: 8 GTRIGANILIKYLGEDGENIPVAGAVAVCSPWDLLIGDRFITRRHVQKFYDKALAIGLKG 187
Query: 310 ILQTNKALF 318
+ + A F
Sbjct: 188 YAKLHPASF 214
>CD414656
Length = 635
Score = 29.6 bits (65), Expect = 4.0
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 12 PAKPFPSRQFRLYKRRRLKIKASFPVPPPSP 42
P +P P R RL RRR S PPPSP
Sbjct: 619 PPRPTPPRTRRLSDRRRTPPARSLCSPPPSP 527
>TC219657 weakly similar to UP|AROK_ARATH (Q9SJ05) Probable shikimate kinase,
chloroplast precursor , partial (56%)
Length = 864
Score = 28.9 bits (63), Expect = 6.8
Identities = 22/60 (36%), Positives = 30/60 (49%)
Frame = -1
Query: 38 PPPSPFENLFNTLISQCSSVNSIDFIAPSLGFASGSALFFSRFKSSQNSDVGEWILFASP 97
PPPSPF+ L S CSS + IA S+G S ++L S N + + +ASP
Sbjct: 537 PPPSPFKKL-----SICSSAS----IAISVGDNSDTSLLLSFIAIFFNETLALALAYASP 385
>TC209029 similar to GB|BAB10719.1|10177251|AB007644 receptor protein
kinase-like protein {Arabidopsis thaliana;} , partial
(9%)
Length = 578
Score = 28.9 bits (63), Expect = 6.8
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Frame = -2
Query: 387 SVPRN-LIAENPFTSLLLCSCLSSSVMD----TDTS----ALSWCQLVTVEVAI*LSIFY 437
S P N ++ + T+ + CL SS + T TS +LS CQ+ +++ L ++
Sbjct: 412 SEPSNPTLSSHETTNSIWGLCLGSSSIHLQAITSTSKSCFSLSLCQMTESKISCSLFSYF 233
Query: 438 MCN---FGMHMQWLAAVELGLLKGRHPLLTDIDLTIIPSK 474
+CN + ++WL +GL R T L I P K
Sbjct: 232 ICNTQDTRLLLRWLTVTSIGLRPVRSSTRTTPKL*ISPLK 113
>CA938791
Length = 428
Score = 28.5 bits (62), Expect = 8.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 143 KYQRVCLSASDGGVVSLDWPVELDL 167
KY+R + DGG V+LDW + D+
Sbjct: 306 KYRRQLFTTPDGGTVALDWLLSSDV 380
>BG509439
Length = 441
Score = 28.5 bits (62), Expect = 8.9
Identities = 26/87 (29%), Positives = 38/87 (42%), Gaps = 2/87 (2%)
Frame = -3
Query: 28 RLKIKASFPVPPPSPFENLFNTLISQCSSVNSIDFIAPSLGFASGSALFFSR--FKSSQN 85
RL++ ++ P+P + LI C S + PSL G LF + +
Sbjct: 343 RLRVFSAIPLPA--------SLLIMSCQS------LPPSLSSFPGMTLFLFE*VLSTGLS 206
Query: 86 SDVGEWILFASPTPFNRFVLLRCPSIS 112
S+ ILFAS + F LL PSI+
Sbjct: 205 SNSNSIILFASSSACRLFPLLLKPSIT 125
>TC227639 similar to UP|E74B_DROME (P11536) Ecdysone-induced protein 74EF
isoform B (ETS-related protein E74B), partial (3%)
Length = 1387
Score = 28.5 bits (62), Expect = 8.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 73 SALFFSRFKSSQNSDVGEWILFASPTPFNRFVLLRCPSIS 112
+++ R SQNS G ASP+PF F L CPS++
Sbjct: 984 NSILHDRSFISQNSSPG-----ASPSPFQNFEL*ICPSVT 880
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,178,459
Number of Sequences: 63676
Number of extensions: 361829
Number of successful extensions: 2002
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2001
length of query: 602
length of database: 12,639,632
effective HSP length: 103
effective length of query: 499
effective length of database: 6,081,004
effective search space: 3034420996
effective search space used: 3034420996
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC124967.11