TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124966.11 - phase: 0 
         (447 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarit...    82  5e-16
TC224534 similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment), p...    42  7e-04
TC212187 weakly similar to UP|Q6USA0 (Q6USA0) Transposase (Fragm...    40  0.003
TC234723 similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980...    38  0.008
TC210984                                                               33  0.26
TC204588 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosida...    29  3.8
TC219463 homologue to UP|Q94KL5 (Q94KL5) BEL1-like homeobox 4, p...    28  8.4

>TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarity to
           ribosomal protein, partial (24%)
          Length = 689

 Score = 82.0 bits (201), Expect = 5e-16
 Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 14/208 (6%)
 Frame = +3

Query: 189 LQRILHVSEMRGFPGMIGSIDCMHWEWKNCPKAWEGQFTRGDKGTTTVILEAVASHDLWI 248
           +Q ++ + E+RGF  M+GSID +HW+ K C  AW+GQ+  GD G  T++L+ V S  L I
Sbjct: 12  IQYLMQICEIRGFQSMLGSIDYLHWK*KTCLVAWKGQYCHGD-GPPTIMLKVVVSQYLRI 188

Query: 249 WHAFFGCPGTLNDINVLDRSPVFDDVEQGKAPRVNFFVNQRP-----YNMAYYLA--DGI 301
            HA+ G  G+ N+INVL+ S V      G++P         P      +  +YL+  D  
Sbjct: 189 *HAYLGVEGSNNNINVLNESCV*RRY-GGRSPYCTICS**NPI*HGVLSDIWYLSRLDDA 365

Query: 302 YPSYPTFVKSIRLPQSEPDKLFAKHQESCRKDIERAFGVLQARFKIIREPARLWDIADLG 361
              +P  ++S +       K+      S +K     +      F ++R     W    L 
Sbjct: 366 CEDHPKAIRS*K-------KIVYSISRSNKKGSHLKY------FNLVRN--YTWSCVWLE 500

Query: 362 -------IIMRSCIILHNMIVEDERDTY 382
                    M  CIILHNMIV+DE  TY
Sbjct: 501 HEHISSIYYMYVCIILHNMIVKDEPHTY 584


>TC224534 similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment), partial (50%)
          Length = 968

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
 Frame = +1

Query: 292 NMAYYLADGIYPSYPTFVKSI------------RLPQSEPDKLFAKHQESCRKDIERAFG 339
           N  Y+L D  Y + P F+                 PQ+  + LF     S +  IER+FG
Sbjct: 472 NGKYFLVDAGYTNGPGFLTPY*RTRYHRNEWIGNTPQNYKE-LFNLRHASAKNVIERSFG 648

Query: 340 VLQARFKIIREPARLWDIADLGIIMRSCIILHNMIVEDER 379
           VL+ R+ I+R P+  +DI     I+ +C +L N I ++++
Sbjct: 649 VLKKRWSILRTPS-FFDIKTQIRIINTCFMLRNFIRDEQQ 765


>TC212187 weakly similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment),
           partial (45%)
          Length = 973

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 36/128 (28%), Positives = 59/128 (45%), Gaps = 23/128 (17%)
 Frame = +1

Query: 295 YYLADGIYPSYPTFVKSIR-----LPQSEPD-------KLFAKHQESCRKDIERAFGVLQ 342
           +YL D  YP++  F+ S       LPQ           ++F  +  S +  IERAFG+ +
Sbjct: 514 FYLVDSCYPTFMGFLGSYNKTRYHLPQFRIGPRIRGRVEVFNYYHSSLQSTIERAFGLCK 693

Query: 343 ARFKIIREPARLWDIADLGIIMRSCIILHNMIVE-----------DERDTYAQRWTDFEQ 391
           AR+KI+   +  + +     I+ +C+ +HN I             DE + Y    TD ++
Sbjct: 694 ARWKILGNMSP-FALKTQNQIIVACMTIHNFIQRNDKSDGEFDSLDEDNEYID--TDKDE 864

Query: 392 SEGSGSST 399
           SE   S+T
Sbjct: 865 SEVGPSTT 888


>TC234723 similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980), partial
           (24%)
          Length = 837

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 39/171 (22%), Positives = 67/171 (38%), Gaps = 23/171 (13%)
 Frame = +2

Query: 295 YYLADGIYPSYPTFVK-------------SIRLPQSEPDKLFAKHQESCRKDIERAFGVL 341
           YY+ D  Y + P FV              S   PQ +  +LF +     R  I+R FG+L
Sbjct: 143 YYIVDSKYQNVPGFVAPYSSTPYYSKEFLSDYHPQ-DASELFNQRHSLLRHVIDRTFGIL 319

Query: 342 QARFKIIREPARLWDIADLGIIMRSCIILHNMIVEDERDTYAQRWTDFEQSEGSGSSTAQ 401
           +ARF I+           + +++ +C  LHN I  ++ D +  +   +E+       +  
Sbjct: 320 KARFPILMSAPSYPLQTQVKLVVAAC-ALHNYIRREKPDDWLFKM--YEEGSFPMEESQP 490

Query: 402 PYSTEVLPTFANHARARSELRDPNVH----------HELQADLVKHIWTKF 442
           P   EV P      + +     P+VH           +L+  +   +W  F
Sbjct: 491 PLEMEVPPKMDVETQTQ-----PSVHTFDSEEIALASQLRDSIATEMWNDF 628


>TC210984 
          Length = 1085

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +3

Query: 321 KLFAKHQESCRKDIERAFGVLQARFKIIREPARLWDIADLGIIMRSCIILHNMIVEDER- 379
           +LF     S R  IER FG+ ++RF I +            +++ +C  LHN + ++ R 
Sbjct: 426 ELFNLRHASLRNVIERIFGIFKSRFTIFKSAPPFLFKTQAELVL-ACAALHNFLRKECRS 602

Query: 380 DTYAQRWTDFEQSEGSGSSTAQP 402
           D +    TD    E S SS+  P
Sbjct: 603 DEFPVEPTD----ESSSSSSVLP 659


>TC204588 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosidase, partial
            (84%)
          Length = 2003

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 22/79 (27%), Positives = 32/79 (39%)
 Frame = -3

Query: 232  GTTTVILEAVASHDLWIWHAFFGCPGTLNDINVLDRSPVFDDVEQGKAPRVNFFVNQRPY 291
            GT T +        LWI   FFGC    + I   D S VF D +       N F +    
Sbjct: 1752 GTVTFMSFPTF*SRLWIGTTFFGCEKEFSSITFADVSTVFVDPD-----NCNEFGSSPSR 1588

Query: 292  NMAYYLADGIYPSYPTFVK 310
             +  + A  + P + TF++
Sbjct: 1587 EILRFTA--VVPKFTTFIR 1537


>TC219463 homologue to UP|Q94KL5 (Q94KL5) BEL1-like homeobox 4, partial (21%)
          Length = 1111

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 17/54 (31%), Positives = 26/54 (47%)
 Frame = +3

Query: 329 SCRKDIERAFGVLQARFKIIREPARLWDIADLGIIMRSCIILHNMIVEDERDTY 382
           +CR+ +    G L+A FK+ + P                 ILH+MI++D  DTY
Sbjct: 699 TCRRKLRSPLGTLEA-FKLNQFP-----------------ILHHMIIKDNNDTY 806


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.323    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,983,622
Number of Sequences: 63676
Number of extensions: 269072
Number of successful extensions: 1283
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of query: 447
length of database: 12,639,632
effective HSP length: 100
effective length of query: 347
effective length of database: 6,272,032
effective search space: 2176395104
effective search space used: 2176395104
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)