BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124965.10 + phase: 0
(1569 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP595172 polyprotein [Glycine max] 1945 0.0
TC211627 132 5e-52
CO982196 162 5e-44
NP395548 reverse transcriptase [Glycine max] 176 9e-44
NP395547 reverse transcriptase [Glycine max] 162 1e-39
BI425021 157 3e-38
TC222980 similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (4%) 153 7e-37
AW570005 152 1e-36
CF922488 147 3e-35
BQ627806 87 6e-35
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 144 3e-34
AW507721 weakly similar to GP|27764548|gb polyprotein {Glycine m... 107 7e-33
CD487724 135 2e-31
TC211973 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, parti... 112 1e-29
BI317507 124 2e-28
BI317050 124 3e-28
AW830191 113 6e-25
TC213114 weakly similar to UP|Q8W150 (Q8W150) Polyprotein, parti... 94 1e-24
BI317638 weakly similar to GP|9294238|dbj| contains similarity t... 97 3e-23
TC212592 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, parti... 106 9e-23
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 1945 bits (5038), Expect = 0.0
Identities = 961/1566 (61%), Positives = 1203/1566 (76%), Gaps = 16/1566 (1%)
Frame = +1
Query: 1 MADNTRLKELTTELRRQAEAQ-----------EKSNVENKARFDRLEAMQTASDLRFNQL 49
MADNTR+KE+ EL++ A+A E+ N A+ +++E MQ+ +D +F+QL
Sbjct: 1 MADNTRMKEVYAELKKNADAITRVSDDLQNHIERLEATNHAQMEKIEVMQSTNDSQFSQL 180
Query: 50 SATLERFMQQAPQHNVS-HGNTNSGSSSSVISATVVGSQSTFVGHTQSAVVGKQSTSSMS 108
+A + + +Q+ +S HG +NS +Q SS
Sbjct: 181 NAVMSQVLQRLQNIPMSSHGASNSQK--------------------------EQQRSS-- 276
Query: 109 SQPFQVRHIKLEFPRFNGKHVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQM 168
FQVR +KL+FPRF+GK+V+DWIFKAEQ+F YY TPDA+RLIIASVHL+Q+VVPW+QM
Sbjct: 277 ---FQVRSVKLDFPRFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWYQM 447
Query: 169 VNRSRPFQSWNDFTRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLS 228
+ ++ PF SW FTRALELDFGPS YDCPRA+LFKL Q+ +VNEYY++FTAL NRV GLS
Sbjct: 448 LQKTEPFSSWQAFTRALELDFGPSAYDCPRATLFKLNQSATVNEYYMQFTALVNRVDGLS 627
Query: 229 NDALIDCFVSGLKDELRRDVMLHTPISIVKAVSLAKLFEEKIAANFNPK---QPLKPYTP 285
+A++DCFVSGL++E+ RDV P ++ KAV+LAKLFEEK + K + +T
Sbjct: 628 AEAILDCFVSGLQEEISRDVKAMEPRTLTKAVALAKLFEEKYTSPPKTKTFSNLARNFTS 807
Query: 286 AQPHQHRAPFNPTRNDQNQTIEKAPNLP-LLPTPPTRPMSHLQKNPAIKRISPAEMQLRR 344
+ P +ND + PNLP LLPTP T+P + +N IK+ISPAE+QLRR
Sbjct: 808 NTSATQKYPPTNQKNDNPK-----PNLPPLLPTPSTKPFN--LRNQNIKKISPAEIQLRR 966
Query: 345 EKGLCYFCDDKFSFSHKCPNKQLMLLELDDDLDPPDTPSQTAVTSDTETQEVAEHHLSLN 404
EK LCYFCD+KFS +HKCPN+Q+MLL+L++ D T Q VT + + HHLSLN
Sbjct: 967 EKNLCYFCDEKFSPAHKCPNRQVMLLQLEET-DEDQTDEQVMVTEEANMDDDT-HHLSLN 1140
Query: 405 ALKGATGMGVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNG 464
A++G+ G+G IRF G +G I+V IL+DGGSS++FIQPR+ L LP+E VLVGNG
Sbjct: 1141 AMRGSNGVGTIRFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVEPAPNLRVLVGNG 1320
Query: 465 QHMKAEGVVRKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFY 524
Q + AEG+V++L L +Q ++ VP YLL ++G+DVILG+ WLA+LGPHVADY+ LKF+
Sbjct: 1321 QILSAEGIVQQLPLHIQGQEVKVPVYLLQISGADVILGSTWLATLGPHVADYAALTLKFF 1500
Query: 525 MDGKFVTLQGESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEP 584
+ KF+TLQGE +++ +QL+HFRRLQ+ +I E F IQ I V ED + +P NI+P
Sbjct: 1501 QNDKFITLQGEGNSEATQAQLHHFRRLQNTKSIEECFAIQLIQKEVPEDTLKDLPTNIDP 1680
Query: 585 EMATLLHTYREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDM 644
E+A LLHTY ++F +P LPP RE H I LK+G+ PVKV+PYRYPH+QK+QIEKM+Q+M
Sbjct: 1681 ELAILLHTYAQVFAVPASLPPQREQDHAIPLKQGSGPVKVRPYRYPHTQKDQIEKMIQEM 1860
Query: 645 LEEGIIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGA 704
L +GIIQPS SPFS PI+LVKKKDG+WR CTDYRALNAIT+KDSFPMPTVDELLDELHGA
Sbjct: 1861 LVQGIIQPSNSPFSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELHGA 2040
Query: 705 QYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQP 764
QYF+KLDLRSGYHQIL++PEDR+KTAFRTH GHYEWLVMPFGLT+APATFQ LMN++FQ
Sbjct: 2041 QYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQF 2220
Query: 765 LLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVV 824
LRK VLVFFDDIL+YS SW HLKH+E V Q L Q+ L+A+LSKCSFG TEV+YLGH V
Sbjct: 2221 ALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKV 2400
Query: 825 SGSGVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAF 884
SG GV+M+ KV AVL+WPTP N+KQLRGFLGLTGYYRRFI+SYA IAGPLT+LL+KD+F
Sbjct: 2401 SGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAGPLTDLLQKDSF 2580
Query: 885 KWDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKK 944
W+ AF LK+A+T APVL LPDFSQPF+LETDASG GVGAVL Q GHPIAYFSKK
Sbjct: 2581 LWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLGQNGHPIAYFSKK 2760
Query: 945 MASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWL 1004
+A RMQ QSAYTRE AIT AL+KFRHYLLG+KFI+RTDQ+SLKSL+DQSLQTPEQQAWL
Sbjct: 2761 LAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWL 2940
Query: 1005 HKFIGFDFQIEYKPGKDNQAADALSRVMSLSWSAPEHDFLEQLKKEIGNDSHLQTIVQQC 1064
HKF+G+DF+IEYKPGKDNQAADALSR+ L+WS P FLE+L+ + +D HL+ ++ +
Sbjct: 2941 HKFLGYDFKIEYKPGKDNQAADALSRMFMLAWSEPHSIFLEELRARLISDPHLKQLM-ET 3117
Query: 1065 VNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQ 1124
D +Y V+EGLLYWK R+VIP E ++++IL+EYH +PIGGHAG+TRTLAR+ AQ
Sbjct: 3118 YKQGADASHYTVREGLLYWKDRVVIPAEEEIVNKILQEYHSSPIGGHAGITRTLARLKAQ 3297
Query: 1125 FYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFG 1184
FYWP M++ ++ +I+ C+ CQQAKS NT AGLLQPLPIP+QVW+DV MDFITGLP SFG
Sbjct: 3298 FYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQVWEDVAMDFITGLPNSFG 3477
Query: 1185 FTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFW 1244
+VIMVV+DRL+KYAHF+PLKADY+++ VAEAF++++VKLHG+P+SI+SDRD+VFTS FW
Sbjct: 3478 LSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVSDRDRVFTSTFW 3657
Query: 1245 QHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNT 1304
QHLF++QGTTL+MS+ YHPQ+DGQSE +NKCLEMYLRCFT+++PK W KAL W E WYNT
Sbjct: 3658 QHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAEFWYNT 3837
Query: 1305 FLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVM 1364
H SLGM+PF+ALYGREPP LTR + + DP EV++QL DRD LL +LK NL RAQQVM
Sbjct: 3838 AYHMSLGMTPFRALYGREPPTLTRQACSIDDPAEVREQLTDRDALLAKLKINLTRAQQVM 4017
Query: 1365 KSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYKL 1424
K ADKKR DVSF++GD+VLVKLQPYRQ S LRKN KL MRYFGPF V+AK+G VAYKL
Sbjct: 4018 KRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKL 4197
Query: 1425 QLPETARIHPVFHVSQLKIFKGLTTEPYFPLPLTTMEEGPVIQPEVILNVRNIIRGDRKV 1484
+LP ARIHPVFHVSQLK F G +PY PLPLT E GPV+QP IL R IIRG ++
Sbjct: 4198 ELPSAARIHPVFHVSQLKPFNGTAQDPYLPLPLTVTEMGPVMQPVKILASRIIIRGHNQI 4377
Query: 1485 EQLLVKWKDMQNSEATWEDKQEMLDSYPNLNLEDKIVLEGEGNVMSVEGPIDKSGANDDM 1544
EQ+LV+W++ EATWED +++ SYP NLEDK+V +GEGNV + +K +
Sbjct: 4378 EQILVQWENGLQDEATWEDIEDIKASYPTFNLEDKVVFKGEGNVTNGMSRGEKVNNTAES 4557
Query: 1545 ANKKGL 1550
++++GL
Sbjct: 4558 SSERGL 4575
>TC211627
Length = 1034
Score = 132 bits (332), Expect(2) = 5e-52
Identities = 76/209 (36%), Positives = 113/209 (53%)
Frame = +3
Query: 1318 LYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVMKSNADKKRKDVSF 1377
+YG+ PP L YS S V L + L L + Q MK AD R+D++F
Sbjct: 243 MYGKPPPALPLYSAGTSTVEAVDAILHSLATIHHTLTCRLQKYQDSMKRIADSHRRDLTF 422
Query: 1378 EVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYKLQLPETARIHPVFH 1437
+GD V V+L PYRQ+S+ KL R++GP+ + A+VG VAY+LQLP T++IHP+FH
Sbjct: 423 NIGDWVYVRL*PYRQTSIQ-STYTKLSKRFYGPYQIQARVGQVAYRLQLPPTSKIHPIFH 599
Query: 1438 VSQLKIFKGLTTEPYFPLPLTTMEEGPVIQPEVILNVRNIIRGDRKVEQLLVKWKDMQNS 1497
VS LK+ G LP + P++QP L+ + + Q+LV+W ++
Sbjct: 600 VSLLKVHHGPIPPELLALPPFSTTNHPLVQPLQFLDWKMDESTTPPIPQVLVQWTNLAPE 779
Query: 1498 EATWEDKQEMLDSYPNLNLEDKIVLEGEG 1526
+ TWE ++ D Y +LEDK+ + G
Sbjct: 780 DTTWESWTQLKDIY---DLEDKVCFQTGG 857
Score = 92.8 bits (229), Expect(2) = 5e-52
Identities = 40/79 (50%), Positives = 52/79 (65%)
Frame = +2
Query: 1238 VFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTW 1297
+F S W LF + GT L ST YHPQTDGQ+E +N+ LE YLR F +P+ WFK L+
Sbjct: 2 IFISGLWHELFHISGTKLRFSTAYHPQTDGQTEVINRILEQYLRAFVHDHPQHWFKFLSL 181
Query: 1298 VELWYNTFLHTSLGMSPFK 1316
E YNT +H+ +G SPF+
Sbjct: 182 AE*CYNTSVHSGIGFSPFE 238
>CO982196
Length = 812
Score = 162 bits (409), Expect(2) = 5e-44
Identities = 85/200 (42%), Positives = 120/200 (59%)
Frame = +1
Query: 1044 LEQLKKEIGNDSHLQTIVQQCVNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEY 1103
L ++EI L I Q + T Y ++ G LY+K RLV+ S I +LKE
Sbjct: 211 LADWEEEIQAYLELYEIYQGILTKTTKKPGYAIRGGKLYFKDRLVLSKNSTKIPLLLKEL 390
Query: 1104 HDTPIGGHAGVTRTLARVTAQFYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPI 1163
D+P+GGH+G RT RV +W M++ + ++ AC C++ K+ + AGLL LPI
Sbjct: 391 QDSPLGGHSGFFRTFKRVANVVFWQGMKKTTRDYVAACEICRRNKTSTLSPAGLL*LLPI 570
Query: 1164 PEQVWDDVTMDFITGLPLSFGFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVK 1223
P +VW D++MDFI GLP + G I+VVVDRL+KYAHF L Y+ + VAE F+ +V+
Sbjct: 571 PTKVWTDISMDFIGGLPKAQGKDNILVVVDRLTKYAHFFALSHPYTAKEVAELFIKELVR 750
Query: 1224 LHGMPKSIISDRDKVFTSKF 1243
LHG P SI+SD ++F S F
Sbjct: 751 LHGFPASIVSDXXRLFMSLF 810
Score = 36.2 bits (82), Expect(2) = 5e-44
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 970 RHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAW 1003
RHY +G KFI+RT+ +S K L +Q L + EQ W
Sbjct: 53 RHYPVGKKFIIRTN*RSSKFLNEQRLMSEEQFKW 154
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 176 bits (445), Expect = 9e-44
Identities = 95/254 (37%), Positives = 144/254 (56%), Gaps = 19/254 (7%)
Frame = +1
Query: 637 IEKMVQDMLEEGIIQP-SLSPFSSPIILVKKKDG------------------TWRCCTDY 677
+ K V +LE G+I P S S + SP+++V KK+G +W+ C DY
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 678 RALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGH 737
R LN T KD FP+P +D++L+ L G Y+ LD GY+QI++ P+D++K AF G
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 738 YEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQI 797
+ + +PFGL +AP TFQ M +F ++ K + VF DD V+ PS S LK +E+V Q
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540
Query: 798 LSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIKVIAVLEWPTPTNLKQLRGFLGL 857
+ L KC F + E LGH +S G+ +D+ K+ + + P P+N+K +R FLG
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720
Query: 858 TGYYRRFIRSYATI 871
+YRRFI+ + +
Sbjct: 721 ARFYRRFIKDFTKV 762
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 162 bits (409), Expect = 1e-39
Identities = 92/254 (36%), Positives = 137/254 (53%), Gaps = 19/254 (7%)
Frame = +1
Query: 637 IEKMVQDMLEEGIIQP-SLSPFSSPIILVKKKDGT------------------WRCCTDY 677
+ K V +LE G+I P S S + SP+ +V KK G WR C DY
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 678 RALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGH 737
R LN T KD +P+P +D++L L ++ LD SGY+QI + P+D++KTAF
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 738 YEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQI 797
+ + MPFGL +A TFQR M +F ++ KC+ VF DD + S+ + L ++E V Q
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540
Query: 798 LSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIKVIAVLEWPTPTNLKQLRGFLGL 857
++ L KC F + E LGH +S G+ + K K+ + + P P N+K + FLG
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720
Query: 858 TGYYRRFIRSYATI 871
G+YRRFI+ + +
Sbjct: 721 VGFYRRFIKDFTKV 762
>BI425021
Length = 426
Score = 157 bits (397), Expect = 3e-38
Identities = 72/142 (50%), Positives = 96/142 (66%)
Frame = -1
Query: 1158 LQPLPIPEQVWDDVTMDFITGLPLSFGFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAF 1217
L PLP+P++ W+D++MDFI GLP G T I VVV+R SK H L ++ VA F
Sbjct: 426 LCPLPVPQRPWEDLSMDFIVGLPPYHGHTTIFVVVNRFSKGIHLGTLPTSHTAHMVASLF 247
Query: 1218 VNYVVKLHGMPKSIISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLE 1277
+N V+KLHG P+SI+SDRD +F S FWQ LF++ GT L MS+ YHPQTDGQ+E +N+ +E
Sbjct: 246 LNIVIKLHGFPRSIVSDRDPLFISHFWQDLFRLSGTVLRMSSAYHPQTDGQTEVLNRVIE 67
Query: 1278 MYLRCFTFKNPKTWFKALTWVE 1299
YLR F P+ + + WVE
Sbjct: 66 QYLRAFVHGRPRNLGRFIPWVE 1
>TC222980 similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (4%)
Length = 662
Score = 153 bits (386), Expect = 7e-37
Identities = 68/118 (57%), Positives = 93/118 (78%)
Frame = +3
Query: 106 SMSSQPFQVRHIKLEFPRFNGKHVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPW 165
+M++ PFQVR++K++FP +G VL WIFKAEQ+F Y+ TP +RLIIAS+HL++EVVP
Sbjct: 309 AMNNHPFQVRNVKIDFPILDGSDVLQWIFKAEQFFNYHKTPGEQRLIIASIHLDKEVVPC 488
Query: 166 FQMVNRSRPFQSWNDFTRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNR 223
+QM+ R F++W FTRALE +FGPS Y+CPR+ LFKL + SV YY++FTAL+NR
Sbjct: 489 YQMMTRENSFKTWIAFTRALETEFGPSPYECPRSQLFKLAKIGSVQSYYVQFTALANR 662
>AW570005
Length = 413
Score = 152 bits (384), Expect = 1e-36
Identities = 72/137 (52%), Positives = 92/137 (66%)
Frame = -2
Query: 843 PTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKWDESTAKAFDTLKQAIT 902
P P + LRGFL LTG+YRRFI+ YA +A PL++LL KD+F W AF LK +T
Sbjct: 412 PPPRTARSLRGFLRLTGFYRRFIKGYAAMAAPLSHLLTKDSFVWSPEADVAFQALKNVVT 233
Query: 903 TAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASRMQLQSAYTREFYAI 962
VL LPDF++PF +ETDASG+ +GAVLSQ GHPIA+FSK+ ++ S Y E AI
Sbjct: 232 NTLVLALPDFTKPFTVETDASGSDMGAVLSQEGHPIAFFSKEFCPKLVRSSTYVHELAAI 53
Query: 963 TTALAKFRHYLLGHKFI 979
T + K+R YLLGH +
Sbjct: 52 TNVVKKWRQYLLGHHLV 2
>CF922488
Length = 741
Score = 147 bits (372), Expect = 3e-35
Identities = 92/246 (37%), Positives = 132/246 (53%), Gaps = 1/246 (0%)
Frame = +3
Query: 664 VKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSGYHQILLKP 723
V K+DG C DYR LN + KD FP+P ++ L+D F+ +D SGY+QI + P
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 724 EDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFDDILVYSPS 783
ED +KT F T G + + M FGL + AT+QR M LF ++ K + V+ DD++V S +
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362
Query: 784 WHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIKVIAVLEWP 843
HL ++ +F+ L + L +KC F + + L + S G+ +D KV +LE
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542
Query: 844 TPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAF-KWDESTAKAFDTLKQAIT 902
P KQ++GFLG Y RFI PL LL K+ F KWD AF+ +KQ +
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLI 722
Query: 903 TAPVLV 908
VLV
Sbjct: 723 NPHVLV 740
>BQ627806
Length = 435
Score = 87.0 bits (214), Expect(2) = 6e-35
Identities = 39/84 (46%), Positives = 57/84 (67%)
Frame = +1
Query: 937 PIAYFSKKMASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQ 996
P+ + S++ S Y RE AIT A+ K+R YLLGH F++ TD +SLK L+ Q++Q
Sbjct: 181 PLPFSFMPFCSKLLRASTYVRELAAITVAVKKWRQYLLGHHFVILTDHRSLKELMSQAVQ 360
Query: 997 TPEQQAWLHKFIGFDFQIEYKPGK 1020
TPEQQ +L + +GFD+ I+Y+ GK
Sbjct: 361 TPEQQIYLARLMGFDYTIQYRAGK 432
Score = 80.9 bits (198), Expect(2) = 6e-35
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = +3
Query: 878 LLKKDAFKWDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHP 937
LL KD F W+E +AF LK A+ APVL LPDF+ FV+ETDASG G+GA+LSQ HP
Sbjct: 3 LLVKDQFHWNEEADRAFSQLKLALCQAPVLGLPDFNSSFVVETDASGIGMGAILSQNHHP 182
Query: 938 IAYF 941
+A+F
Sbjct: 183 LAFF 194
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 144 bits (363), Expect = 3e-34
Identities = 73/163 (44%), Positives = 103/163 (62%), Gaps = 1/163 (0%)
Frame = +1
Query: 843 PTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKD-AFKWDESTAKAFDTLKQAI 901
PT ++ +R F GL +YRRF+ +++T+A PL L+KK+ AF W E +AF LK+ +
Sbjct: 97 PTLKSVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLKEKL 276
Query: 902 TTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASRMQLQSAYTREFYA 961
T APVL LPDFS+ F LE DASG GV AVL QGGHPIAYFS+K+ S Y +E YA
Sbjct: 277 TKAPVLALPDFSKTFELECDASGVGVRAVLLQGGHPIAYFSEKLHSATLNYPTYDKELYA 456
Query: 962 ITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWL 1004
+ A + H+L+ +F++ +D +SLK + +S W+
Sbjct: 457 LIRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKWV 585
Score = 33.5 bits (75), Expect = 0.75
Identities = 15/42 (35%), Positives = 24/42 (56%)
Frame = +2
Query: 812 FGITEVEYLGHVVSGSGVAMDKIKVIAVLEWPTPTNLKQLRG 853
F + + + G VV +GV MD K+ A+ EWP P + ++ G
Sbjct: 2 FCVDNIFFSGFVVGRNGVQMDPEKIKAIQEWPPP*KVWEILG 127
>AW507721 weakly similar to GP|27764548|gb polyprotein {Glycine max}, partial
(3%)
Length = 464
Score = 107 bits (267), Expect(2) = 7e-33
Identities = 49/107 (45%), Positives = 69/107 (63%), Gaps = 1/107 (0%)
Frame = +1
Query: 1053 NDSHLQTIVQQCVNNTMDDINYMVKEGLLYWKHRLVIPMESNLIHQILKEYHDTPIGGHA 1112
ND L I Q C NN +Y++ ++ WK R+++P +S L+ I+ E H + +GGHA
Sbjct: 142 NDESLMKIYQLCSNNAGKSGDYVLHHDVIIWKGRIMLPNDSQLLKMIMTESHASKVGGHA 321
Query: 1113 GVTRTLARVTAQFYWPNMRQHIQKFIEACVTCQQAKSVNTTY-AGLL 1158
G TRT+ R+ AQFYWP MR+ I KF++ CV CQQAK ++ AGLL
Sbjct: 322 GTTRTIVRINAQFYWPKMREDIMKFVQECVICQQAKVTHSLLPAGLL 462
Score = 53.5 bits (127), Expect(2) = 7e-33
Identities = 23/42 (54%), Positives = 32/42 (75%)
Frame = +2
Query: 1004 LHKFIGFDFQIEYKPGKDNQAADALSRVMSLSWSAPEHDFLE 1045
L KFIG+DF I+Y PGK+N ADALSR +++WS P + +L+
Sbjct: 2 LPKFIGYDFIIQYSPGKENIPADALSRSFAMAWSEPSNTWLQ 127
>CD487724
Length = 676
Score = 135 bits (339), Expect = 2e-31
Identities = 75/221 (33%), Positives = 121/221 (53%), Gaps = 3/221 (1%)
Frame = +3
Query: 429 LLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEGVVRKLSLKVQDIDITVP 488
L+DGGS+ +F+Q +V L LP T V+VGNG H+K + + + +Q+I+ V
Sbjct: 33 LVDGGSTHNFVQQPLVSQLGLPCRSTPPLRVMVGNGHHLKCTTICEAIPISIQNIEFLVH 212
Query: 489 AYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGKFVTLQGESDNKPAVSQLNHF 548
Y+LP+ G++++LG WL +LGP + DY+ ++F+ + V L+GES+ + + +
Sbjct: 213 LYVLPIVGANIVLGVQWLKTLGPILVDYNSLSMQFFYQHRLVQLKGESEAQLGLLNHHQL 392
Query: 549 RRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEP---EMATLLHTYREIFQIPKGLPP 605
RRL + F I A++ +N P + P + LL + +FQ P+GLPP
Sbjct: 393 RRLHQTHEPVTYFHI-----AILTENTS--PTSSPPLPQPIQHLLDQFSALFQ*PQGLPP 551
Query: 606 NRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLE 646
RE H I L ++PV ++ Y YPH +IE V ML+
Sbjct: 552 ARETDHHIHLLP*SEPVNMRLY*YPHY*NNEIEHQVNLMLQ 674
>TC211973 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (4%)
Length = 730
Score = 112 bits (280), Expect(2) = 1e-29
Identities = 54/105 (51%), Positives = 75/105 (71%)
Frame = +1
Query: 1338 EVQQQLMDRDKLLVELKENLLRAQQVMKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVAL 1397
EV + ++ RD LL L+ENLL++ +M +N +K+R+D+ + VGD V +K+QPYR+ S+A
Sbjct: 19 EVNKLIIARDGLLATLRENLLKS*DIM*ANTNKRRRDIEYVVGD*VFLKMQPYRRRSLAK 198
Query: 1398 RKNNKLGMRYFGPFTVIAKVGVVAYKLQLPETARIHPVFHVSQLK 1442
R N KL R++ PF V KVG +AYKL LP +IHPVFHVS LK
Sbjct: 199 RINEKLSPRFYAPFQVFNKVGTIAYKLDLPSHIKIHPVFHVSLLK 333
Score = 37.7 bits (86), Expect(2) = 1e-29
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +3
Query: 1454 PLPLTTMEEGPV-IQPEVILNVRNIIRGDRKVEQLLVKWKDMQNSEATWEDKQEMLDSYP 1512
PLP E+ + + +L+ R + G+ KV L++WK++ SE +WE ++ + +
Sbjct: 348 PLPPMLSEDWKLQTYSDSVLDSRELQPGNVKV---LIQWKNLPPSENSWESVAKLQEIFS 518
Query: 1513 NLNLEDKIVLEGEG 1526
+LEDK+ L G G
Sbjct: 519 IYHLEDKVSLLGGG 560
>BI317507
Length = 359
Score = 124 bits (312), Expect = 2e-28
Identities = 59/116 (50%), Positives = 77/116 (65%), Gaps = 1/116 (0%)
Frame = -1
Query: 774 FDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDK 833
F +IL+YSP W SH+ H+ V +L + L A KC F T +EYLGHV+S VAMD
Sbjct: 359 FYNILIYSPDWKSHIMHLTAVLDVLKKERLVANRKKCYFSQTTIEYLGHVISKDCVAMDS 180
Query: 834 IKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIA-GPLTNLLKKDAFKWDE 888
KV +V+EWP P N+K++ FL LTGYYR+FI+ Y +A PLT+L K D FKW +
Sbjct: 179 NKVKSVIEWPVPKNVKRVCSFLRLTGYYRKFIKDYGKLAPRPLTDLTKNDGFKWGD 12
>BI317050
Length = 425
Score = 124 bits (311), Expect = 3e-28
Identities = 59/140 (42%), Positives = 88/140 (62%)
Frame = +3
Query: 117 IKLEFPRFNGKHVLDWIFKAEQYFGYYNTPDAERLIIASVHLEQEVVPWFQMVNRSRPFQ 176
+ L+ PRF+ + IFK Q+F Y+ TP+ ERL + S +L+ E + WFQ + R+
Sbjct: 6 MNLDVPRFDDTNAPTLIFKISQFFDYHRTPEDERLQVTSFYLDGEALSWFQWLYRNDQLT 185
Query: 177 SWNDFTRALELDFGPSIYDCPRASLFKLQQNKSVNEYYLEFTALSNRVYGLSNDALIDCF 236
SW+ F +ALE+ F S+YD PR +LFKL Q SVN + F AL+N + GL L+ CF
Sbjct: 186 SWSSFLQALEMRFAQSMYDDPRGTLFKLTQTGSVNSFLAMFEALANWIVGLPTPFLLSCF 365
Query: 237 VSGLKDELRRDVMLHTPISI 256
+SGL ++RR+V+ P+S+
Sbjct: 366 ISGLLPDIRREVLAMQPLSL 425
>AW830191
Length = 372
Score = 113 bits (283), Expect = 6e-25
Identities = 57/123 (46%), Positives = 78/123 (63%)
Frame = +3
Query: 1280 LRCFTFKNPKTWFKALTWVELWYNTFLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEV 1339
LRC T P+ W K L+W E W+NT + SL ++PFK LYG +PP L + ++ +S EV
Sbjct: 6 LRCLTGTKPQQWPKRLSWAEFWFNTNYNNSLKLTPFKVLYGCDPPHLLKGAIISSTAEEV 185
Query: 1340 QQQLMDRDKLLVELKENLLRAQQVMKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRK 1399
DRD++L +LK NL +AQ MK AD+ R+ + VGD V +KLQPYRQ S+A +
Sbjct: 186 NVMTNDRDQMLHDLKGNLAKAQNQMK-YADRSRRSIPLNVGDWVYLKLQPYRQRSLARKT 362
Query: 1400 NNK 1402
N K
Sbjct: 363 NEK 371
>TC213114 weakly similar to UP|Q8W150 (Q8W150) Polyprotein, partial (7%)
Length = 810
Score = 94.0 bits (232), Expect(2) = 1e-24
Identities = 46/99 (46%), Positives = 65/99 (65%)
Frame = +3
Query: 1364 MKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYK 1423
MK+ AD+ R+ V+ VGD V +KLQPYR S+A ++N KL R++GP+ + ++G+VA++
Sbjct: 3 MKAYADRSRRAVTLSVGDWVYLKLQPYRLKSLAKKRNEKLSPRFYGPYQIKKQIGLVAFE 182
Query: 1424 LQLPETARIHPVFHVSQLKIFKGLTTEPYFPLPLTTMEE 1462
L LP +IHPVFH S LK T P PLPL E+
Sbjct: 183 LDLPPARKIHPVFHASLLKKAVAATANPQ-PLPLMLSED 296
Score = 39.7 bits (91), Expect(2) = 1e-24
Identities = 15/51 (29%), Positives = 32/51 (62%)
Frame = +2
Query: 1474 VRNIIRGDRKVEQLLVKWKDMQNSEATWEDKQEMLDSYPNLNLEDKIVLEG 1524
V+ + + ++L++ +D+ + EATWE + + + +P+ +LEDK+ L G
Sbjct: 323 VKAVHNNSNGIAEVLIQLEDLPDFEATWESVEVIKEQFPSFHLEDKVTLLG 475
>BI317638 weakly similar to GP|9294238|dbj| contains similarity to reverse
transcriptase~gene_id:K11J14.5 {Arabidopsis thaliana},
partial (5%)
Length = 420
Score = 97.4 bits (241), Expect(2) = 3e-23
Identities = 48/108 (44%), Positives = 66/108 (60%)
Frame = -2
Query: 1141 CVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFGFTVIMVVVDRLSKYAH 1200
C+ CQ K LL PL +P + W+D+++DFITGL T I+VVVD SK H
Sbjct: 326 CLDCQHTKYETKRIVDLLCPLLVPHRPWEDLSLDFITGLLPYHVHTAILVVVDHFSKGIH 147
Query: 1201 FMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQHLF 1248
L + ++ TVA F++ V KLHG+P+S++SD D +F S FWQ LF
Sbjct: 146 LGMLPSSHTAHTVACLFIDSVAKLHGLPRSLVSDCDLLFVSHFWQELF 3
Score = 31.2 bits (69), Expect(2) = 3e-23
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 1106 TPIGGHAGVTRTLARVTAQFYWPNMRQHI 1134
T GGH G+ +TLA ++ YW MR +
Sbjct: 420 TTTGGHTGIAKTLA*LSKNIYWFGMRTDV 334
>TC212592 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (4%)
Length = 664
Score = 106 bits (264), Expect = 9e-23
Identities = 62/145 (42%), Positives = 86/145 (58%), Gaps = 2/145 (1%)
Frame = +2
Query: 1385 VKLQPYRQSSVALRK--NNKLGMRYFGPFTVIAKVGVVAYKLQLPETARIHPVFHVSQLK 1442
+KL+P+RQSS + KL R+FGPF V+ +VG VAY+LQLP A++HPVFH S LK
Sbjct: 17 LKLRPHRQSSAKGPEPITGKLSKRFFGPFQVVERVGKVAYRLQLPVDAKLHPVFHCSLLK 196
Query: 1443 IFKGLTTEPYFPLPLTTMEEGPVIQPEVILNVRNIIRGDRKVEQLLVKWKDMQNSEATWE 1502
F+G + PLP T + VI P VIL R + D +V LV+W+ + +ATWE
Sbjct: 197 PFQGNPPDTAAPLPPTLFDHQSVIAPLVILATRTVNDDDIEV---LVQWQGLSPDDATWE 367
Query: 1503 DKQEMLDSYPNLNLEDKIVLEGEGN 1527
E+ + +LEDK++ G N
Sbjct: 368 KWTELCKEF---HLEDKVLPHGPWN 433
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,107,934
Number of Sequences: 63676
Number of extensions: 944936
Number of successful extensions: 5297
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 5190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5266
length of query: 1569
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1459
effective length of database: 5,635,272
effective search space: 8221861848
effective search space used: 8221861848
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Medicago: description of AC124965.10