BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124963.19 - phase: 0 /pseudo
(206 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC209901 weakly similar to UP|Q6RZU4 (Q6RZU4) F-box-like protein... 30 1.0
TC212003 similar to UP|Q9T0A0 (Q9T0A0) Acyl-CoA synthetase-like ... 30 1.0
TC218667 similar to GB|AAP31930.1|30387529|BT006586 At3g09570 {A... 29 1.3
TC219363 similar to UP|Q9FZA1 (Q9FZA1) F3H9.7 protein, partial (... 29 1.3
TC217986 similar to UP|Q9FPQ8 (Q9FPQ8) Homeodomain transcription... 29 1.7
AW396912 similar to GP|15810171|gb| AT3g16857/MUH15_1 {Arabidops... 29 1.7
TC230332 similar to UP|Q9FIL5 (Q9FIL5) Gb|AAB82637.1 (AT5g58960/... 28 3.8
TC230707 similar to UP|Q12937 (Q12937) BS-84, partial (4%) 28 3.8
TC231160 similar to UP|Q9FLJ5 (Q9FLJ5) Exonuclease-like protein,... 28 3.8
TC218238 weakly similar to UP|Q8H0F2 (Q8H0F2) Anthocyanin 3'-glu... 28 3.8
TC232244 similar to UP|O65373 (O65373) F12F1.7, partial (60%) 28 3.8
TC219911 similar to UP|Q6NMK2 (Q6NMK2) At5g49400, partial (33%) 28 3.8
TC223551 28 3.8
AW277611 27 5.0
TC216563 similar to UP|Q05929 (Q05929) EDGP precursor (Fragment)... 27 6.5
TC206255 weakly similar to UP|Q8LPJ3 (Q8LPJ3) Alpha-mannosidase,... 27 6.5
TC206254 similar to UP|Q8LPJ3 (Q8LPJ3) Alpha-mannosidase, partia... 27 6.5
TC203999 27 6.5
BE661458 weakly similar to GP|7767425|gb|A CXC domain protein TS... 27 6.5
TC206256 weakly similar to UP|P94078 (P94078) Alpha-mannosidase ... 27 8.5
>TC209901 weakly similar to UP|Q6RZU4 (Q6RZU4) F-box-like protein, partial
(14%)
Length = 1246
Score = 29.6 bits (65), Expect = 1.0
Identities = 20/63 (31%), Positives = 33/63 (51%)
Frame = +1
Query: 55 TAKALINLSLSTPRMREINLSSHSYISDNLFHNLLYNWRHNLEEVFICNCPNITHGIIFN 114
T K L L+ + M+ +NLS S ISDN + +W L+ + I +C ++ G+ F
Sbjct: 346 TDKGLDTLASACLSMKYVNLSYCSQISDNGL-KAITHWCRQLQAINISHCEGLS-GVGFE 519
Query: 115 SFS 117
+S
Sbjct: 520 RYS 528
>TC212003 similar to UP|Q9T0A0 (Q9T0A0) Acyl-CoA synthetase-like protein
(AT4g23850/T32A16_20) (Long chain acyl-CoA synthetase 4)
, partial (39%)
Length = 793
Score = 29.6 bits (65), Expect = 1.0
Identities = 22/97 (22%), Positives = 44/97 (44%), Gaps = 5/97 (5%)
Frame = -3
Query: 63 SLSTPRMREINLSSHSYISDNLFHNLLYNWRHNLEEVFICNCPNITHGIIFNSFSFPDA- 121
+L++PR + I H +S N+ + R+++ F NC SF+ ++
Sbjct: 488 NLTSPRQKPIEAPCHMNVSSMTLSNICASGRYDMYTSFSVNC----------SFTLSNSR 339
Query: 122 -PPRVKSLVLS---DTGLSQPNIPQPYFLNSLTTIKL 154
P + ++LS +T L P +P Y + ++ + L
Sbjct: 338 LTPAKRVIILSFDINTPLGSPVVPLVYIIVQMSLLFL 228
>TC218667 similar to GB|AAP31930.1|30387529|BT006586 At3g09570 {Arabidopsis
thaliana;} , partial (61%)
Length = 817
Score = 29.3 bits (64), Expect = 1.3
Identities = 17/55 (30%), Positives = 29/55 (51%)
Frame = +3
Query: 137 QPNIPQPYFLNSLTTIKLFSCNISNQFLSSIKVLPLHTLLLGIHLSWFVRLLISA 191
Q ++P YFL LT + FS + F + + V P+H L+ + L + L+ +A
Sbjct: 123 QTHLPSLYFLFFLTYLSFFSLWLYIYFSNKLSVHPIHLLMSLLLLVKALNLICAA 287
>TC219363 similar to UP|Q9FZA1 (Q9FZA1) F3H9.7 protein, partial (44%)
Length = 1156
Score = 29.3 bits (64), Expect = 1.3
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Frame = +1
Query: 33 FQMLEVLDLGHPNLFVDGAHPNTAKALINLSLSTPRMREINLSSHSYISDNLFHNLLYNW 92
F +L HPN HP INL + R++ +SS +N HN ++
Sbjct: 55 FTLLYFFSNPHPN------HP*HILTDINLLVLEQGERDMEISSRLQERENHSHNHNHHH 216
Query: 93 RHNLEEVF------ICNCPNITHGIIFNSFSFPDAPPRVKSLVLSDT 133
HNL + NC + ++ N P P K++ SD+
Sbjct: 217 NHNLPSPMNSPTSNVSNCMSSSNS---NGIQIPTPPLTPKTIPRSDS 348
>TC217986 similar to UP|Q9FPQ8 (Q9FPQ8) Homeodomain transcription factor
KNAT7, partial (90%)
Length = 2071
Score = 28.9 bits (63), Expect = 1.7
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +3
Query: 111 IIFNSFSFPDAPPRVKSLVLSDTGLSQPNIPQ-PYFLNSLTTIKLFSCNISNQFLSSIKV 169
I+FN+F+ P VKSL LS+ + Q + Q P + + TT+ C
Sbjct: 231 IVFNAFASPSFCVYVKSLFLSE--VVQKVVSQIPIYTENDTTVCCVQC------------ 368
Query: 170 LPLHTLLLGIHLSWFVRLLISAASNPPFGP 199
P +L L + +S F LL+ A GP
Sbjct: 369 APCFSLSLSLSISSFYILLLHLAITE*SGP 458
>AW396912 similar to GP|15810171|gb| AT3g16857/MUH15_1 {Arabidopsis
thaliana}, partial (14%)
Length = 408
Score = 28.9 bits (63), Expect = 1.7
Identities = 23/64 (35%), Positives = 27/64 (41%), Gaps = 4/64 (6%)
Frame = -2
Query: 128 LVLSDTGLSQPNIPQPYFLNSLTTIKLFSCNISNQFLSSIKVLPLHTLLLGI----HLSW 183
L +S T LS PN PY L SL N NQ ++ P H L I H +W
Sbjct: 338 LHISQTILSHPNHMLPYILQSLNP------NRFNQVITGTMCHPFHHNLFSIIS*HHNNW 177
Query: 184 FVRL 187
V L
Sbjct: 176 KVHL 165
>TC230332 similar to UP|Q9FIL5 (Q9FIL5) Gb|AAB82637.1 (AT5g58960/k19m22_160),
partial (36%)
Length = 827
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = -1
Query: 154 LFSCNISNQFLSSIKVLP--LHTLLLGIHL 181
LFS +IS++ S+IK+LP LH +L +HL
Sbjct: 515 LFSTSISSESNSTIKLLPQILHLQILHLHL 426
>TC230707 similar to UP|Q12937 (Q12937) BS-84, partial (4%)
Length = 990
Score = 27.7 bits (60), Expect = 3.8
Identities = 23/68 (33%), Positives = 34/68 (49%), Gaps = 2/68 (2%)
Frame = +3
Query: 114 NSFS--FPDAPPRVKSLVLSDTGLSQPNIPQPYFLNSLTTIKLFSCNISNQFLSSIKVLP 171
NSFS P + +KSL+ D + + P +NSLTT++ + N+ SI LP
Sbjct: 117 NSFSGTIPPSITTLKSLLSLDLAHNSLSGYLPNSMNSLTTLRRLDLSF-NKLTGSIPKLP 293
Query: 172 LHTLLLGI 179
+ L L I
Sbjct: 294 SNLLELAI 317
>TC231160 similar to UP|Q9FLJ5 (Q9FLJ5) Exonuclease-like protein, partial
(35%)
Length = 538
Score = 27.7 bits (60), Expect = 3.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 119 PDAPPRVKSLVLSDTGLSQPNIPQPYFLNSLTT 151
P +PP + S LS P +P P L S TT
Sbjct: 173 PSSPPCPSAATASTPPLSPPPLPSPTLLTSFTT 271
>TC218238 weakly similar to UP|Q8H0F2 (Q8H0F2) Anthocyanin
3'-glucosyltransferase, partial (26%)
Length = 936
Score = 27.7 bits (60), Expect = 3.8
Identities = 24/74 (32%), Positives = 35/74 (46%), Gaps = 4/74 (5%)
Frame = -3
Query: 127 SLVLSDTGLSQPNIPQPYFLNSLTTIKLFSCNISNQFLSSIKVL----PLHTLLLGIHLS 182
SL+ + + +S + P L L + S + N ++SS K+L P L LS
Sbjct: 718 SLI*NHSAMS*IDCNYPQALA*LLWLAFCSLSDFNSWISSFKLL*EDPPT*IAFLAASLS 539
Query: 183 WFVRLLISAASNPP 196
F LLIS S+PP
Sbjct: 538 AFALLLISIDSSPP 497
>TC232244 similar to UP|O65373 (O65373) F12F1.7, partial (60%)
Length = 963
Score = 27.7 bits (60), Expect = 3.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 118 FPDAPPRVKSLVLSDTGLSQPNIPQP 143
FP PP + S TG S P++P+P
Sbjct: 406 FPSNPPTAPTASASSTGKSPPSMPKP 483
>TC219911 similar to UP|Q6NMK2 (Q6NMK2) At5g49400, partial (33%)
Length = 906
Score = 27.7 bits (60), Expect = 3.8
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Frame = -3
Query: 59 LINLSLSTPRMREINLSSHSYISDNLF----------HNLLYNWRHNLEEVFICNCPNIT 108
L+ + P + + S HS +S N+F H+ + + NL ++ + NC +
Sbjct: 541 LVTIQHVPPTHQPLCCSRHSSVSFNVFNYASSFSGSFHHQNQSLKQNLNQMILMNCTSCV 362
Query: 109 HGIIFNSFSFPDAPP 123
+SFS PP
Sbjct: 361 FLSSASSFSSVSVPP 317
>TC223551
Length = 426
Score = 27.7 bits (60), Expect = 3.8
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Frame = +1
Query: 73 NLSSHSYISDNLFHNLLYNWRHNLEEVFICNCPNITHGIIFNSFSFPDAPPRVKSLVLSD 132
NL YI+ N F+ N+ +LEE+ I NCP + NS+ P R +S
Sbjct: 139 NLVHLEYITQNCFNG--ENFCKSLEEMTIINCPKL------NSWWKPGTEARPSFEKISK 294
Query: 133 TGLSQPNIPQPYFLNSLTTIKLFSCNIS--NQFLSSIKVLPLH 173
L + + L + L SC + Q SI + LH
Sbjct: 295 LHLHRCPLHTMPLYPRLEEMVLHSCTLKLLRQNTMSIPLTDLH 423
>AW277611
Length = 442
Score = 27.3 bits (59), Expect = 5.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 184 FVRLLISAASNPPFGPFRCS 203
FVR L++A + P GP RCS
Sbjct: 428 FVRTLLTARNGPRIGPCRCS 369
>TC216563 similar to UP|Q05929 (Q05929) EDGP precursor (Fragment), partial
(29%)
Length = 1546
Score = 26.9 bits (58), Expect = 6.5
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 74 LSSHSYISDNLFHNLLYNWRHNLEEVFICNCPNITHGIIFNS 115
L SH + H LL RH+L C PN +H FNS
Sbjct: 39 LFSHGLFHSSHHHLLLLPLRHSLPRSSPCIFPNPSHQRRFNS 164
>TC206255 weakly similar to UP|Q8LPJ3 (Q8LPJ3) Alpha-mannosidase, partial
(11%)
Length = 613
Score = 26.9 bits (58), Expect = 6.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 144 YFLNSLTTIKLFSCNISNQFLSSIKVL 170
+F + LT++ LF C + N FLSS L
Sbjct: 257 WFADKLTSVILFICLLGNTFLSSTVAL 177
>TC206254 similar to UP|Q8LPJ3 (Q8LPJ3) Alpha-mannosidase, partial (28%)
Length = 1342
Score = 26.9 bits (58), Expect = 6.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 144 YFLNSLTTIKLFSCNISNQFLSSIKVL 170
+F + LT++ LF C + N FLSS L
Sbjct: 1297 WFADKLTSVILFICLLGNTFLSSTVAL 1217
>TC203999
Length = 1950
Score = 26.9 bits (58), Expect = 6.5
Identities = 18/49 (36%), Positives = 25/49 (50%)
Frame = +3
Query: 88 LLYNWRHNLEEVFICNCPNITHGIIFNSFSFPDAPPRVKSLVLSDTGLS 136
L+ N++H+L C+ PNI H + F F P SL+ SD LS
Sbjct: 129 LICNYKHSLSLTDSCSKPNIIH--LLPPFHFLFLSP--TSLISSDPSLS 263
>BE661458 weakly similar to GP|7767425|gb|A CXC domain protein TSO1
{Arabidopsis thaliana}, partial (8%)
Length = 588
Score = 26.9 bits (58), Expect = 6.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 134 GLSQPNIPQPYFLNSLTTIKLFSCNISNQFLSSIKVLPL 172
G S+P +PQ YF ++ + F C++ + +S+ +PL
Sbjct: 459 GGSKPGLPQLYFNACGSSSENFMCSLDSSIEASLTEIPL 343
>TC206256 weakly similar to UP|P94078 (P94078) Alpha-mannosidase
(AT3g26720/MLJ15_12), partial (12%)
Length = 540
Score = 26.6 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = -1
Query: 144 YFLNSLTTIKLFSCNISNQFLSS 166
+F + LT++ LF C + N FLSS
Sbjct: 240 WFADKLTSVILFICLLGNTFLSS 172
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,078,755
Number of Sequences: 63676
Number of extensions: 209733
Number of successful extensions: 1741
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1741
length of query: 206
length of database: 12,639,632
effective HSP length: 93
effective length of query: 113
effective length of database: 6,717,764
effective search space: 759107332
effective search space used: 759107332
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Medicago: description of AC124963.19