BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124963.14 + phase: 0
(294 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC220904 homologue to GB|AAS47665.1|44681450|BT011659 At5g03110 ... 116 1e-26
TC231898 similar to UP|Q9T6M2 (Q9T6M2) Cytochrome oxidase subuni... 99 2e-21
BU090741 homologue to GP|19911575|dbj syringolide-induced protei... 39 0.004
TC229195 similar to UP|Q9SJN3 (Q9SJN3) Expressed protein (At2g36... 37 0.011
TC209935 37 0.011
TC211379 similar to UP|Q8S901 (Q8S901) Syringolide-induced prote... 36 0.018
TC231428 UP|Q8S901 (Q8S901) Syringolide-induced protein 14-1-1, ... 36 0.023
TC207926 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase... 35 0.031
BE661294 similar to GP|19699067|gb AT5g20250/F5O24_140 {Arabidop... 33 0.12
TC227815 similar to UP|RIR2_TOBAC (P49730) Ribonucleoside-diphos... 33 0.12
TC207144 33 0.20
BU547574 33 0.20
BI973861 32 0.26
TC225167 similar to GB|CAA44226.1|20020|NTRPL121A ribosomal prot... 32 0.26
TC213832 similar to UP|AGA1_YEAST (P32323) A-agglutinin attachme... 32 0.26
TC216484 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabin... 32 0.34
TC216836 weakly similar to UP|Q9LPJ0 (Q9LPJ0) F6N18.12, partial ... 32 0.34
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 32 0.44
TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro... 32 0.44
TC211959 homologue to PIR|E86488|E86488 protein T32E20.35 [impor... 31 0.58
>TC220904 homologue to GB|AAS47665.1|44681450|BT011659 At5g03110 {Arabidopsis
thaliana;} , partial (7%)
Length = 708
Score = 116 bits (290), Expect = 1e-26
Identities = 68/126 (53%), Positives = 77/126 (60%), Gaps = 21/126 (16%)
Frame = +3
Query: 6 TKSISSPARTDKFPPPLMRFLRTNAGSRSSRRSRSSPMFVLRNKKTIE-TTQEPSSPKVT 64
TK ISSP RT+KFPPPLMRFLR NA SRS RSR++ LR K T TQEPSSPKVT
Sbjct: 183 TKPISSPGRTEKFPPPLMRFLRNNASSRSRGRSRTTTAMFLRKKNTNNIETQEPSSPKVT 362
Query: 65 CMGQVRAKRSSSK-----SSTTPTHH---WWIK---------KPNPC---RCRLVWPKWA 104
CMGQVR KRS+SK + TPT W+ KP C +C+ VWP W
Sbjct: 363 CMGQVRVKRSASKRVPSAGAGTPTKFRCCSWVPHALFFHRLIKPEVCFPFQCKQVWPNWX 542
Query: 105 FFRRKK 110
F +RKK
Sbjct: 543 FLQRKK 560
>TC231898 similar to UP|Q9T6M2 (Q9T6M2) Cytochrome oxidase subunit III,
partial (7%)
Length = 745
Score = 99.0 bits (245), Expect = 2e-21
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 9/204 (4%)
Frame = -1
Query: 93 PCRCRLVWPKWAFFRRKKPTKP--KQDSVKSESNRNSNFT-----LEDEQRVSVSVESVD 145
P +C+ V P W F +RKK + S K E N F E + RV V+
Sbjct: 694 PXQCKQVXPNWRFLQRKKRDSKVTETSSPKIELNFRGRFNPNYDDSEHKDRVIVNPP--- 524
Query: 146 NAIVSNSNCSTPPKNALLLTRCRSAPYRSSSLASRFWSSPLRNEEETESTSIDDNEESSS 205
A VSN++ STPP+NALLLTRCRSAP R RF + EETE +
Sbjct: 523 -AFVSNTS-STPPRNALLLTRCRSAPGR------RFLN------EETEVVE-------KN 407
Query: 206 QSQKRESVSDKEDSIGERIGLTKDLENV--QELLLKGRVKKEEEDSAVARPVVLTRCKSE 263
+ + S ++++ + ++ K+LE + ++++ +EE DS P+VLTRCKSE
Sbjct: 406 RVNREHSENNRDRKLEAKLRFFKELEESLRERIIMESEKAREESDSV--HPLVLTRCKSE 233
Query: 264 PARVSYRIDPEVNSNLWKKTRLGF 287
PAR + ++DPE+N L KKT LGF
Sbjct: 232 PARTAQKLDPEMN-GLSKKTTLGF 164
>BU090741 homologue to GP|19911575|dbj syringolide-induced protein 14-1-1
{Glycine max}, partial (12%)
Length = 401
Score = 38.5 bits (88), Expect = 0.004
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 55 TQEPSSPKVTCMGQVRAKRSSSK--SSTTPTHHWWIKKPNPCRCRLVWPKWAFFRRKKPT 112
TQEP+SPK++CMGQ++ K+ +K S + PT + P + + + F
Sbjct: 36 TQEPTSPKISCMGQIKHKKGGAKNMSMSMPTP----RDPEVKKHASKFQRMLLFH---AG 194
Query: 113 KPKQDSVKSESNR 125
KPKQ ES R
Sbjct: 195 KPKQSDADVESER 233
>TC229195 similar to UP|Q9SJN3 (Q9SJN3) Expressed protein
(At2g36220/F2H17.17), partial (18%)
Length = 1194
Score = 37.0 bits (84), Expect = 0.011
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +3
Query: 6 TKSISSPARTDKFPPPLMRFLRTNAGSRSSRRSRSSPMFVLRNK----KTIETTQEPSSP 61
+K++ S A P P R+ R ++ +F R+ K + EPSSP
Sbjct: 453 SKNLKSKAAIIGLPKPQKATFADAKSRRNHRPPGNARLFPKRSASVGGKLEGSVVEPSSP 632
Query: 62 KVTCMGQVRAKRSSSKSSTT 81
KV+C+G+VR+KR ++ T
Sbjct: 633 KVSCIGRVRSKRDRNRRLRT 692
>TC209935
Length = 850
Score = 37.0 bits (84), Expect = 0.011
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Frame = +3
Query: 57 EPSSPKVTCMGQVRAKRS------SSKSSTTPT-----HHWWIKKPNPCRC-RLVWPKWA 104
EPSSPKV+CMG+VR+KR SS+ S+ T H KKP R ++
Sbjct: 558 EPSSPKVSCMGRVRSKRDRNRKLRSSRKSSPDTDAKEKHSRSGKKPGFFESFRSIFRSG- 734
Query: 105 FFRRKKPTKPKQDSVKSESNRNSNFTLEDEQRVSVSVESV 144
R+ KP + K D + ++S + + R S S+
Sbjct: 735 --RKGKPDRKKSDPLAADSTHETKSGAVNYSRARHSTSSL 848
Score = 27.3 bits (59), Expect = 8.4
Identities = 27/87 (31%), Positives = 38/87 (43%)
Frame = +3
Query: 110 KPTKPKQDSVKSESNRNSNFTLEDEQRVSVSVESVDNAIVSNSNCSTPPKNALLLTRCRS 169
KP K VK+ N N + + SVSV ++ +V S+ PK + R RS
Sbjct: 438 KPQKTSFVDVKNRRNHNKPSNIRLFPKRSVSVGKSESGLVEPSS----PK-VSCMGRVRS 602
Query: 170 APYRSSSLASRFWSSPLRNEEETESTS 196
R+ L S SSP + +E S S
Sbjct: 603 KRDRNRKLRSSRKSSPDTDAKEKHSRS 683
>TC211379 similar to UP|Q8S901 (Q8S901) Syringolide-induced protein 14-1-1,
partial (16%)
Length = 457
Score = 36.2 bits (82), Expect = 0.018
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Frame = +3
Query: 47 RNKKTIETTQEPSSPKVTCMGQVRAK------RSSSKSSTTPTHHWWIKKPNPCRCRLVW 100
++K TQEP+SPK++CMGQ++ K + ++K+ + PT +K + +
Sbjct: 219 KSKDGCVETQEPTSPKISCMGQIKHKKKKNQIKKAAKTMSMPTE----EKKQASK----F 374
Query: 101 PKWAFFRRKKPTKPKQDSVKSESNRNS 127
+ F KP +P +S+++ S
Sbjct: 375 QRMMSFHSGKPKRPAARKQQSDADLES 455
>TC231428 UP|Q8S901 (Q8S901) Syringolide-induced protein 14-1-1, complete
Length = 1150
Score = 35.8 bits (81), Expect = 0.023
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +1
Query: 55 TQEPSSPKVTCMGQVRAKRSSSKSS 79
+QEP+SPK++CMGQ++ K+ K S
Sbjct: 304 SQEPTSPKISCMGQIKHKKKQIKKS 378
>TC207926 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-like
protein, partial (90%)
Length = 1473
Score = 35.4 bits (80), Expect = 0.031
Identities = 41/144 (28%), Positives = 64/144 (43%), Gaps = 7/144 (4%)
Frame = +2
Query: 74 SSSKSSTTPTHHWWIKKPNPCRCRLVWPKWAFFRRKKPTKPKQDSVKSESNRNSN---FT 130
SSS +STTP KP P R R P P S ++ S R S+ F
Sbjct: 173 SSSTTSTTP-------KP*PSRARSSMPPAP---SSSPASENPASSRTRSRRRSSLWAFA 322
Query: 131 LEDEQRVSVSVESVDN---AIVSNSNCS-TPPKNALLLTRCRSAPYRSSSLASRFWSSPL 186
+R ++S ++++ A+ S+S+ S PP+++ L R R RSSS + ++
Sbjct: 323 PRSSRRWTLSTATLESSPIAMCSSSSASPAPPRSSSALCRVRGPKARSSSRSPPLKAT-- 496
Query: 187 RNEEETESTSIDDNEESSSQSQKR 210
R+ I + ESS +S R
Sbjct: 497 RSPRRATCPCICRSRESSVRSTSR 568
>BE661294 similar to GP|19699067|gb AT5g20250/F5O24_140 {Arabidopsis
thaliana}, partial (17%)
Length = 533
Score = 33.5 bits (75), Expect = 0.12
Identities = 31/101 (30%), Positives = 46/101 (44%), Gaps = 7/101 (6%)
Frame = +2
Query: 4 STTKSISSPARTDK--FPPPLMRFLRTNAGSRSSRRSRSSPMFV-----LRNKKTIETTQ 56
S T S S+PA T F ++F T+ S S+ R S ++ L T ++ +
Sbjct: 59 SPTLSSSAPAPTHSPPFTTHSVQFGTTSRLSASATRRNSLASWIASAGALGMLSTRKSLR 238
Query: 57 EPSSPKVTCMGQVRAKRSSSKSSTTPTHHWWIKKPNPCRCR 97
+ S P+ + Q A+R SS SSTT W + RCR
Sbjct: 239 KESRPEFS-PSQAAARRRSSSSSTTAGSRWAVTTRTQIRCR 358
>TC227815 similar to UP|RIR2_TOBAC (P49730) Ribonucleoside-diphosphate
reductase small chain (Ribonucleotide reductase) (R2
subunit) , complete
Length = 1407
Score = 33.5 bits (75), Expect = 0.12
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +2
Query: 5 TTKSISSPARTDKFPPPLMRFLRTNAGSRSSRRS--RSSPMFVLRNKKTIETTQ-EPSSP 61
T + SSP + PPP+ RT+ G+ R S R P R+ T + SS
Sbjct: 377 TASATSSPTSSPSSPPPMASSSRTSPGASQRRSSSPRPGPSTASRSPSRTSTPRCTASSS 556
Query: 62 KVTCMGQVRAKRSSSKSSTTPTHHWWIKKPN 92
K T R SS S+ +P ++KP+
Sbjct: 557 KPTSRTPTRRTTSSVPSTPSPAS---LRKPS 640
>TC207144
Length = 1174
Score = 32.7 bits (73), Expect = 0.20
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 254 PVVLTRCKSEPARVSYRIDPEVNSNLWKKTRL 285
P VLTRCKSEP R S ++ PE + W +L
Sbjct: 763 PFVLTRCKSEPMRSSAKLAPE--ACFWNNRKL 852
>BU547574
Length = 660
Score = 32.7 bits (73), Expect = 0.20
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -3
Query: 254 PVVLTRCKSEPARVSYRIDPEVNSNLWKKTRL 285
P VLTRCKSEP R S ++ PE + W +L
Sbjct: 358 PFVLTRCKSEPMRSSAKLAPE--ACFWNNRKL 269
>BI973861
Length = 405
Score = 32.3 bits (72), Expect = 0.26
Identities = 19/46 (41%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
Frame = +3
Query: 41 SPMFVLRNKKTIETTQEPSSPKVTCMGQVRAKRSSSKS---STTPT 83
SP N +T + P S K C G++R + SSS S STTPT
Sbjct: 132 SPSKSSSNPRTATASPPPPSAKSCCSGRLRTRTSSSSSMSTSTTPT 269
>TC225167 similar to GB|CAA44226.1|20020|NTRPL121A ribosomal protein L12-1a
{Nicotiana tabacum;} , partial (70%)
Length = 993
Score = 32.3 bits (72), Expect = 0.26
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -2
Query: 3 LSTTKSISSPARTDKFPPPLMRFLRTNAGSRSSRRSRSSP 42
LST +S+P + PP RF R +A RS+RR+ SSP
Sbjct: 494 LSTPSPLSAPG*SAPSPP*SPRFSRCSAPPRSTRRTPSSP 375
>TC213832 similar to UP|AGA1_YEAST (P32323) A-agglutinin attachment subunit
precursor, partial (4%)
Length = 751
Score = 32.3 bits (72), Expect = 0.26
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +3
Query: 39 RSSPMFVLRNKKTIETTQEPSSPKVTCMGQ--VRAKRSSSKS 78
++SP+ + K EP+SPKVTC GQ VR K ++ +S
Sbjct: 198 QASPLLWPKTKSMGSEISEPTSPKVTCAGQMKVRPKTTACRS 323
Score = 28.5 bits (62), Expect = 3.8
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +3
Query: 119 VKSESNRNSNFTLEDEQRVSVSVESVDNAIVSNSNCSTPPKNALLLTRCR 168
V + N+ +N E E+R + E + S PP NALLL RCR
Sbjct: 627 VLQQENQTNNRREETEERGDGNEEE---------SVSVPPPNALLLMRCR 749
>TC216484 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
protein 1 precursor, partial (58%)
Length = 1213
Score = 32.0 bits (71), Expect = 0.34
Identities = 28/101 (27%), Positives = 41/101 (39%)
Frame = +1
Query: 28 TNAGSRSSRRSRSSPMFVLRNKKTIETTQEPSSPKVTCMGQVRAKRSSSKSSTTPTHHWW 87
+++G S RR SSP R + PSSP T ++S S T+P
Sbjct: 52 SSSGHCSRRRCSSSPPSPTRTTSPASSQSTPSSPPST---------TTSPSPTSPPKS-T 201
Query: 88 IKKPNPCRCRLVWPKWAFFRRKKPTKPKQDSVKSESNRNSN 128
K P+P P F R P+ P + S S S+ ++
Sbjct: 202 AKPPSPSAPSTTPPCRTFSRSTPPSTPSRTSSPSTSSSTTS 324
Score = 28.1 bits (61), Expect = 4.9
Identities = 32/124 (25%), Positives = 41/124 (32%)
Frame = +1
Query: 4 STTKSISSPARTDKFPPPLMRFLRTNAGSRSSRRSRSSPMFVLRNKKTIETTQEPSSPKV 63
S+ + SSP T P P T S S + P T SSP
Sbjct: 127 SSQSTPSSPPSTTTSPSPTSPPKSTAKPPSPSAPSTTPPCRTFSRSTPPSTPSRTSSPS- 303
Query: 64 TCMGQVRAKRSSSKSSTTPTHHWWIKKPNPCRCRLVWPKWAFFRRKKPTKPKQDSVKSES 123
T A RSS++S T P P+P +C KP P D S +
Sbjct: 304 TSSSTTSAPRSSTRSPTAP--------PSPPQC------------TKPPAPPPDPPASST 423
Query: 124 NRNS 127
+ S
Sbjct: 424 SPTS 435
>TC216836 weakly similar to UP|Q9LPJ0 (Q9LPJ0) F6N18.12, partial (46%)
Length = 1272
Score = 32.0 bits (71), Expect = 0.34
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +2
Query: 72 KRSSSKSSTTPTHHWWIKK---PNPCRCRLVWPKWAFFR 107
+R+ S ++TPT WW+ + PN + WP+W+F R
Sbjct: 761 RRTRSPPTSTPTA-WWLPRRRVPNAEGAQSAWPRWSFCR 874
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 31.6 bits (70), Expect = 0.44
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Frame = -3
Query: 114 PKQDSVKSESNRNSNFTLEDEQRVSVSVESVD---------NAIVSNSNCSTPPKNALLL 164
PK S S+ +S+ + + S S+ S ++ S+S+ S+PP A
Sbjct: 573 PKSSSSPCSSSSSSSSSSSSSESSSESLSSSSGSPPRWTSPSSSSSSSSSSSPPSGASSS 394
Query: 165 TRCRSAPYRSSSLASRFWSSPLRNEEETESTSIDDNEESSSQSQK 209
+ S+P SSS +S SS + +TS D+ SSS S K
Sbjct: 393 SSSLSSPSSSSSSSSSSSSS-----SASSTTSSTDSYSSSSSSTK 274
Score = 28.9 bits (63), Expect = 2.9
Identities = 28/119 (23%), Positives = 49/119 (40%), Gaps = 3/119 (2%)
Frame = -3
Query: 104 AFFRRKKPTKPKQDSVKSESNRN---SNFTLEDEQRVSVSVESVDNAIVSNSNCSTPPKN 160
AF + T S S +++ S+ + + R+ SV ++ S+S+ S+ +
Sbjct: 696 AFSQSSSSTSSSSSSPFSSGSKSLDASSSSAVSKGRIRYSVPKSSSSPCSSSSSSSSSSS 517
Query: 161 ALLLTRCRSAPYRSSSLASRFWSSPLRNEEETESTSIDDNEESSSQSQKRESVSDKEDS 219
+ + S SSS + W+SP + + S+S SSS S S S S
Sbjct: 516 S---SESSSESLSSSSGSPPRWTSPSSSSSSSSSSSPPSGASSSSSSLSSPSSSSSSSS 349
>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
partial (8%)
Length = 581
Score = 31.6 bits (70), Expect = 0.44
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Frame = -3
Query: 3 LSTTKSISSPARTDKFPPPLMRFLRTNAGSRSSRRSRSSPMFVLRNKKTIETTQEPSSPK 62
LS++ S SS + + PPPL S SS S SSP + ++ PSSP
Sbjct: 465 LSSSSSSSSSSSSSLSPPPL--------ASGSSSESASSPPSSPEKSSSSSSSSSPSSPS 310
Query: 63 VTCMGQVRAKRSSSKSSTT-----------PTHHW 86
T SSS SS + P H W
Sbjct: 309 FT-------SSSSSSSSVSLASLFSSEVCFPLHGW 226
Score = 28.1 bits (61), Expect = 4.9
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 27/141 (19%)
Frame = -3
Query: 150 SNSNCSTPPKNALLLTRCRSAPYRSSSL---------ASRFWSSPLRNEEETESTSIDDN 200
S+S+ S+ P ++ L + S+ SSSL +S SSP + E++ S+S +
Sbjct: 504 SSSSSSSSPSSSSLSSSSSSSSSSSSSLSPPPLASGSSSESASSPPSSPEKSSSSSSSSS 325
Query: 201 EESSSQSQKRESVSD------------------KEDSIGERIGLTKDLENVQELLLKGRV 242
S S + S S + ++ IG TK L +V+ + R
Sbjct: 324 PSSPSFTSSSSSSSSVSLASLFSSEVCFPLHGWSKGNLPSTIGDTKLLASVRRDPVTTR- 148
Query: 243 KKEEEDSAVARPVVLTRCKSE 263
K+ D AVAR V T+ ++
Sbjct: 147 -KQARDLAVARRVSSTKASTK 88
>TC211959 homologue to PIR|E86488|E86488 protein T32E20.35 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(19%)
Length = 894
Score = 31.2 bits (69), Expect = 0.58
Identities = 18/53 (33%), Positives = 29/53 (53%)
Frame = +3
Query: 32 SRSSRRSRSSPMFVLRNKKTIETTQEPSSPKVTCMGQVRAKRSSSKSSTTPTH 84
SR S + + P F + + +P SP+++CMGQV KR++ S P+H
Sbjct: 114 SRPSIKEVTLPRF---RDPSASSGNDPLSPRISCMGQV--KRNNKISGIPPSH 257
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.310 0.124 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,515,211
Number of Sequences: 63676
Number of extensions: 224578
Number of successful extensions: 1585
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 1546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of query: 294
length of database: 12,639,632
effective HSP length: 97
effective length of query: 197
effective length of database: 6,463,060
effective search space: 1273222820
effective search space used: 1273222820
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC124963.14