TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124963.11 - phase: 0 /pseudo
         (168 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC221234 similar to UP|Q6V9S8 (Q6V9S8) Glycuronosyltransferase-l...    91  3e-19
BI969441                                                               42  1e-06
BI969552                                                               43  6e-06
TC207697 similar to UP|O81698 (O81698) Proline-rich protein, par...    28  2.7
TC204541 homologue to UP|Q93YH7 (Q93YH7) Selenium binding protei...    27  6.0

>TC221234 similar to UP|Q6V9S8 (Q6V9S8) Glycuronosyltransferase-like protein,
           partial (45%)
          Length = 738

 Score = 90.9 bits (224), Expect = 3e-19
 Identities = 56/91 (61%), Positives = 61/91 (66%)
 Frame = +1

Query: 70  HCFGLLSKRKPNQLNCQRY*GKLVSCIDMLFSVKSSWT*KLN*IIKEI*LLDTLNIIDLV 129
           H FG   K KP   NCQRY*GKL SCI M FS K S  *KLN I + I  L TL+    +
Sbjct: 49  HAFG---KLKPIPKNCQRY*GKLASCIGMWFSRKISRN*KLNSITRGILRLSTLSTTGSM 219

Query: 130 GLFTLLAFLMFMIFNSSNSLEILRSLGHGQR 160
            L+TLLAF MFMI NSS SLEILRSL HGQ+
Sbjct: 220 ALYTLLAFPMFMISNSSISLEILRSLEHGQQ 312


>BI969441 
          Length = 504

 Score = 41.6 bits (96), Expect(2) = 1e-06
 Identities = 21/32 (65%), Positives = 26/32 (80%)
 Frame = +3

Query: 129 VGLFTLLAFLMFMIFNSSNSLEILRSLGHGQR 160
           + L+T+LAF MFMI NSS SL+ILRSL H Q+
Sbjct: 165 MALYTVLAFPMFMISNSSISLQILRSLEHXQQ 260



 Score = 26.6 bits (57), Expect(2) = 1e-06
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 77 KRKPNQLNCQRY*GKL 92
          K KP   NCQRY*GKL
Sbjct: 10 KLKPLPKNCQRY*GKL 57


>BI969552 
          Length = 522

 Score = 42.7 bits (99), Expect(2) = 6e-06
 Identities = 23/41 (56%), Positives = 29/41 (70%)
 Frame = +1

Query: 120 LDTLNIIDLVGLFTLLAFLMFMIFNSSNSLEILRSLGHGQR 160
           L TL+    + L+T+LAF M MI NSS SL+ILRSL H Q+
Sbjct: 175 LSTLSTTGSMALYTVLAFPMIMISNSSISLQILRSLEHXQQ 297



 Score = 23.1 bits (48), Expect(2) = 6e-06
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 77 KRKPNQLNCQRY*GKL 92
          K  P   NC+RY*GKL
Sbjct: 42 KLTPIPKNCERY*GKL 89


>TC207697 similar to UP|O81698 (O81698) Proline-rich protein, partial (91%)
          Length = 1487

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
 Frame = +2

Query: 44  HQQAQNYLITMFF*EGWQIL*SLLINHC----FGL---LSKRKPNQLNCQ 86
           H   Q YL  +F    WQ+L     NHC    F L   L   + +QL+CQ
Sbjct: 611 HHNFQTYLCLLFIKLKWQLLPVSYSNHCRHRGFHLCNHLCHHRSDQLHCQ 760


>TC204541 homologue to UP|Q93YH7 (Q93YH7) Selenium binding protein (Fragment),
            complete
          Length = 1732

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 17/45 (37%), Positives = 21/45 (45%), Gaps = 10/45 (22%)
 Frame = +1

Query: 72   FGLLSKRKPNQLN----------CQRY*GKLVSCIDMLFSVKSSW 106
            +GLL +RKP   N          C R+ GK V C     SV+S W
Sbjct: 1144 WGLLPERKPYSSNNRRW*YLAI*CSRHPGK*VECWPSDDSVESGW 1278


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.362    0.162    0.552 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,283,664
Number of Sequences: 63676
Number of extensions: 98402
Number of successful extensions: 1333
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of query: 168
length of database: 12,639,632
effective HSP length: 90
effective length of query: 78
effective length of database: 6,908,792
effective search space: 538885776
effective search space used: 538885776
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 55 (25.8 bits)