BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124963.10 - phase: 0 /pseudo
(214 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 37 1e-05
BE554941 41 4e-04
BM891241 40 0.001
TC231922 39 0.001
BM891637 38 0.003
BU090318 weakly similar to GP|9743345|gb| F21J9.30 {Arabidopsis ... 38 0.003
TC222557 33 0.13
BI427218 32 0.28
TC229841 UP|Q76ND2 (Q76ND2) ORF41c, partial (34%) 31 0.37
AW348884 similar to PIR|JQ1070|JQ1 phenylalanine ammonia-lyase (... 31 0.48
TC223682 homologue to UP|SYE_ARATH (Q9FEA2) Glutamyl-tRNA synthe... 30 0.82
BM528880 similar to GP|10177621|dbj phytoene dehydrogenase-like ... 30 1.1
TC229880 similar to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucros... 29 1.4
BI970631 28 2.4
BI317637 28 2.4
TC222512 weakly similar to UP|Q41518 (Q41518) Single-stranded nu... 28 2.4
TC225454 similar to UP|Q84PB7 (Q84PB7) Inositol phosphatase-like... 28 4.1
TC205310 homologue to UP|HS2M_SOYBN (Q39818) Heat shock 22 kDa p... 28 4.1
TC205309 UP|HS2M_SOYBN (Q39818) Heat shock 22 kDa protein, mitoc... 28 4.1
CO979023 28 4.1
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 36.6 bits (83), Expect(2) = 1e-05
Identities = 25/78 (32%), Positives = 39/78 (49%), Gaps = 8/78 (10%)
Frame = +2
Query: 129 WFRVLAARNG----VEGGNLCSGGRDGSAWWRNIAA---LPSEGWFHNNVSRSLGDGSSV 181
W +VL ++ G +E G+ SG +D SAWW+++ L +G G +
Sbjct: 230 WAKVLQSKYGGWRALEEGS--SGSKD-SAWWKDLIKTQQLQRNIPLKRETIWKVGGGDRI 400
Query: 182 LFWTDVWVG-ELSLHDRF 198
FW D+W +LSL D+F
Sbjct: 401 KFWEDLWTNTDLSLRDKF 454
Score = 28.9 bits (63), Expect(2) = 1e-05
Identities = 17/45 (37%), Positives = 30/45 (65%), Gaps = 1/45 (2%)
Frame = +1
Query: 77 WGRGERRPQENYLG*LEFC-LSESGGWRFEGKENKRI*FSIIREV 120
WG G+ QEN +G*LE C L+ES W + + ++ + ++I+R++
Sbjct: 73 WGSGQ---QENCMG*LENCLLAESKRWSWY-QRSQNLQYNIVRQM 195
>BE554941
Length = 383
Score = 41.2 bits (95), Expect = 4e-04
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +1
Query: 122 LVDRDSLWFRVLAARNG-VEGGNLCSGGRDGSAWWRNIAALPS----EGWFHNNVSRSLG 176
LV+ ++W +L G ++ N S R S WWR+I + + GW + R +G
Sbjct: 67 LVETKAIWAPILKFHYGSLDLSNTGSASRT-SQWWRDILRIGNCQYQPGWLTSTFCRKIG 243
Query: 177 DGSSVLFWTDVWVGELSLHDRFSRLYELSLLK 208
D LFW + E L +RL L++ K
Sbjct: 244 DRKDTLFWRHRCLNETPLMQSHARLXSLAMDK 339
>BM891241
Length = 407
Score = 39.7 bits (91), Expect = 0.001
Identities = 18/55 (32%), Positives = 30/55 (53%), Gaps = 4/55 (7%)
Frame = -3
Query: 152 SAWWRNIAAL---PSEGWFHNNVSRSLGDGSSVLFWTDVWVGE-LSLHDRFSRLY 202
S WWR++ FH +S +G G + FWTD W+GE +L ++++L+
Sbjct: 174 SYWWRDLRKFYHQSDHSIFHQYMSWKVGCGDKINFWTDKWLGEDYTLEQKYNQLF 10
>TC231922
Length = 803
Score = 39.3 bits (90), Expect = 0.001
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Frame = -3
Query: 152 SAWWRNIAALPSEGWFHN---NVSRSLGDGSSVLFWTDVWVGE-LSLHDRFSRLYELS 205
S WW+++ L ++ FH+ N+ +G G + FW D W+ E +L ++++LY +S
Sbjct: 777 SHWWKDLRRLYNQPDFHSIHQNMVWRVGCGDKIKFWQDSWLSEGCNLQQKYNQLYTIS 604
>BM891637
Length = 427
Score = 38.1 bits (87), Expect = 0.003
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Frame = -1
Query: 128 LWFRVLAAR-NGVEGGNLCSGGRDGSAWWRNIAALPSEGWF---HNNVSRSLGDGSSVLF 183
LW R+L ++ G G + S WW ++ A+ N +G G +LF
Sbjct: 280 LWNRILISKYKGWRGLDQGPQKYYFSPWWADLRAINQHQSMIAASNQFCWKVGRGDQILF 101
Query: 184 WTDVWVGE-LSLHDRFSRLYELS 205
W D WV + L D+F LY LS
Sbjct: 100 WEDSWVDDGTPLKDQFPELYRLS 32
>BU090318 weakly similar to GP|9743345|gb| F21J9.30 {Arabidopsis thaliana},
partial (1%)
Length = 422
Score = 38.1 bits (87), Expect = 0.003
Identities = 17/41 (41%), Positives = 26/41 (62%)
Frame = +3
Query: 149 RDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWV 189
+ G+ +W+ I E H+N++R +G+G SV FW DVWV
Sbjct: 207 KTGTNFWQGIVHC-WEKITHDNIARKIGNGRSVHFWKDVWV 326
>TC222557
Length = 1002
Score = 32.7 bits (73), Expect = 0.13
Identities = 16/49 (32%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Frame = +3
Query: 165 GWFHNNVSRSLGDGSSVLFWTDVWVGELS-LHDRFSRLYELSLLKGKTI 212
G F + + +G G + FW D W+ E L ++ RLY +S + K I
Sbjct: 45 GLFQSAIDWKVGCGDKIRFWEDCWLMEQEPLRAKYPRLYNISCQQQKLI 191
>BI427218
Length = 421
Score = 31.6 bits (70), Expect = 0.28
Identities = 19/71 (26%), Positives = 32/71 (44%), Gaps = 6/71 (8%)
Frame = +1
Query: 124 DRDSLWFRVLAARNGVEGGNL--CSGGRDGSAWWRNIAALPSEG----WFHNNVSRSLGD 177
++ LW R+L ++ G + +L + G SAWW++I + G F + +
Sbjct: 28 NKGELWARILDSKYG-DWRHLEEPTRGNRASAWWKDINIIDPSGADGSLFDKGIKWKVAC 204
Query: 178 GSSVLFWTDVW 188
G FW D W
Sbjct: 205 GEKTKFWEDGW 237
>TC229841 UP|Q76ND2 (Q76ND2) ORF41c, partial (34%)
Length = 829
Score = 31.2 bits (69), Expect = 0.37
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 41 ISWFTNWREC*SV---GVLGRSVRYCLLY*IYFKFFFFFWG 78
+SWF R S+ + G SV+Y L +F FFF FWG
Sbjct: 416 LSWFNRLRSSFSLRNSSLKGISVKYRQL*LFFFFFFFIFWG 538
>AW348884 similar to PIR|JQ1070|JQ1 phenylalanine ammonia-lyase (EC
4.3.1.5) - soybean (fragment), partial (29%)
Length = 455
Score = 30.8 bits (68), Expect = 0.48
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 34 GWFYPLYISWFTNWREC*SVGVLGRSV 60
GWFY +++ WF + EC + +G S+
Sbjct: 83 GWFYSVFVKWFHSAHECVFI*AVGLSI 3
>TC223682 homologue to UP|SYE_ARATH (Q9FEA2) Glutamyl-tRNA synthetase
(Glutamate--tRNA ligase) (GluRS) , partial (19%)
Length = 461
Score = 30.0 bits (66), Expect = 0.82
Identities = 19/55 (34%), Positives = 25/55 (44%)
Frame = -2
Query: 100 GGWRFEGKENKRI*FSIIREVVLVDRDSLWFRVLAARNGVEGGNLCSGGRDGSAW 154
GG+R+E + N+R VV+V R+ RNGV G C G G W
Sbjct: 175 GGFRWEKERNER------ERVVVVRREQ------RLRNGVVGRRRCEGCESGGKW 47
>BM528880 similar to GP|10177621|dbj phytoene dehydrogenase-like {Arabidopsis
thaliana}, partial (6%)
Length = 428
Score = 29.6 bits (65), Expect = 1.1
Identities = 14/37 (37%), Positives = 22/37 (58%)
Frame = +2
Query: 28 NGVELQGWFYPLYISWFTNWREC*SVGVLGRSVRYCL 64
NG+ +QG++ Y SW T +C* V V+ + +CL
Sbjct: 83 NGLNIQGYW*CCY*SWSTCCNQC*GVSVVD*KL*HCL 193
>TC229880 similar to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucrose-responsive
element binding factor, partial (35%)
Length = 583
Score = 29.3 bits (64), Expect = 1.4
Identities = 14/36 (38%), Positives = 17/36 (46%)
Frame = -3
Query: 161 LPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHD 196
LP+ W VS S G + W D W+ SLHD
Sbjct: 329 LPNRAWARIMVSSSSGVKARCSTWGDSWLHHRSLHD 222
>BI970631
Length = 775
Score = 28.5 bits (62), Expect = 2.4
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Frame = +1
Query: 152 SAWWRNIAALPSEGWF---HNNVSRSLGDGSSVLFWTDVW--VGELSLHDRFSRLY 202
S WWR++ + F H ++ G G + FW D W G + FS LY
Sbjct: 493 SHWWRDLRKIYQHNDFKIIHXXMAWKAGCGDKIRFWKDNWXXXGLQLXTEIFSALY 660
>BI317637
Length = 315
Score = 28.5 bits (62), Expect = 2.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 178 GSSVLFWTDVWVGELSLHDRFSRLY 202
G+ V W DVW G L +++SRL+
Sbjct: 217 GNKVKLWYDVWAGIQHLVNKYSRLF 143
>TC222512 weakly similar to UP|Q41518 (Q41518) Single-stranded nucleic acid
binding protein, partial (24%)
Length = 616
Score = 28.5 bits (62), Expect = 2.4
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = -3
Query: 68 IYFKFFFFFWGRGERR 83
I F FFFFFWG G+ R
Sbjct: 302 IAFPFFFFFWGGGKGR 255
>TC225454 similar to UP|Q84PB7 (Q84PB7) Inositol phosphatase-like protein,
partial (76%)
Length = 1356
Score = 27.7 bits (60), Expect = 4.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 24 VRSGNGVELQGWFYPLYISWFTNW 47
+R+ +G L WFY LY+ + +W
Sbjct: 1099 IRNQSGALLSSWFYLLYLVYLLSW 1170
>TC205310 homologue to UP|HS2M_SOYBN (Q39818) Heat shock 22 kDa protein,
mitochondrial precursor, partial (41%)
Length = 503
Score = 27.7 bits (60), Expect = 4.1
Identities = 19/51 (37%), Positives = 22/51 (42%)
Frame = +3
Query: 123 VDRDSLWFRVLAARNGVEGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSR 173
V RD W R A+R G EG CS G AW R G H++ R
Sbjct: 330 VARDRSW-RWSASRMGREGDRGCSASARGHAWARQGRREDLRGAEHSHYQR 479
>TC205309 UP|HS2M_SOYBN (Q39818) Heat shock 22 kDa protein, mitochondrial
precursor, complete
Length = 971
Score = 27.7 bits (60), Expect = 4.1
Identities = 19/51 (37%), Positives = 22/51 (42%)
Frame = +3
Query: 123 VDRDSLWFRVLAARNGVEGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSR 173
V RD W R A+R G EG CS G AW R G H++ R
Sbjct: 384 VARDRSW-RWSASRMGREGDRGCSASARGHAWARQGRREDLRGAEHSHYQR 533
>CO979023
Length = 760
Score = 27.7 bits (60), Expect = 4.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 127 SLWFRVLAARNGVEGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSL 175
SL F +L R+ C+ G S W++N + + WF ++ S SL
Sbjct: 408 SLSFCILVMRSHTSSSRGCTFGNTCSWWFKNFWST-NNSWFQSSTSSSL 551
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.339 0.152 0.545
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,572,357
Number of Sequences: 63676
Number of extensions: 229108
Number of successful extensions: 2635
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 2368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2525
length of query: 214
length of database: 12,639,632
effective HSP length: 93
effective length of query: 121
effective length of database: 6,717,764
effective search space: 812849444
effective search space used: 812849444
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC124963.10