BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124953.9 - phase: 0
(95 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BE608415 102 4e-23
TC226059 similar to GB|AAG40073.2|13265596|AF324722 AT4g15610 {A... 28 0.57
TC226058 similar to GB|AAG40073.2|13265596|AF324722 AT4g15610 {A... 28 0.75
BG790196 28 0.75
BQ785265 28 0.98
TC222159 similar to UP|Q9M1I2 (Q9M1I2) Oligopeptide transporter-... 27 1.3
TC211143 weakly similar to UP|Q6Z6H7 (Q6Z6H7) Armadillo/beta-cat... 27 2.2
TC206916 similar to UP|Q945M8 (Q945M8) AT4g31460/F3L17_30, parti... 27 2.2
TC211136 UP|Q84VI3 (Q84VI3) Envelope-like protein (Fragment), co... 27 2.2
TC206915 similar to UP|Q945M8 (Q945M8) AT4g31460/F3L17_30, parti... 27 2.2
TC211199 similar to UP|Q6Z1Z7 (Q6Z1Z7) PWWP domain protein-like,... 26 2.8
BQ785413 26 2.8
TC204682 homologue to UP|Q9SWB5 (Q9SWB5) Seed maturation protein... 26 2.8
TC234597 weakly similar to UP|Q7ZRD4 (Q7ZRD4) Envelope glycoprot... 26 2.8
BE807399 26 3.7
BE800661 26 3.7
TC226155 26 3.7
CA936257 26 3.7
CO979226 26 3.7
TC203635 similar to PIR|T46225|T46225 alpha NAC-like protein - A... 26 3.7
>BE608415
Length = 422
Score = 102 bits (253), Expect = 4e-23
Identities = 51/63 (80%), Positives = 54/63 (84%)
Frame = +2
Query: 1 MAEGSNTPVLLPDLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVRWYFCKTSL 60
MAEG L PDLLKNTPSNIARL+DV+E SKARQKYLAHT+SSSDGGDVRWYFCK SL
Sbjct: 215 MAEGEE---LRPDLLKNTPSNIARLEDVIEHSKARQKYLAHTSSSSDGGDVRWYFCKISL 385
Query: 61 AHN 63
A N
Sbjct: 386 APN 394
>TC226059 similar to GB|AAG40073.2|13265596|AF324722 AT4g15610 {Arabidopsis
thaliana;} , partial (38%)
Length = 943
Score = 28.5 bits (62), Expect = 0.57
Identities = 18/53 (33%), Positives = 25/53 (46%), Gaps = 10/53 (18%)
Frame = +2
Query: 49 GDVRW-----YFCKTSLAHNGMYYVLSSICSFC-CI----NLILYYFTTLLVC 91
GD W Y C T+ A +L+S+C FC CI L +Y T + +C
Sbjct: 152 GDRHW*SNRGYSCSTACAMASQVQILTSLCVFCSCIVRYWPLQYHYNTCITLC 310
>TC226058 similar to GB|AAG40073.2|13265596|AF324722 AT4g15610 {Arabidopsis
thaliana;} , partial (47%)
Length = 1014
Score = 28.1 bits (61), Expect = 0.75
Identities = 16/45 (35%), Positives = 23/45 (50%), Gaps = 5/45 (11%)
Frame = +3
Query: 52 RWYFCKTSLAHNGMYYVLSSICSFC-CI----NLILYYFTTLLVC 91
R Y C T+ A +L+S+C FC CI L +Y T + +C
Sbjct: 324 RGYSCSTACAMASQVQILTSLCLFCSCIVRYWPLQYHYNTCITLC 458
>BG790196
Length = 304
Score = 28.1 bits (61), Expect = 0.75
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 55 FCKTSLAHNGMYYVLSSICSFCC 77
F ++ L HN +Y SSIC+FCC
Sbjct: 168 FARS*LQHN-LYSASSSICNFCC 233
>BQ785265
Length = 426
Score = 27.7 bits (60), Expect = 0.98
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 13 DLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGD--VRWYFCKTSL 60
D KN + I+ ++EQ+K ++ + +T++ SDG D VR C + L
Sbjct: 57 DAGKNAKNEISTDGQIIEQTKEQKPQVDNTSTQSDGKDEPVRSNGCSSQL 206
>TC222159 similar to UP|Q9M1I2 (Q9M1I2) Oligopeptide transporter-like
protein, partial (5%)
Length = 776
Score = 27.3 bits (59), Expect = 1.3
Identities = 15/47 (31%), Positives = 20/47 (41%)
Frame = +2
Query: 45 SSDGGDVRWYFCKTSLAHNGMYYVLSSICSFCCINLILYYFTTLLVC 91
+S GG+ W + AH YY L CI LI Y + + C
Sbjct: 425 TSVGGEESWLATNINRAHLNYYYAL-----LTCIGLINYLYFLAISC 550
>TC211143 weakly similar to UP|Q6Z6H7 (Q6Z6H7) Armadillo/beta-catenin repeat
protein-like, partial (48%)
Length = 1036
Score = 26.6 bits (57), Expect = 2.2
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +2
Query: 72 ICSFCCINLILYYFTT 87
IC+ C +NLILY+F++
Sbjct: 962 ICTHCRLNLILYFFSS 1009
>TC206916 similar to UP|Q945M8 (Q945M8) AT4g31460/F3L17_30, partial (70%)
Length = 963
Score = 26.6 bits (57), Expect = 2.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 54 YFCKTSLAHNGMYYVLSSICSFCCIN 79
YF + H+ + + S C FCCIN
Sbjct: 699 YFLC*TYDHHRYHSIFDSSCKFCCIN 776
>TC211136 UP|Q84VI3 (Q84VI3) Envelope-like protein (Fragment), complete
Length = 2043
Score = 26.6 bits (57), Expect = 2.2
Identities = 11/31 (35%), Positives = 14/31 (44%)
Frame = -1
Query: 64 GMYYVLSSICSFCCINLILYYFTTLLVCIPF 94
G + ++ C FCCI L L F C F
Sbjct: 2037 GGFRIIIGFCLFCCIFLFLSSFFFFFSCFSF 1945
>TC206915 similar to UP|Q945M8 (Q945M8) AT4g31460/F3L17_30, partial (91%)
Length = 1186
Score = 26.6 bits (57), Expect = 2.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 54 YFCKTSLAHNGMYYVLSSICSFCCIN 79
YF + H+ + + S C FCCIN
Sbjct: 961 YFLC*TYDHHRYHSIFDSSCKFCCIN 1038
>TC211199 similar to UP|Q6Z1Z7 (Q6Z1Z7) PWWP domain protein-like, partial
(8%)
Length = 914
Score = 26.2 bits (56), Expect = 2.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 39 LAHTNSSSDGGDVRWYFCKTSLAHNGMYYVLSSICSFCC 77
LAH +G ++ W F + SL ++ V S CS C
Sbjct: 518 LAHEERFEEGEEIAWVF*QGSLQYSRFAVVNGSGCSCGC 634
>BQ785413
Length = 376
Score = 26.2 bits (56), Expect = 2.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 63 NGMYYVLSSICSFCCINLILYYFTT 87
N M ++LS +CS C NL++Y F T
Sbjct: 186 NAMLHILS-LCSICERNLVMY*FDT 257
>TC204682 homologue to UP|Q9SWB5 (Q9SWB5) Seed maturation protein PM37,
partial (27%)
Length = 447
Score = 26.2 bits (56), Expect = 2.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 50 DVRWYFCKTSLAHNGMYYVLSSICSFCCINLILYYFTTLLV 90
D++W + H+ L SI S C INL L T L+
Sbjct: 385 DIKWIMATATTTHS----FLKSIFSICIINLALLRVTQNLI 275
>TC234597 weakly similar to UP|Q7ZRD4 (Q7ZRD4) Envelope glycoprotein
(Fragment), partial (5%)
Length = 822
Score = 26.2 bits (56), Expect = 2.8
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Frame = +3
Query: 1 MAEGSNTPVLL--PDLLKNTPSN-----IARLKDVVEQSKARQKYLAHTNSSSDGGDVRW 53
+ E S +P P ++PSN I +DVV +K L D GDV W
Sbjct: 351 LTESSTSPTTSTSPSSSGDSPSNFSQGQIVMRRDVVNIKGEEEKPLIELELEEDNGDVSW 530
Query: 54 -YFCKTSLAHNGMY 66
+TS++ + Y
Sbjct: 531 ETLLETSISFSHAY 572
>BE807399
Length = 292
Score = 25.8 bits (55), Expect = 3.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 52 RWYFCKTSLAHNGMYYVLSSICSFC 76
R Y C T+ A +L+S+CS C
Sbjct: 160 RGYACSTACAMASQVQILTSLCSVC 234
>BE800661
Length = 361
Score = 25.8 bits (55), Expect = 3.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 63 NGMYYVLSSICSFCCINLILYY 84
N M YVL CSF C+N +L +
Sbjct: 227 NMMGYVLILSCSFSCLNRLLIF 162
>TC226155
Length = 918
Score = 25.8 bits (55), Expect = 3.7
Identities = 14/37 (37%), Positives = 20/37 (53%)
Frame = -2
Query: 24 RLKDVVEQSKARQKYLAHTNSSSDGGDVRWYFCKTSL 60
R + V +K + KY +SSS+ + WYF TSL
Sbjct: 761 RYEKTVITNKEKHKYFQDIHSSSNR--ITWYFVLTSL 657
>CA936257
Length = 455
Score = 25.8 bits (55), Expect = 3.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 60 LAHNGMYYVLSSICSFCCINLILYYFTTLLVCIPF 94
LA+N + +L CSFC + F LL+CI F
Sbjct: 166 LAYN--FIILRYFCSFCL*AVCYVRFMLLLLCIIF 68
>CO979226
Length = 737
Score = 25.8 bits (55), Expect = 3.7
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 51 VRWYFCKTSLAHNGMYYVLSSICSF--CCINLILYYFTT 87
V W FC +L + + ++S+ C + CC +++ Y +
Sbjct: 98 VPWIFCLLALHSSKLKMIVSTFCLWFNCCTDILCAYINS 214
>TC203635 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (71%)
Length = 1007
Score = 25.8 bits (55), Expect = 3.7
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +3
Query: 61 AHNGMYYVLSSICSFCCINLILYYFTTLLVCIPF 94
+H+G +Y++ +CS C ++++ L +PF
Sbjct: 702 SHHGTHYLIGGLCSIC-----MFFWE*YLELVPF 788
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,809,827
Number of Sequences: 63676
Number of extensions: 97279
Number of successful extensions: 933
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of query: 95
length of database: 12,639,632
effective HSP length: 71
effective length of query: 24
effective length of database: 8,118,636
effective search space: 194847264
effective search space used: 194847264
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)
Medicago: description of AC124953.9