BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124953.18 + phase: 0
(391 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC228166 similar to GB|AAM16172.1|20334832|AY094016 At2g39720/T5... 277 7e-75
TC228165 similar to GB|AAP68298.1|31711884|BT008859 At3g46620 {A... 187 7e-48
CO978602 139 2e-33
TC229810 similar to GB|AAM16172.1|20334832|AY094016 At2g39720/T5... 139 2e-33
TC215462 similar to UP|O22197 (O22197) Expressed protein (At2g40... 136 1e-32
TC215460 similar to UP|O22197 (O22197) Expressed protein (At2g40... 134 9e-32
TC232119 similar to GB|AAP68298.1|31711884|BT008859 At3g46620 {A... 134 9e-32
TC215461 weakly similar to UP|Q6Z303 (Q6Z303) Zinc finger-like, ... 127 7e-30
TC227652 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partia... 127 9e-30
TC232621 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partia... 123 1e-28
TC227651 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partia... 117 7e-27
AW349923 weakly similar to PIR|T00747|T007 RING-H2 finger protei... 108 3e-24
TC229809 similar to GB|AAP68298.1|31711884|BT008859 At3g46620 {A... 103 2e-22
TC211191 similar to GB|AAM16172.1|20334832|AY094016 At2g39720/T5... 101 7e-22
BU549221 88 8e-18
TC217075 similar to UP|Q9SPL2 (Q9SPL2) COP1-interacting protein ... 86 3e-17
TC230070 weakly similar to GB|AAB68216.1|1244771|SCU43703 Ypl146... 80 1e-15
AI460473 similar to GP|15450687|gb| AT5g59550/f2o15_210 {Arabido... 77 1e-14
TC207072 similar to UP|Q8RXD3 (Q8RXD3) ABI3-interacting protein ... 75 4e-14
TC217076 similar to UP|Q9SPL2 (Q9SPL2) COP1-interacting protein ... 75 5e-14
>TC228166 similar to GB|AAM16172.1|20334832|AY094016 At2g39720/T5I7.2
{Arabidopsis thaliana;} , partial (36%)
Length = 875
Score = 277 bits (708), Expect = 7e-75
Identities = 138/295 (46%), Positives = 191/295 (63%)
Frame = +2
Query: 2 SSHWCYRCNKFVRVWRLGMPICPDCDSGFLEDVEQSTHSANTVGGRRMRFPMAAAMYMIG 61
+S+WCY C +FV + CP C SGF+E++ + + R FP +
Sbjct: 56 ASYWCYSCTRFVHLSVQSTIACPHCQSGFVEEIRAGAGAEASPRHRLSPFPDDPLLL--- 226
Query: 62 HRNNNYNQNTFRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSREREENNEFELFYEDG 121
+ FRR RR G+ SPFNP+I++RG G S + + + + FELFY+DG
Sbjct: 227 ------RRQGFRRRRREA--SGNRSPFNPVIVLRGPGDDS--AAADHDGASTFELFYDDG 376
Query: 122 AGSGLRALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLPALKSAVELLPTIE 181
G+GLR LPP MSE +LGSGF+R++EQ + +E N G ++ P K+A+E +PT+E
Sbjct: 377 DGTGLRPLPPTMSEFLLGSGFDRLLEQFAQMEMNGFGRP----ENPPTSKAAIESMPTVE 544
Query: 182 INESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNSCPVCRHELPCES 241
I E+H+ ++HCAVCKE FEL ARE+PCKHIYH+ECILPWL+++NSCPVCRHELP +
Sbjct: 545 IGETHVETDAHCAVCKEVFELHAEARELPCKHIYHSECILPWLSMRNSCPVCRHELPSD- 721
Query: 242 PQINNEISNSNEDENVGLTIWRLPGGGFAVGRFSGDGGGGENRMEHPIVYTEVDG 296
+ + + ++E +GLTIWRLPGGGFAVGRFSG GE+ + P+VYTE+DG
Sbjct: 722 --LETRVPSQIDEEAIGLTIWRLPGGGFAVGRFSGGRRTGESHL--PVVYTEMDG 874
>TC228165 similar to GB|AAP68298.1|31711884|BT008859 At3g46620 {Arabidopsis
thaliana;} , partial (26%)
Length = 747
Score = 187 bits (475), Expect = 7e-48
Identities = 101/203 (49%), Positives = 129/203 (62%), Gaps = 1/203 (0%)
Frame = +2
Query: 182 INESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNSCPVCRHELPCES 241
I E+H+ E+HCAVCKE FEL ARE+PCKHIYH++CILPWL+++NSCPVCRHELP +
Sbjct: 2 IGETHVETEAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSD- 178
Query: 242 PQINNEISNSNEDENVGLTIWRLPGGGFAVGRFSGDGGGGENRMEHPIVYTEVDGAFN-N 300
+ + + ++E +GLTIWRLPGGGFAVGRFSG GE+ P+VYTE+DG N N
Sbjct: 179 --LETRVPSQIDEETIGLTIWRLPGGGFAVGRFSGGRRTGESHF--PVVYTEMDGGLNTN 346
Query: 301 VGEPRRISWSLTSSRGGIGRSRGGAFRRMLSNLFGCLRGGGVRNQHSPFTTREFPQPMTM 360
G PRRIS S+ S+R + SRG F R++SN F G RN S + ++
Sbjct: 347 GGAPRRISRSVRSNR--VRESRG--FGRVISNFFSFFGRIGSRNSSSGHGS------VSR 496
Query: 361 RNNSASHTNENPSLRSRRTWSMD 383
+ S S R RTW MD
Sbjct: 497 SRSHVSSIFNRSSRRHSRTWVMD 565
>CO978602
Length = 613
Score = 139 bits (350), Expect = 2e-33
Identities = 80/144 (55%), Positives = 89/144 (61%), Gaps = 4/144 (2%)
Frame = -2
Query: 252 NEDENVGLTIWRLPGGGFAVGRFSGDGGGGENRMEHPIVYTEVDGAFNN-VGEPRRISWS 310
NE+ENVGLTIWRLPGGGFAVGRFSG G + E P+VYTE+DG FNN GEPRRISW
Sbjct: 594 NEEENVGLTIWRLPGGGFAVGRFSGGRRGADR--ELPVVYTEMDGGFNNGGGEPRRISW- 424
Query: 311 LTSSRGGIGRSRGGAFRRMLSNLFGCLRGGGVRNQHS---PFTTREFPQPMTMRNNSASH 367
SRG GR GG R NLFGC RGG S T R +MR +S+
Sbjct: 423 ---SRGNRGRESGG-LNRFFRNLFGCFRGGSSNTSSSGGASATQRSASSRESMRASSSRS 256
Query: 368 TNENPSLRSRRTWSMDANGGNRPW 391
+ + S RSRRTWSMD N G R W
Sbjct: 255 STMDLSPRSRRTWSMDVNSGMRAW 184
>TC229810 similar to GB|AAM16172.1|20334832|AY094016 At2g39720/T5I7.2
{Arabidopsis thaliana;} , partial (14%)
Length = 683
Score = 139 bits (350), Expect = 2e-33
Identities = 70/129 (54%), Positives = 87/129 (67%)
Frame = +3
Query: 207 REMPCKHIYHNECILPWLAIQNSCPVCRHELPCESPQINNEISNSNEDENVGLTIWRLPG 266
REMPCKH+YH++CILPWL+++NSCPVCRHELP E ++ E+E VGLTIWRLPG
Sbjct: 3 REMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQAAPETRVAGQIEEEAVGLTIWRLPG 182
Query: 267 GGFAVGRFSGDGGGGENRMEHPIVYTEVDGAFNNVGEPRRISWSLTSSRGGIGRSRGGAF 326
GGFAVGRF+G+ P+VYTE++ N+ RRI SL G + SRGG F
Sbjct: 183 GGFAVGRFAGES-------PLPVVYTEMESGGNSNEGSRRI--SLAVGGGRVRESRGG-F 332
Query: 327 RRMLSNLFG 335
R+ NLFG
Sbjct: 333 GRIFRNLFG 359
>TC215462 similar to UP|O22197 (O22197) Expressed protein (At2g40830)
(RING-H2 finger protein RHC1a), partial (36%)
Length = 1481
Score = 136 bits (343), Expect = 1e-32
Identities = 86/261 (32%), Positives = 131/261 (49%), Gaps = 24/261 (9%)
Frame = +3
Query: 2 SSHWCYRCNKFVRVWRLGMPICPDCDSGFLEDVEQ-------STHSANTVGGRRMRFP-- 52
++HWCY C + + V P+CP CD GF++++++ H+ ++ G + P
Sbjct: 162 ATHWCYACRQPI-VLDGRDPVCPYCDGGFVQELDELRGIAPNHNHTFSSQSGDFHQMPDI 338
Query: 53 MAAAMYMIGHRNNNYN------QNTFRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSR 106
A +G R ++ + F RHR N S F+ +RG GS +
Sbjct: 339 FDAIHAFMGQRGSDQRFGLMDAVDNFMRHRMAGRN----SNFD----VRGRSGSLPVPEQ 494
Query: 107 ERE--ENNEFELFYEDGAGSGLRALPPR-------MSELILGSGFERVMEQLSHVEANRS 157
+ + +F+ G L A PR + +G G E ++EQL+ +
Sbjct: 495 SWGVYSSGPYLIFHGQVPGFTLSAGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDQRGP 674
Query: 158 GNEGHNQQHLPALKSAVELLPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHN 217
PA +S+++ +PTI+I ++H+ +SHC VCKE FELG AREMPC HIYH+
Sbjct: 675 A---------PAARSSIDAMPTIKITQAHLRSDSHCPVCKEKFELGTEAREMPCNHIYHS 827
Query: 218 ECILPWLAIQNSCPVCRHELP 238
+CI+PWL NSCPVCR ELP
Sbjct: 828 DCIVPWLVQHNSCPVCRVELP 890
>TC215460 similar to UP|O22197 (O22197) Expressed protein (At2g40830)
(RING-H2 finger protein RHC1a), partial (28%)
Length = 1222
Score = 134 bits (336), Expect = 9e-32
Identities = 88/260 (33%), Positives = 131/260 (49%), Gaps = 23/260 (8%)
Frame = +1
Query: 2 SSHWCYRCNKFVRVWRLGMPICPDCDSGFLEDVEQST-----HSANTVGGRRMRFP--MA 54
++HWC+ C + V V +CP CD GF++++++ H+ + G + P
Sbjct: 70 ATHWCHACRQPV-VLDGRDAVCPYCDGGFVQELDELEGIAPHHTFCSQSGEFHQMPDIFD 246
Query: 55 AAMYMIGHRNNNYNQ-------NTFRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSRE 107
A +G R ++ + F RHR G S F+ +RG GS R
Sbjct: 247 AIPAFMGQRGSDQRSRLMDDAVDNFMRHR----TAGRNSNFD----VRGRSGSRPVPERS 402
Query: 108 RE--ENNEFELFYEDGAGSGLRALPPR-------MSELILGSGFERVMEQLSHVEANRSG 158
+ + +F+ GS A PR + +G G E ++EQL+ + R G
Sbjct: 403 WGVFSSGPYLIFHGQVPGSTFAAGSPRGGSRHVDFGDYFMGLGLEELIEQLTMND--RRG 576
Query: 159 NEGHNQQHLPALKSAVELLPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNE 218
PA S+++ +PTI+I ++H+ ++SHC VCKE FELG AREMPC HIYH++
Sbjct: 577 PP-------PAALSSIDAMPTIKITQAHLRLDSHCPVCKEKFELGTEAREMPCNHIYHSD 735
Query: 219 CILPWLAIQNSCPVCRHELP 238
CI+PWL NSCPVCR ELP
Sbjct: 736 CIVPWLVQHNSCPVCRVELP 795
>TC232119 similar to GB|AAP68298.1|31711884|BT008859 At3g46620 {Arabidopsis
thaliana;} , partial (20%)
Length = 773
Score = 134 bits (336), Expect = 9e-32
Identities = 60/97 (61%), Positives = 74/97 (75%)
Frame = +1
Query: 180 IEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNSCPVCRHELPC 239
++I SH ESHCAVC E FE+ AREMPC H+YH+ECI+PWL+++NSCPVCRHE+P
Sbjct: 7 VKILASHTYAESHCAVCMENFEINCDAREMPCGHVYHSECIVPWLSVRNSCPVCRHEVP- 183
Query: 240 ESPQINNEISNSNEDENVGLTIWRLPGGGFAVGRFSG 276
++E+ SN + VGLTIWRLPGGGFAVGRF G
Sbjct: 184 -----SDEVEESN-NNTVGLTIWRLPGGGFAVGRFIG 276
>TC215461 weakly similar to UP|Q6Z303 (Q6Z303) Zinc finger-like, partial
(28%)
Length = 1453
Score = 127 bits (320), Expect = 7e-30
Identities = 95/310 (30%), Positives = 140/310 (44%), Gaps = 27/310 (8%)
Frame = +3
Query: 2 SSHWCYRCNKFVRVWRLGMP-ICPDCDSGFLEDVE-------QSTHSANTVGGRRMRFPM 53
+++WCY C + +W G ICP CD GF++++ Q S+ +M M
Sbjct: 186 TTYWCYTCRQ--PIWLEGREAICPYCDGGFVQELNELRGVARQHGFSSRMEDAHQMPDIM 359
Query: 54 AAAMYMIGHRNNNYN------QNTFRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSRE 107
A ++ R + + F R R G + F+ + R G GS G+
Sbjct: 360 DAVRAVMEQRGSEPRIRVRDAVDNFMRQRM----AGRYTNFD--VRRRSGSGSGSGSILI 521
Query: 108 REE------NNEFELFYEDGAG-----SGLRALPPRMS--ELILGSGFERVMEQLSHVEA 154
+E + + +F+ G R P R+ + LG E ++EQ H+
Sbjct: 522 PDETWGVFSSGPYLIFHGQAPGFTNSNGSSRGGPRRVDFGDYFLGPRLEGLIEQ--HISN 695
Query: 155 NRSGNEGHNQQHLPALKSAVELLPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHI 214
+R G PA S+++ +PTI+I H+ +SHC VCKE FELG AR+MPC H+
Sbjct: 696 DRLGPP-------PASHSSIDAMPTIKITHEHLQSDSHCPVCKERFELGSEARKMPCNHV 854
Query: 215 YHNECILPWLAIQNSCPVCRHELPCESPQINNEISNSNEDENVGLTIWRLPGGGFAVGRF 274
YH++CI+PWL + NSCPVCR ELP + G IW G G G
Sbjct: 855 YHSDCIVPWLVLHNSCPVCRVELP-----------PKEHTSSRGRRIW---GNGSGSGSS 992
Query: 275 SGDGGGGENR 284
+ G ENR
Sbjct: 993 NDISRGRENR 1022
>TC227652 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partial (35%)
Length = 1209
Score = 127 bits (319), Expect = 9e-30
Identities = 83/283 (29%), Positives = 131/283 (45%), Gaps = 3/283 (1%)
Frame = +3
Query: 5 WCYRCNKFVRVWRLGMPICPDCDSGFLEDVEQSTHSANTVGGRRMRFPMAAAMYMIGHRN 64
+C+ C++ + P CP C F+E+ + + N + ++
Sbjct: 96 FCHVCSQRITCSDESEPFCPICMESFVEECNPNNPNPNLFPENEESSDSEISFSLLP--- 266
Query: 65 NNYNQNTFRRHRRNNVNGGDISPFNPIIMIRGG--GGSSEGTSREREENNEFELFYEDGA 122
+T R R + F+P++ ++ G ++G + + + F
Sbjct: 267 --LFLSTVSRSRP------EPDMFDPMVFLQNHIQGLRADGANIQVD-------FGHPSE 401
Query: 123 GSGLRALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLPALKSAVELLPTIEI 182
G R LP + + +G G E+ ++QL+ + NR G PA K AVE LPTI +
Sbjct: 402 QQGFR-LPANIGDYFMGPGLEQFIQQLADNDPNRYGTP-------PAAKDAVENLPTITV 557
Query: 183 NESHMNVE-SHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNSCPVCRHELPCES 241
++ +N E + CAVC++ FE G +MPCKH YH +C++PWL + NSCPVCR+ELP +
Sbjct: 558 DDELLNSELNQCAVCQDEFEKGSLVTQMPCKHAYHGDCLIPWLRLHNSCPVCRYELPTDD 737
Query: 242 PQINNEISNSNEDENVGLTIWRLPGGGFAVGRFSGDGGGGENR 284
NE+ + D R G G G G GGGG NR
Sbjct: 738 ADYENEVRGNGGDGGS-----RTGGSGDGGGGSGGGGGGGSNR 851
>TC232621 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partial (33%)
Length = 1315
Score = 123 bits (309), Expect = 1e-28
Identities = 106/403 (26%), Positives = 160/403 (39%), Gaps = 17/403 (4%)
Frame = +3
Query: 4 HWCYRCNKFVRVWRLGMP--ICPDCDSGFLEDVEQSTHSANTVGGRRM--RFPMAAAMYM 59
++C++CN+ V + +CP C+ GFLE++E + N FP+A A +
Sbjct: 69 YFCHQCNRTVSISPSPSSDLLCPTCNGGFLEELEFPIPNPNPNPPNPFFPDFPLAGAATI 248
Query: 60 IGHRNNNYNQNTFRRHRRNNVNGGDISP--FNPIIMIRGGGGSSEGTSREREENNEFELF 117
F N D + FNP++ + + + +L
Sbjct: 249 PLVLPGAAASPPFEDLSALFGNRPDAAADAFNPLVFL-------QNYFQTLRAGGNLQLV 407
Query: 118 YEDGAGSGLRALPP-RMSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLPALKSAVEL 176
E G G P + G G E +++ L+ + NR G PA KS VE
Sbjct: 408 IESGDPGGAFRFPGVTHGDYFFGPGLEELIQHLAENDPNRYGTP-------PASKSVVEG 566
Query: 177 LPTIEINESHMNVES-HCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNSCPVCRH 235
LP + + E + +S CAVCK+ FELG +A+++PCKHIYH +CILPWL + NSCPVCR+
Sbjct: 567 LPDVSVTEELLASDSSQCAVCKDTFELGETAKQIPCKHIYHADCILPWLELHNSCPVCRY 746
Query: 236 ELPCESPQINNEISNSNEDENVGLTIWRLPGGGFAVGRFSGDGGGGENRMEHPIVYTEVD 295
ELP + P R G GG
Sbjct: 747 ELPTDDPDYEQR------------------------ARRGGSGG---------------- 806
Query: 296 GAFNNVGEPRRISWSLTSSRGGIGRSRGGAFRRMLSNLFGCLRGGGVRNQHS------PF 349
A G +++W++ GG S G GGG +Q P+
Sbjct: 807 AAAAGSGAAPQVNWNMALGSGGSADSSGS--------------GGGDNSQRRRFRVSLPW 944
Query: 350 TTREFPQPMTM---RNNSASHTNENPSLRSRRTWSMDANGGNR 389
R+F + + N+S ++ N N + S +N GNR
Sbjct: 945 PFRQFAETSNVGSGNNDSNNNNNSNSNSDSSGNNGGQSNSGNR 1073
>TC227651 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partial (33%)
Length = 1364
Score = 117 bits (294), Expect = 7e-27
Identities = 61/154 (39%), Positives = 85/154 (54%), Gaps = 2/154 (1%)
Frame = +1
Query: 133 MSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLPALKSAVELLPTIEINESHMNVE-S 191
+ + +G G E+ ++QL+ + NR G PA K AVE LPT+ +++ +N E +
Sbjct: 439 IGDYFMGPGLEQFIQQLADNDPNRYGTP-------PAAKDAVENLPTVTVDDDLLNSELN 597
Query: 192 HCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNSCPVCRHELPCESPQINNEISNS 251
CAVC++ FE G +MPCKH YH +C++PWL + NSCPVCR+ELP + NE+
Sbjct: 598 QCAVCQDEFEKGSKVTQMPCKHAYHGDCLIPWLRLHNSCPVCRYELPTDDADYENEVH-- 771
Query: 252 NEDENVGLTIWRLPGGGFAVGRFSG-DGGGGENR 284
GG A R G DGGGG NR
Sbjct: 772 ---------------GGDAGSRTGGSDGGGGSNR 828
>AW349923 weakly similar to PIR|T00747|T007 RING-H2 finger protein RHC1a
[imported] - Arabidopsis thaliana, partial (17%)
Length = 752
Score = 108 bits (271), Expect = 3e-24
Identities = 49/99 (49%), Positives = 65/99 (65%)
Frame = -2
Query: 160 EGHNQQHLPALKSAVELLPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNEC 219
E Q PA + A+E +PT++I +H+ S C VC+E FE+G ARE+ CKHIYH++C
Sbjct: 727 ENDRQXXAPAPERAIEAIPTVKIESAHLKENSQCPVCQEEFEVGGEARELQCKHIYHSDC 548
Query: 220 ILPWLAIQNSCPVCRHELPCESPQINNEISNSNEDENVG 258
I+PWL + NSCPVCRHE+P S S+S DE VG
Sbjct: 547 IVPWLRLHNSCPVCRHEVPVPSSS-----SSSEGDECVG 446
>TC229809 similar to GB|AAP68298.1|31711884|BT008859 At3g46620 {Arabidopsis
thaliana;} , partial (9%)
Length = 724
Score = 103 bits (256), Expect = 2e-22
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +1
Query: 225 AIQNSCPVCRHELPCESPQINNEISNSNEDENVGLTIWRLPGGGFAVGRFSGDGGGGENR 284
+++NSCPVCRHELP E ++ E+E VGLTIWRLPGGGFAVGRF+G+
Sbjct: 1 SMRNSCPVCRHELPSEQTAPETRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGES------ 162
Query: 285 MEHPIVYTEVDGAFNNVGEPRRISWSLTSSRGGIGRSRGGAFRRMLSNLFG 335
P+VYTE++ N+ RRIS ++ S R + SRGG F R+ +LFG
Sbjct: 163 -HLPVVYTEMESDGNSNEGSRRISLAVGSGR--VRESRGGGFGRIFRHLFG 306
>TC211191 similar to GB|AAM16172.1|20334832|AY094016 At2g39720/T5I7.2
{Arabidopsis thaliana;} , partial (9%)
Length = 437
Score = 101 bits (251), Expect = 7e-22
Identities = 53/99 (53%), Positives = 69/99 (69%), Gaps = 3/99 (3%)
Frame = -1
Query: 2 SSHWCYRCNKFVRVWRLGMPICPDCDSGFLEDVEQSTHSANTVGGR-RMRFPMAAAMYMI 60
SS+WCYRC++FVRVW +CPDCD GF+E++E S + R R RFP AAAMYMI
Sbjct: 308 SSYWCYRCSRFVRVWPHHTVVCPDCDGGFIEEIEHPPRSVHLDPRRHRHRFP-AAAMYMI 132
Query: 61 GHRNNNYNQ--NTFRRHRRNNVNGGDISPFNPIIMIRGG 97
G R ++ + ++ RR RR NGGD SPFNP+I++RGG
Sbjct: 131 GQRPSSDPRPASSLRRTRR---NGGDRSPFNPVIVLRGG 24
>BU549221
Length = 326
Score = 87.8 bits (216), Expect = 8e-18
Identities = 37/72 (51%), Positives = 51/72 (70%)
Frame = -2
Query: 167 LPALKSAVELLPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAI 226
L A +S+++ +PTI+I H+ C+V E FE+G AR+MPC HIYH++CI+PWL
Sbjct: 295 LGASQSSIDAMPTIKITHEHLYSNPKCSVXIERFEVGSEARKMPCDHIYHSDCIVPWLVH 116
Query: 227 QNSCPVCRHELP 238
NSCPVCR +LP
Sbjct: 115 HNSCPVCRGKLP 80
>TC217075 similar to UP|Q9SPL2 (Q9SPL2) COP1-interacting protein CIP8
(At5g64920), partial (34%)
Length = 1267
Score = 85.9 bits (211), Expect = 3e-17
Identities = 43/106 (40%), Positives = 65/106 (60%)
Frame = +2
Query: 142 FERVMEQLSHVEANRSGNEGHNQQHLPALKSAVELLPTIEINESHMNVESHCAVCKEPFE 201
+E +++ L+ E++ G G PA K+AVE LPT++I V CA+CK+
Sbjct: 674 YEALLQTLA--ESDGGGRRGAP----PASKAAVEALPTVKIASESEAVA--CAICKDLLG 829
Query: 202 LGISAREMPCKHIYHNECILPWLAIQNSCPVCRHELPCESPQINNE 247
+G A+ +PC H YH +CI+PWL+ +NSCPVCR+ELP + + E
Sbjct: 830 VGDLAKRLPCGHGYHGDCIVPWLSSRNSCPVCRYELPTDDKEYEEE 967
Score = 32.7 bits (73), Expect = 0.29
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 4 HWCYRCNKFVRVWRL-GMP--ICPDCDSGFLEDVEQSTHS 40
+WCY C K V V L +P +C +C +GF+E + + S
Sbjct: 77 YWCYHCEKRVSVETLANLPDVVCGECKNGFVESMPTPSRS 196
>TC230070 weakly similar to GB|AAB68216.1|1244771|SCU43703 Ypl146cp
{Saccharomyces cerevisiae;} , partial (5%)
Length = 1276
Score = 80.5 bits (197), Expect = 1e-15
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = +2
Query: 142 FERVMEQLSHVEANRSGNEGHNQQHLPALKSAVELLPTIEINESH-MNVESHCAVCKEPF 200
FE ++E L+ +++R G PA S V LP + I + H + E CA+CK+
Sbjct: 386 FEDLLEHLAENDSSRRGAP-------PAAVSFVNNLPRVVIGKEHEKHGELVCAICKDVL 544
Query: 201 ELGISAREMPCKHIYHNECILPWLAIQNSCPVCRHELPCE 240
++PC H+YH CILPWL+ +NSCP+CR+ELP +
Sbjct: 545 APRTEVNQLPCSHLYHINCILPWLSARNSCPLCRYELPTD 664
>AI460473 similar to GP|15450687|gb| AT5g59550/f2o15_210 {Arabidopsis
thaliana}, partial (7%)
Length = 300
Score = 77.0 bits (188), Expect = 1e-14
Identities = 47/139 (33%), Positives = 62/139 (43%)
Frame = +2
Query: 3 SHWCYRCNKFVRVWRLGMPICPDCDSGFLEDVEQSTHSANTVGGRRMRFPMAAAMYMIGH 62
S+WCY C +FV + +CP C GF+E V S
Sbjct: 2 SYWCYSCTRFVHIQEQNDVVCPRCHGGFVEKVTAPQSS---------------------- 115
Query: 63 RNNNYNQNTFRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSREREENNEFELFYEDGA 122
+ FRR RR N G+ S FNP+I++RG G +E + EL+Y+
Sbjct: 116 ------RQGFRRRRR---NAGNHSAFNPVIVLRGPG---------EDEESSXELYYDGFD 241
Query: 123 GSGLRALPPRMSELILGSG 141
G GLR LP MSE +LGSG
Sbjct: 242 GEGLRPLPSTMSEFLLGSG 298
>TC207072 similar to UP|Q8RXD3 (Q8RXD3) ABI3-interacting protein 2, partial
(79%)
Length = 1208
Score = 75.5 bits (184), Expect = 4e-14
Identities = 32/73 (43%), Positives = 45/73 (60%), Gaps = 3/73 (4%)
Frame = +2
Query: 168 PALKSAVELLPTIEINE---SHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWL 224
PA K V LP I + E +++ ++ CA+C+E L +E+PCKH +H C+ PWL
Sbjct: 740 PASKEVVANLPVITLTEEILANLGKDAECAICRENLVLNDKMQELPCKHTFHPPCLKPWL 919
Query: 225 AIQNSCPVCRHEL 237
NSCP+CRHEL
Sbjct: 920 DEHNSCPICRHEL 958
>TC217076 similar to UP|Q9SPL2 (Q9SPL2) COP1-interacting protein CIP8
(At5g64920), partial (13%)
Length = 575
Score = 75.1 bits (183), Expect = 5e-14
Identities = 40/101 (39%), Positives = 56/101 (54%), Gaps = 6/101 (5%)
Frame = +3
Query: 177 LPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNSCPVCRHE 236
LPT++I V CA+CK+ + +A+ +PC H YH +CI+PWL+ +NSCPVCR E
Sbjct: 3 LPTVKIASESEAVA--CAICKDLLGVEDAAKRLPCGHRYHGDCIVPWLSSRNSCPVCRFE 176
Query: 237 LPCESPQINNE------ISNSNEDENVGLTIWRLPGGGFAV 271
LP + + E SNSN + G GGG A+
Sbjct: 177 LPTDDKEYEEERVVIAASSNSNGASSSG-------GGGSAI 278
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,578,153
Number of Sequences: 63676
Number of extensions: 325695
Number of successful extensions: 2767
Number of sequences better than 10.0: 259
Number of HSP's better than 10.0 without gapping: 2456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2708
length of query: 391
length of database: 12,639,632
effective HSP length: 99
effective length of query: 292
effective length of database: 6,335,708
effective search space: 1850026736
effective search space used: 1850026736
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC124953.18