TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124952.8 - phase: 0 /pseudo
         (819 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC230007 weakly similar to GB|AAA58611.1|183250|HUMGLIA1F glial ...    31  1.9
TC217841 similar to UP|Q9XI59 (Q9XI59) F9L1.4 protein, partial (...    31  2.5
TC230009 similar to UP|SMB2_HUMAN (P38935) DNA-binding protein S...    30  3.3
TC233235                                                               30  4.3
TC212395                                                               29  7.3
TC210675 weakly similar to UP|O65516 (O65516) Aldehyde dehydroge...    29  9.6
TC223992 similar to GB|AAN46773.1|24111299|BT001019 At3g52990/F8...    29  9.6

>TC230007 weakly similar to GB|AAA58611.1|183250|HUMGLIA1F glial factor-1
           {Homo sapiens;} , partial (22%)
          Length = 491

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = -2

Query: 263 ASLQSVDTFTRSSSFLIVDPARNLFRILCHIQVFALARWLSVKWPVEFYEFSRHLQWTIP 322
           +S  S++ F R+ S L V  ++     L         R  S++ P  F+EF R +   + 
Sbjct: 256 SSKYSINRF-RNPSPLTVSVSQTRQHCLLDRVTATFIRRRSLRKPTSFFEFDRTIDIIMA 80

Query: 323 SFSVPWESGPMSL 335
           SFS+PW    + +
Sbjct: 79  SFSLPWNPSTVEI 41


>TC217841 similar to UP|Q9XI59 (Q9XI59) F9L1.4 protein, partial (17%)
          Length = 571

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = +3

Query: 562 YFVFLESIRRVSLGILAGVFIHTRSQSSKSPIIIMLSITSFMLFF 606
           YF+ LES+  + + +    F +    +S+ PI++++ + + +L F
Sbjct: 171 YFIILESLILIEIALTLSTFFYACLSNSQLPILVLMDVFTKILIF 305


>TC230009 similar to UP|SMB2_HUMAN (P38935) DNA-binding protein SMUBP-2
           (Immunoglobulin MU binding protein 2) (SMUBP-2) (Glial
           factor-1) (GF-1), partial (5%)
          Length = 719

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 303 SVKWPVEFYEFSRHLQWTIPSFSVPWESGPMSL 335
           S++ P  F+EF R +   + SFS+PW+   + +
Sbjct: 254 SLRKPTSFFEFDRTIDIIMASFSLPWKPSTVEI 156


>TC233235 
          Length = 321

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 24/86 (27%), Positives = 41/86 (46%)
 Frame = +2

Query: 562 YFVFLESIRRVSLGILAGVFIHTRSQSSKSPIIIMLSITSFMLFFMVLKKPFIKKKVQLV 621
           ++ +++ +  V LGI+A  +I    +SSK  I +   ++   L   V      KKK+ L 
Sbjct: 56  FWDYIKLMSTVFLGIIAAFYIEETYKSSK*NIYLKYLLSCH*LHISVK-----KKKILLA 220

Query: 622 EIISLTCEVAFFATCFVLLKKDFSVR 647
             I L  EV +      L+ KDF ++
Sbjct: 221 LYI*LDLEVPYIVN*V*LVFKDFKIK 298


>TC212395 
          Length = 585

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 18/47 (38%), Positives = 24/47 (50%)
 Frame = -3

Query: 43  PSSFKILKPNLMYSLLVSLSSTVQYSRAILVMDKNFCTDIAGNSFTR 89
           PSS K+L      S+ V  S+T++ SR    M+  FC  I G  F R
Sbjct: 196 PSSSKLLSLFFAASVSVFFSATLRSSRVTSAME*YFCIWITGIQFRR 56


>TC210675 weakly similar to UP|O65516 (O65516) Aldehyde dehydrogenase like
           protein, partial (12%)
          Length = 464

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = -1

Query: 306 WPVEFYEFSRHLQWTIPSFSVPWESGPMSLFMVGSSPFGSSSSSAKALATIPNMLLGQNL 365
           W V    +  H +W    FS  WE     + +    PF +++ S       P+ L+  +L
Sbjct: 425 WEVPRRNYENHTKWF*QHFSFSWEEKKRDITLFRGHPFLNAAQSFAG*FFYPSNLITVSL 246

Query: 366 N 366
           N
Sbjct: 245 N 243


>TC223992 similar to GB|AAN46773.1|24111299|BT001019 At3g52990/F8J2_160
           {Arabidopsis thaliana;} , partial (31%)
          Length = 567

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 455 GITFGKLLQYKEVHHEGETFHWYQELIR 482
           GIT  K L  +++HH   T HW  +L++
Sbjct: 363 GITPAKFLPQEQLHHCHPTLHWQHQLLQ 280


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.325    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,320,891
Number of Sequences: 63676
Number of extensions: 504503
Number of successful extensions: 3668
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3665
length of query: 819
length of database: 12,639,632
effective HSP length: 105
effective length of query: 714
effective length of database: 5,953,652
effective search space: 4250907528
effective search space used: 4250907528
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)