BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124215.1 + phase: 0
(45 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI971349 similar to GP|13365610|db SCARECROW {Pisum sativum}, pa... 87 1e-18
TC231668 homologue to UP|Q9AVK4 (Q9AVK4) SCARECROW, partial (28%) 83 4e-17
TC234365 similar to UP|Q7F1I1 (Q7F1I1) SCARECROW protein-like pr... 55 8e-09
TC228139 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible gibberel... 41 2e-04
TC220761 similar to UP|Q7G7J6 (Q7G7J6) Gibberellin-insensitive p... 37 0.002
BF008821 weakly similar to GP|2339980|emb RGA2 protein {Arabidop... 36 0.004
TC231223 weakly similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible g... 36 0.005
TC211103 weakly similar to UP|Q6S5L6 (Q6S5L6) GAI protein, parti... 35 0.011
TC204217 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, parti... 35 0.011
TC204219 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial... 35 0.011
BU764564 weakly similar to PIR|T51234|T512 scarecrow-like protei... 33 0.025
TC228546 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partia... 33 0.025
TC227563 similar to PIR|E96542|E96542 scarecrow-like protein [im... 33 0.042
TC220187 similar to PIR|E86347|E86347 scarecrow-like 1 protein F... 33 0.042
TC230189 similar to UP|Q9SCR0 (Q9SCR0) Scarecrow-like 7 (SCL7), ... 32 0.055
TC226166 similar to UP|O23724 (O23724) GAI protein, partial (70%) 32 0.072
TC226163 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, parti... 32 0.072
TC230386 similar to GB|AAF87889.1|9454566|AC012561 scarecrow-lik... 30 0.21
TC220571 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional... 30 0.21
TC219232 similar to UP|Q9LDL7 (Q9LDL7) SCARECROW gene regulator-... 30 0.21
>BI971349 similar to GP|13365610|db SCARECROW {Pisum sativum}, partial (15%)
Length = 745
Score = 87.4 bits (215), Expect = 1e-18
Identities = 40/45 (88%), Positives = 41/45 (90%)
Frame = -3
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNIIPHHN 45
MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFH + I HHN
Sbjct: 464 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFH--SAITHHN 336
>TC231668 homologue to UP|Q9AVK4 (Q9AVK4) SCARECROW, partial (28%)
Length = 706
Score = 82.8 bits (203), Expect = 4e-17
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = +3
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFH 36
MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFH
Sbjct: 582 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFH 689
>TC234365 similar to UP|Q7F1I1 (Q7F1I1) SCARECROW protein-like protein,
partial (15%)
Length = 501
Score = 55.1 bits (131), Expect = 8e-09
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +3
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
MFP GYTLVE+NG L GWKDL LL ASAW+P
Sbjct: 84 MFPWRGYTLVEENGSLNFGWKDLSLLIASAWQP 182
>TC228139 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible
gibberellin-responsive protein, partial (47%)
Length = 1497
Score = 40.8 bits (94), Expect = 2e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAW 31
SE YTLVE +G + LGWKD L++ASAW
Sbjct: 772 SEHYTLVEKDGAMLLGWKDRNLISASAW 855
>TC220761 similar to UP|Q7G7J6 (Q7G7J6) Gibberellin-insensitive protein
OsGAI, partial (23%)
Length = 719
Score = 37.4 bits (85), Expect = 0.002
Identities = 15/32 (46%), Positives = 22/32 (67%)
Frame = +3
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 32
+F +EGY++ E+ G L LGW L+ ASAW+
Sbjct: 543 LFSAEGYSVEENQGCLTLGWHSRPLIAASAWQ 638
>BF008821 weakly similar to GP|2339980|emb RGA2 protein {Arabidopsis
thaliana}, partial (18%)
Length = 430
Score = 36.2 bits (82), Expect = 0.004
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAW 31
+F +EGY + E+ G L LGW L+ ASAW
Sbjct: 221 LFSAEGYCVEENQGCLTLGWHSRPLIAASAW 313
>TC231223 weakly similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible
gibberellin-responsive protein, partial (22%)
Length = 653
Score = 35.8 bits (81), Expect = 0.005
Identities = 15/28 (53%), Positives = 20/28 (70%)
Frame = +1
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAW 31
S+ Y LVE +G + LGWKD L++ SAW
Sbjct: 292 SKHYNLVEKDGAMLLGWKDRNLISTSAW 375
>TC211103 weakly similar to UP|Q6S5L6 (Q6S5L6) GAI protein, partial (27%)
Length = 807
Score = 34.7 bits (78), Expect = 0.011
Identities = 14/32 (43%), Positives = 21/32 (64%)
Frame = +3
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 32
+F +EG+ + E+ G L LGW L+ ASAW+
Sbjct: 519 LFSAEGFCVQENQGSLTLGWHSRPLIAASAWQ 614
>TC204217 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partial (29%)
Length = 966
Score = 34.7 bits (78), Expect = 0.011
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = +2
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWRPP 34
+GY + E+NG L LGW L+ SAW+ P
Sbjct: 515 DGYRVEENNGCLMLGWHTRPLIATSAWKLP 604
>TC204219 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial (50%)
Length = 1208
Score = 34.7 bits (78), Expect = 0.011
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = +1
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWRPP 34
+GY + E+NG L LGW L+ SAW+ P
Sbjct: 808 DGYRVEENNGCLMLGWHTRPLIATSAWKLP 897
>BU764564 weakly similar to PIR|T51234|T512 scarecrow-like protein 1
[imported] - Arabidopsis thaliana (fragment), partial
(13%)
Length = 281
Score = 33.5 bits (75), Expect = 0.025
Identities = 13/28 (46%), Positives = 18/28 (63%)
Frame = +3
Query: 7 YTLVEDNGILKLGWKDLCLLTASAWRPP 34
Y + E+ G L GW+D L+ ASAW+ P
Sbjct: 72 YKIKEEMGALHFGWEDKSLIVASAWKLP 155
>TC228546 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial (60%)
Length = 1493
Score = 33.5 bits (75), Expect = 0.025
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +3
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
+E Y L +G L LGWK + T+SAWR
Sbjct: 978 NENYRLQHRDGALYLGWKSRAMCTSSAWR 1064
>TC227563 similar to PIR|E96542|E96542 scarecrow-like protein [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(71%)
Length = 1274
Score = 32.7 bits (73), Expect = 0.042
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = +2
Query: 7 YTLVEDNGILKLGWKDLCLLTASAWR 32
YTL E +G L LGW + L+T+ AWR
Sbjct: 1079 YTLEERDGALCLGWMNQVLITSCAWR 1156
>TC220187 similar to PIR|E86347|E86347 scarecrow-like 1 protein F24J8.8 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(39%)
Length = 810
Score = 32.7 bits (73), Expect = 0.042
Identities = 13/28 (46%), Positives = 18/28 (63%)
Frame = +3
Query: 7 YTLVEDNGILKLGWKDLCLLTASAWRPP 34
Y + E+ G L GW+D L+ ASAW+ P
Sbjct: 615 YKIKEEMGALHFGWEDKNLIVASAWKLP 698
>TC230189 similar to UP|Q9SCR0 (Q9SCR0) Scarecrow-like 7 (SCL7), partial
(25%)
Length = 973
Score = 32.3 bits (72), Expect = 0.055
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +3
Query: 7 YTLVEDN--GILKLGWKDLCLLTASAWR 32
++LVE G L L WKD+ LLT S+WR
Sbjct: 396 FSLVESKPPGFLSLAWKDVPLLTVSSWR 479
>TC226166 similar to UP|O23724 (O23724) GAI protein, partial (70%)
Length = 1613
Score = 32.0 bits (71), Expect = 0.072
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNIIPHH 44
+GY + E+NG L LGW L+ S W+ T +++ H
Sbjct: 1096 DGYRVEENNGCLMLGWHTRPLIATSVWQ--LATKSVVAAH 1209
>TC226163 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partial (20%)
Length = 859
Score = 32.0 bits (71), Expect = 0.072
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 6 GYTLVEDNGILKLGWKDLCLLTASAWR 32
GY + E+NG L LGW L+ SAW+
Sbjct: 342 GYRVEENNGCLMLGWHTRPLIATSAWQ 422
>TC230386 similar to GB|AAF87889.1|9454566|AC012561 scarecrow-like 3 protein;
partial cDNA clone scarecrow-like 3, SCL3, gb|AF036301
comes from this gene {Arabidopsis thaliana;} , partial
(19%)
Length = 619
Score = 30.4 bits (67), Expect = 0.21
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWR 32
EGY + ++NG + + W+D + + SAWR
Sbjct: 198 EGYRMRDENGCVLICWEDRPMYSISAWR 281
>TC220571 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional
regulator-like, partial (32%)
Length = 569
Score = 30.4 bits (67), Expect = 0.21
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = +1
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
+ G T+ E+NG + GW L ASAWR
Sbjct: 358 NSGLTVKEENGGICFGWMGRTLTVASAWR 444
>TC219232 similar to UP|Q9LDL7 (Q9LDL7) SCARECROW gene regulator-like
(Phytochrome A signal transduction 1 protein), partial
(38%)
Length = 881
Score = 30.4 bits (67), Expect = 0.21
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = +3
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
S+ Y L +G L LGW + + T+SAWR
Sbjct: 480 SQNYRLEHRDGALYLGWMNRHMATSSAWR 566
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.141 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,511,961
Number of Sequences: 63676
Number of extensions: 41190
Number of successful extensions: 277
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of query: 45
length of database: 12,639,632
effective HSP length: 21
effective length of query: 24
effective length of database: 11,302,436
effective search space: 271258464
effective search space used: 271258464
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)
Medicago: description of AC124215.1