BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124214.6 + phase: 0
(484 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC222052 300 1e-81
TC209482 292 3e-79
BG726231 128 6e-30
BQ081362 62 7e-10
CD416660 52 5e-07
TC223794 41 0.001
TC205503 UP|Q7XA50 (Q7XA50) Sorbitol-like transporter, complete 39 0.005
TC213989 weakly similar to UP|Q94BZ1 (Q94BZ1) AT5g13750/MXE10_2 ... 36 0.034
TC203723 similar to UP|Q9ZWQ4 (Q9ZWQ4) UDP-glycose:flavonoid gly... 35 0.098
CF805717 35 0.098
TC211029 similar to UP|Q96VI4 (Q96VI4) Protease 1, partial (3%) 33 0.22
TC209911 weakly similar to UP|Q94BZ1 (Q94BZ1) AT5g13750/MXE10_2 ... 33 0.37
BM526012 32 0.63
TC228611 weakly similar to GB|CAA72487.1|1890317|ATP26A peroxida... 32 0.83
TC225096 similar to UP|Q9M6R6 (Q9M6R6) RNA helicase, partial (9%) 32 0.83
BQ630440 weakly similar to PIR|T12079|T120 non-specific lipid tr... 32 0.83
TC206893 similar to UP|Q70I39 (Q70I39) Coatomer alpha subunit-li... 31 1.1
TC211828 similar to UP|RPIA_ARATH (Q9ZU38) Probable-ribose 5-pho... 31 1.1
TC224144 homologue to UP|Q8S564 (Q8S564) 4-coumarate:coenzyme A ... 31 1.4
TC215110 similar to UP|Q9SKU1 (Q9SKU1) Expressed protein (At2g20... 31 1.4
>TC222052
Length = 832
Score = 300 bits (768), Expect = 1e-81
Identities = 147/180 (81%), Positives = 163/180 (89%), Gaps = 4/180 (2%)
Frame = +2
Query: 309 CGILGTLAGGLVLDYMTNTLSNAFKLLSLTTLVGGAFCFGAFAFKSMYGFLALFAIGELL 368
CGILGT+AGG VLD+MTNT+SNAFKLLS+ T +GGA CFGAF FKS YGFLALFA+GELL
Sbjct: 2 CGILGTVAGGFVLDFMTNTISNAFKLLSIATFIGGACCFGAFLFKSQYGFLALFAVGELL 181
Query: 369 VFATQGPVNFVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSAPLVGVVQDHINNWRTTALI 428
VFATQGPVN+VCLHCVKPSLRPLSMAMSTVAIHIFGDVPS+PLVG++QD INNWRTTALI
Sbjct: 182 VFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGLMQDKINNWRTTALI 361
Query: 429 LTTIFFPAAAIWFIGIFLNSKDKFNEESEHQVSRVEGTTTAPLLEEKTAEP----KSQEC 484
LTTIFFPAAAIWFIGIFL S D+FNE+SEH+VS VE T+TAPLLEE TAE +S+EC
Sbjct: 362 LTTIFFPAAAIWFIGIFLPSVDRFNEDSEHEVSSVERTSTAPLLEENTAETSASGQSREC 541
>TC209482
Length = 921
Score = 292 bits (747), Expect = 3e-79
Identities = 141/212 (66%), Positives = 171/212 (80%)
Frame = +1
Query: 271 YIAYNFVIGAYSYWGPKAGYSIYNMTNADMIFGGITIVCGILGTLAGGLVLDYMTNTLSN 330
Y+AYNFVIGAYSYWGPKAGYSIY+M NAD++FGGITIVCGI+GTLAGGL LD +++T+SN
Sbjct: 1 YLAYNFVIGAYSYWGPKAGYSIYHMNNADLLFGGITIVCGIVGTLAGGLFLDRISSTISN 180
Query: 331 AFKLLSLTTLVGGAFCFGAFAFKSMYGFLALFAIGELLVFATQGPVNFVCLHCVKPSLRP 390
AFKLLS T +G FC AF FKS+ GF+ F++GELL+F TQ PVN+V L CVKPSLRP
Sbjct: 181 AFKLLSGATFLGAIFCLIAFLFKSLSGFIVFFSMGELLIFVTQAPVNYVSLRCVKPSLRP 360
Query: 391 LSMAMSTVAIHIFGDVPSAPLVGVVQDHINNWRTTALILTTIFFPAAAIWFIGIFLNSKD 450
LSMA+STV+IH+FGDVPS+PLVGV+QDHIN+WR TAL LT+IFF AA IWFIGIFL S D
Sbjct: 361 LSMAISTVSIHVFGDVPSSPLVGVLQDHINDWRKTALCLTSIFFLAAVIWFIGIFLKS-D 537
Query: 451 KFNEESEHQVSRVEGTTTAPLLEEKTAEPKSQ 482
++++ E Q + G PLL+ + SQ
Sbjct: 538 VYDKDDEEQSATTRGGKLTPLLDGSSDTTSSQ 633
>BG726231
Length = 415
Score = 128 bits (321), Expect = 6e-30
Identities = 76/138 (55%), Positives = 78/138 (56%), Gaps = 55/138 (39%)
Frame = +1
Query: 227 VLMLPFAILGFVMKP------------------------------------LQLK----- 245
VLM PFAILGFVMKP L LK
Sbjct: 1 VLMSPFAILGFVMKPLQLKGFAPTDSEKALTLGTVASEVSDVGASNGKDEALSLKAEFRD 180
Query: 246 --------------DQLSLFLKDMKELLSDKVFVVNVLGYIAYNFVIGAYSYWGPKAGYS 291
DQ S FLKDMKELL DKVFVVNVLGYIAYNFVIGAYSYWGPKAGYS
Sbjct: 181 KSSHEPSRSKCTILDQFSRFLKDMKELLLDKVFVVNVLGYIAYNFVIGAYSYWGPKAGYS 360
Query: 292 IYNMTNADMIFGGITIVC 309
IYNMTNADM+FGGIT+VC
Sbjct: 361 IYNMTNADMMFGGITVVC 414
>BQ081362
Length = 421
Score = 61.6 bits (148), Expect = 7e-10
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +1
Query: 414 VVQDHINNWRTTALILTTIFFPAAAIWFIG 443
++QD INNWRTTALILTTIFFPAAAIWFIG
Sbjct: 76 IMQDKINNWRTTALILTTIFFPAAAIWFIG 165
>CD416660
Length = 542
Score = 52.4 bits (124), Expect = 5e-07
Identities = 24/36 (66%), Positives = 30/36 (82%)
Frame = -1
Query: 443 GIFLNSKDKFNEESEHQVSRVEGTTTAPLLEEKTAE 478
GIFL+S D+F+E+SEHQVS VE + T PLL+EKT E
Sbjct: 272 GIFLHSVDRFDEDSEHQVSNVERSNTMPLLQEKTGE 165
>TC223794
Length = 457
Score = 40.8 bits (94), Expect = 0.001
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +3
Query: 354 SMYGFLALFAIGELLVFATQ 373
SMYGFLALF+IGELLVFATQ
Sbjct: 3 SMYGFLALFSIGELLVFATQ 62
>TC205503 UP|Q7XA50 (Q7XA50) Sorbitol-like transporter, complete
Length = 1928
Score = 38.9 bits (89), Expect = 0.005
Identities = 35/141 (24%), Positives = 64/141 (44%), Gaps = 4/141 (2%)
Frame = +1
Query: 91 IQGDFNLTNFQDGVLSSAFMVGLLIASPIFASLSKSVNPFRLIGVGLSVWTVATLCCGLS 150
I+ D +++ Q +L + LI S + S + IG+G +++ V + G
Sbjct: 340 IKRDLKVSDEQIEILLGIINLYSLIGSCLAGRTSDWIGRRYTIGLGGAIFLVGSTLMGF- 516
Query: 151 FNFWSITVC-RMLVGVGEASFISLAAPFIDDNAPASQKTVWLSIFYMCIPGGYAIGYV-- 207
+ +S +C R + G+G + +A + + +PAS + S + I GG +GY+
Sbjct: 517 YPHYSFLMCGRFVAGIGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINGGILLGYISN 696
Query: 208 YG-GVVGSHFGWRYAFWVEAV 227
YG + GWR V A+
Sbjct: 697 YGFSKLTLKVGWRMMLGVGAI 759
>TC213989 weakly similar to UP|Q94BZ1 (Q94BZ1) AT5g13750/MXE10_2
(Transporter-like protein), partial (46%)
Length = 820
Score = 36.2 bits (82), Expect = 0.034
Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 15/160 (9%)
Frame = +2
Query: 94 DFNLTNFQD------GVLSSAFMVGLLIASPIFASLSKSVNPFRLIGVGLSVWTVATLCC 147
DFN+ + G + SAFM G + S ++ ++ +I +G+ V +
Sbjct: 248 DFNIAKTEADISSYAGYVGSAFMFGRCLTSVMWGIVADRYGRKPVIVIGIIVVVIFNTLF 427
Query: 148 GLSFNFWSITVCRMLVGVGEASFISLAAP---FIDDNAPASQKTVWLSIFYMCIPGGYAI 204
GLS +FW + R L+G S L P + + + + LS G I
Sbjct: 428 GLSTSFWMAVIMRFLLG----SLNGLLGPVKAYATELFREEHQALGLSTVSAAWGVGLII 595
Query: 205 GYVYGGVVGS------HFGWRYAFWVEAVLMLPFAILGFV 238
G GG + H + +FW + LP I+ V
Sbjct: 596 GPALGGYLAQPVEKYPHIFSKDSFWDKFPYFLPNFIISAV 715
>TC203723 similar to UP|Q9ZWQ4 (Q9ZWQ4) UDP-glycose:flavonoid
glycosyltransferase (Fragment), partial (52%)
Length = 673
Score = 34.7 bits (78), Expect = 0.098
Identities = 17/44 (38%), Positives = 24/44 (53%)
Frame = -2
Query: 9 PKPATTTSSSSTPNPVPSSVEPNMLPKSTMIPATSWFTPKRLLA 52
P P++T S S T P SV P + P + + + W +PK LLA
Sbjct: 141 PTPSSTRSESQTLPPSHDSVSPPVGPSPSPLSPSPWSSPKTLLA 10
>CF805717
Length = 502
Score = 34.7 bits (78), Expect = 0.098
Identities = 20/77 (25%), Positives = 36/77 (45%), Gaps = 6/77 (7%)
Frame = +2
Query: 94 DFNLTNFQD------GVLSSAFMVGLLIASPIFASLSKSVNPFRLIGVGLSVWTVATLCC 147
DFN+ + G + S+FM+G + S ++ ++ +I +G+ +
Sbjct: 206 DFNIAKTEADISSYAGYVGSSFMLGRCLTSVLWGIVADRYGRKPVIVMGIIAVVIFNTLF 385
Query: 148 GLSFNFWSITVCRMLVG 164
GLS NFW + R L+G
Sbjct: 386 GLSTNFWMAVIMRFLLG 436
>TC211029 similar to UP|Q96VI4 (Q96VI4) Protease 1, partial (3%)
Length = 858
Score = 33.5 bits (75), Expect = 0.22
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +1
Query: 5 SEDEPKPATTTSSSSTPNPVPSSVEPNMLPKSTMIPATS 43
S +P P TTTS+S+ NP P S+ P P S+ +P TS
Sbjct: 382 SSSQP-PNTTTSTSTNTNPTPPSLAPT--PSSSSLPPTS 489
>TC209911 weakly similar to UP|Q94BZ1 (Q94BZ1) AT5g13750/MXE10_2
(Transporter-like protein), partial (44%)
Length = 925
Score = 32.7 bits (73), Expect = 0.37
Identities = 17/77 (22%), Positives = 37/77 (47%), Gaps = 6/77 (7%)
Frame = +1
Query: 94 DFNLTNFQD------GVLSSAFMVGLLIASPIFASLSKSVNPFRLIGVGLSVWTVATLCC 147
DFN+ ++ G + SAFM+G + S ++ ++ ++ + + + +
Sbjct: 202 DFNIAEGEEDISAYAGYIRSAFMLGRCLTSMLWGMIADRYGRKPVVIISVISVVIFNILF 381
Query: 148 GLSFNFWSITVCRMLVG 164
GLS +FW + R+ +G
Sbjct: 382 GLSTSFWMAVITRLFLG 432
>BM526012
Length = 433
Score = 32.0 bits (71), Expect = 0.63
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 5 SEDEPKPATTT-SSSSTPNPVPSSVEPNMLPKSTMIPATS 43
S PKP+TT S NP PS E N PK+T IP++S
Sbjct: 86 STQSPKPSTTPFRSPKHANPKPSQTE-NSKPKATWIPSSS 202
>TC228611 weakly similar to GB|CAA72487.1|1890317|ATP26A peroxidase ATP26a
{Arabidopsis thaliana;} , partial (49%)
Length = 731
Score = 31.6 bits (70), Expect = 0.83
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 2 AQKSEDEPKPATTTSSSSTPNPVPSSVEPNMLPKSTMIP 40
A + P PAT ++SSS P P SS P P T P
Sbjct: 282 ATPTSTSPSPATPSTSSSAPRPPLSSPAPTPSPAPTFSP 398
>TC225096 similar to UP|Q9M6R6 (Q9M6R6) RNA helicase, partial (9%)
Length = 487
Score = 31.6 bits (70), Expect = 0.83
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = +2
Query: 9 PKPATTTSSSSTPNPVPSSVEPNMLPKSTMI 39
P P T ++ T P P+S PN+LP+ T +
Sbjct: 242 PCPPLTATTMGTTRPAPTSSNPNLLPEKTTV 334
>BQ630440 weakly similar to PIR|T12079|T120 non-specific lipid transfer
protein LTP-24 drought and ABA induced - kidney bean,
partial (50%)
Length = 410
Score = 31.6 bits (70), Expect = 0.83
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = +2
Query: 9 PKPATTTSSSSTPNPVPSSVEPNMLPKSTMI 39
P P T ++ T P P+S PN+LP+ T +
Sbjct: 59 PCPPLTATTMGTTRPAPTSSNPNLLPEKTTV 151
>TC206893 similar to UP|Q70I39 (Q70I39) Coatomer alpha subunit-like protein,
partial (47%)
Length = 2113
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/32 (46%), Positives = 19/32 (58%)
Frame = -2
Query: 1 MAQKSEDEPKPATTTSSSSTPNPVPSSVEPNM 32
M+ S P A+ +SSS+TP PV SS NM
Sbjct: 642 MSSSSPQSPSAASYSSSSATPRPVLSSTPSNM 547
>TC211828 similar to UP|RPIA_ARATH (Q9ZU38) Probable-ribose 5-phosphate
isomerase (Phosphoriboisomerase) , partial (47%)
Length = 729
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/46 (32%), Positives = 26/46 (55%), Gaps = 4/46 (8%)
Frame = +2
Query: 2 AQKSEDEPKPATTTSSSSTPNPV----PSSVEPNMLPKSTMIPATS 43
+ +S PKP T S S++P+P+ P S+ P+ P ++ +TS
Sbjct: 509 SSESPPPPKPTTRPSPSASPSPISTPTPPSISPSTAPTRSIPSSTS 646
>TC224144 homologue to UP|Q8S564 (Q8S564) 4-coumarate:coenzyme A ligase ,
partial (38%)
Length = 783
Score = 30.8 bits (68), Expect = 1.4
Identities = 25/94 (26%), Positives = 45/94 (47%)
Frame = -1
Query: 117 SPIFASLSKSVNPFRLIGVGLSVWTVATLCCGLSFNFWSITVCRMLVGVGEASFISLAAP 176
SPI +SLS S+NP + S+ V ++ G SF + +T ++ +
Sbjct: 630 SPIKSSLSSSMNPISPVCTHPSLSIVLSVASG-SFRYPFMTFAPLMQISPDL-------- 478
Query: 177 FIDDNAPASQKTVWLSIFYMCIPGGYAIGYVYGG 210
F+ +P S T+++S F +P +A G ++ G
Sbjct: 477 FLGSESPVSVSTIFISAFLTTVP--HAPGLIFEG 382
>TC215110 similar to UP|Q9SKU1 (Q9SKU1) Expressed protein
(At2g20760/F5H14.27), partial (47%)
Length = 1225
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/41 (36%), Positives = 19/41 (45%)
Frame = +3
Query: 9 PKPATTTSSSSTPNPVPSSVEPNMLPKSTMIPATSWFTPKR 49
P P+TTT+S P P PS P P + TP+R
Sbjct: 96 PSPSTTTTSPPPPPPTPSLATPTSPPSPPTTSPSITPTPRR 218
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,906,255
Number of Sequences: 63676
Number of extensions: 376575
Number of successful extensions: 4098
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 3840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4062
length of query: 484
length of database: 12,639,632
effective HSP length: 101
effective length of query: 383
effective length of database: 6,208,356
effective search space: 2377800348
effective search space used: 2377800348
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)
Medicago: description of AC124214.6