BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC123899.6 + phase: 0 /pseudo
(513 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226130 homologue to UP|Q9ZS12 (Q9ZS12) RNA helicase, partial (... 735 0.0
TC227551 homologue to UP|O65879 (O65879) Translation initiation ... 217 1e-56
TC226496 homologue to UP|Q93VJ8 (Q93VJ8) AT5g11200/F2I11_90 (AT5... 199 2e-51
TC206333 homologue to UP|IF4V_TOBAC (Q40465) Eukaryotic initiati... 198 4e-51
TC226127 similar to GB|AAK93087.1|15291637|AY051663 LD21247p {Dr... 157 3e-50
TC205570 homologue to UP|Q93VJ8 (Q93VJ8) AT5g11200/F2I11_90 (AT5... 194 8e-50
TC224636 homologue to UP|Q8H1A5 (Q8H1A5) DEAD box RNA helicase, ... 192 4e-49
TC224595 homologue to UP|IF4U_TOBAC (P41382) Eukaryotic initiati... 185 5e-47
TC226129 similar to UP|DDX6_HUMAN (P26196) Probable ATP-dependen... 157 5e-46
TC224718 homologue to UP|Q8H1A5 (Q8H1A5) DEAD box RNA helicase, ... 162 3e-40
TC224638 homologue to UP|IF47_TOBAC (Q40470) Eukaryotic initiati... 155 3e-38
TC226128 homologue to UP|Q9ZS12 (Q9ZS12) RNA helicase, partial (... 134 1e-31
TC216873 similar to UP|Q9SCQ0 (Q9SCQ0) RNA helicase-like protein... 134 1e-31
TC216872 similar to UP|Q9SCQ0 (Q9SCQ0) RNA helicase-like protein... 69 2e-26
TC211174 weakly similar to UP|DDX4_MOUSE (Q61496) DEAD-box prote... 116 3e-26
TC229568 similar to UP|Q9FFQ1 (Q9FFQ1) RNA helicase, partial (91%) 106 3e-23
BE660362 similar to GP|8489871|gb| DEAD box protein P68 {Pisum s... 84 4e-21
AW705562 96 5e-20
TC220021 similar to UP|Q8LPE9 (Q8LPE9) At5g26743, partial (41%) 91 9e-19
TC232029 similar to GB|AAM47372.1|21360513|AY113064 AT3g06980/F1... 90 3e-18
>TC226130 homologue to UP|Q9ZS12 (Q9ZS12) RNA helicase, partial (88%)
Length = 2120
Score = 735 bits (1897), Expect = 0.0
Identities = 399/522 (76%), Positives = 420/522 (80%), Gaps = 10/522 (1%)
Frame = +2
Query: 2 NNNNRGRYPPGIGLGRGGSGGGGGGLTSNSNTG-----FQQRPHHQYQQQQQYVQRHMMQ 56
+NNNR RYPPG+GLGRGG L+ N N FQ RP + QQQ QYVQRH++Q
Sbjct: 323 SNNNRARYPPGMGLGRGGFNPN---LSQNPNQNQNHHAFQARPPYHQQQQAQYVQRHLLQ 493
Query: 57 NQHQQHYQNQQQNQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEANDSSSQDW 116
Q QQQ QQQQQQQQWLRR D N V+EVEKTVQSEA DSSSQDW
Sbjct: 494 QQ-----------QQQQQQQQQQQQWLRR-------DANAVDEVEKTVQSEAVDSSSQDW 619
Query: 117 KARLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALT 176
KARLK+PPADTRY+TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALT
Sbjct: 620 KARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALT 799
Query: 177 GSDILARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQ 236
GSDILARAKNGTGKTAAF IPALEKIDQDNN+IQVVILVPTRELALQTSQVCKEL KHL+
Sbjct: 800 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELAKHLK 979
Query: 237 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLS 296
IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVC+LKDC+MLVMDEADKLLS
Sbjct: 980 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCAMLVMDEADKLLS 1159
Query: 297 PEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFY 356
PEFQPSIEQLI LP TRQILMFSATFPVTVKDFKDRYLRKPY+INLMDELTLKGITQFY
Sbjct: 1160PEFQPSIEQLIHCLPTTRQILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQFY 1339
Query: 357 AFVEERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSC-----KD 411
AFVEERQKVHCLNTLFSK I+ + F S E ++ YSC K
Sbjct: 1340AFVEERQKVHCLNTLFSKL---QINQSIIFCNS--VNRVELLAKKITELGYSCFYIHAKM 1504
Query: 412 VARPP**SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRF 471
+ F + LFTRGIDIQAVNVVINFDFPKN+ETYLHRVGRSGRF
Sbjct: 1505LQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRF 1684
Query: 472 GHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 513
GHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP IDQAIYC
Sbjct: 1685GHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYC 1810
>TC227551 homologue to UP|O65879 (O65879) Translation initiation factor,
complete
Length = 1632
Score = 217 bits (552), Expect = 1e-56
Identities = 134/379 (35%), Positives = 210/379 (55%), Gaps = 5/379 (1%)
Frame = +2
Query: 131 TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGK 190
TE V A FE+ +K +LL GIY+ GFE+PS IQ+ ++ + G D++A+A++GTGK
Sbjct: 179 TEGVKAIAS--FEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGK 352
Query: 191 TAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKD 250
T+ ++ + +D +Q +IL PTRELA QT +V +G + IQ GG S+ +
Sbjct: 353 TSMIALTVCQVVDTSVREVQALILSPTRELASQTEKVILAIGDFINIQAHACVGGKSVGE 532
Query: 251 DIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFL 310
DI +L VH++ GTPGR+ D+ K+ + MLV+DE+D++LS F+ I + ++L
Sbjct: 533 DIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLVLDESDEMLSRGFKDQIYDVYRYL 712
Query: 311 PPTRQILMFSATFPVTVKDFKDRYLRKPY-IINLMDELTLKGITQFYAFVE-ERQKVHCL 368
PP Q+ + SAT P + + ++++ P I+ DELTL+GI QF+ VE E K L
Sbjct: 713 PPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTL 892
Query: 369 NTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSCKDVARPP**SFPRLPQWCM 428
L+ I + F + R F S P + ++
Sbjct: 893 CDLYDTLT---ITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRA 1063
Query: 429 QESRLYC---LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 485
+R+ ++ RG+D+Q V++VIN+D P N E Y+HR+GRSGRFG G+A+N + +D
Sbjct: 1064GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 1243
Query: 486 RFNLYRIEQELGTEIKQIP 504
L IEQ T+I ++P
Sbjct: 1244IKILRDIEQYYSTQIDEMP 1300
>TC226496 homologue to UP|Q93VJ8 (Q93VJ8) AT5g11200/F2I11_90
(AT5g11170/F2I11_60), partial (98%)
Length = 1674
Score = 199 bits (507), Expect = 2e-51
Identities = 143/440 (32%), Positives = 226/440 (50%), Gaps = 10/440 (2%)
Frame = +1
Query: 83 LRRNQLGGGTDTNVVEEVEKTVQSEANDSSSQDWKARLKLPPADTRYRTEDVTATKGNEF 142
L+RN++G DT EE E D ++ KA P + + + F
Sbjct: 37 LQRNRMGELKDTEAYEE-------ELIDYEEEEEKAPDSAKPVAESGK-KGYVGIHSSGF 192
Query: 143 EDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKI 202
D+ LK ELL I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F + L+++
Sbjct: 193 RDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQV 372
Query: 203 DQDNNIIQVVILVPTRELALQTSQVCKELGKHL-QIQVMVTTGGTSLK--DDIMRLYQPV 259
D + ++L TRELA Q + +L I+ V GG ++K ++++ P
Sbjct: 373 DPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECP- 549
Query: 260 HLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLL-SPEFQPSIEQLIQFLPPTRQILM 318
H++VGTPGRIL LA+ LK+ ++DE DK+L S + + ++++ + P +Q++M
Sbjct: 550 HIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMM 729
Query: 319 FSATFPVTVKDFKDRYLRKPYIINLMDE--LTLKGITQFYAFVEERQKVHCLNTLFSKAA 376
FSAT ++ ++++ P I + DE LTL G+ Q Y ++E +K LN L
Sbjct: 730 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQETEKNRKLNDLLDAL- 906
Query: 377 NKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSCKDVARPP**SFPRLPQWCMQESRLYC- 435
+ ++ F KS N F C A R + + R+
Sbjct: 907 --DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVA 1080
Query: 436 --LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLI-TYEDRFNLYRI 492
L RGIDI+ VN+VIN+D P +++TYLHRVGR+GRFG GLA+ + + D L ++
Sbjct: 1081TDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQV 1260
Query: 493 EQELGTEIKQIPPFIDQAIY 512
+ +IK++P ID + Y
Sbjct: 1261QSRFEVDIKELPEQIDTSTY 1320
>TC206333 homologue to UP|IF4V_TOBAC (Q40465) Eukaryotic initiation factor
4A-11 (eIF4A-11) (eIF-4A-11), partial (92%)
Length = 1625
Score = 198 bits (504), Expect = 4e-51
Identities = 132/414 (31%), Positives = 207/414 (49%), Gaps = 30/414 (7%)
Frame = +1
Query: 121 KLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDI 180
+LPP+ ++ A +G++F+ L+ LL GIY GFE+PS IQ+ I G D+
Sbjct: 115 ELPPSFPKFAIMAGLAPEGSQFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDV 294
Query: 181 LARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVM 240
+ +A++GTGKTA F L+++D Q ++L PTRELA Q +V + LG +L ++V
Sbjct: 295 IQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 474
Query: 241 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQ 300
V GGT +++D L VH++VGTPGR+ D+ + + M V+DEAD++LS F+
Sbjct: 475 VCVGGTIVREDQRILSSGVHVVVGTPGRVFDMLCRQSLRPDNIRMFVLDEADEMLSRGFK 654
Query: 301 PSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLR-----------------KPYIIN- 342
I + Q LPP Q+ +FSAT P + +++ K + +N
Sbjct: 655 DQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFFVNV 834
Query: 343 ---------LMDELTLKGITQFYAFVEERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TP 393
L D ITQ FV R+KV + L K ++ G
Sbjct: 835 DKEDWKLETLCDLYETLAITQSVIFVNTRRKV---DWLTDKMRSRDHTVSATHGDMD--- 996
Query: 394 C*ENH*TRVFMFLYSCKDVARPP**SFPRLPQWCMQESRLYC---LFTRGIDIQAVNVVI 450
+ +D+ + ++ SR+ L RGID+Q V++VI
Sbjct: 997 -------------QNTRDII---------MREFRSGSSRVLITTDLLARGIDVQQVSLVI 1110
Query: 451 NFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 504
N+D P E YLHR+GRSGRFG G+A+N +T +D L+ I++ +I+++P
Sbjct: 1111NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTGDDERMLFDIQKFYNVQIEELP 1272
>TC226127 similar to GB|AAK93087.1|15291637|AY051663 LD21247p {Drosophila
melanogaster;} , partial (29%)
Length = 812
Score = 157 bits (397), Expect(2) = 3e-50
Identities = 76/78 (97%), Positives = 77/78 (98%)
Frame = +2
Query: 436 LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE 495
LFTRGIDIQAVNVVINFDFPKN+ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE
Sbjct: 170 LFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE 349
Query: 496 LGTEIKQIPPFIDQAIYC 513
LGTEIKQIPP IDQAIYC
Sbjct: 350 LGTEIKQIPPQIDQAIYC 403
Score = 60.1 bits (144), Expect(2) = 3e-50
Identities = 31/55 (56%), Positives = 36/55 (65%)
Frame = +1
Query: 380 IHHLLQFGKSS*TPC*ENH*TRVFMFLYSCKDVARPP**SFPRLPQWCMQESRLY 434
+ H QF +S T ENH T +FMFL+SCKDVA P * S LPQWCM +S LY
Sbjct: 1 VXHXXQFSESXXTSXXENHGTWLFMFLHSCKDVAGPS*QSVS*LPQWCMSKSCLY 165
>TC205570 homologue to UP|Q93VJ8 (Q93VJ8) AT5g11200/F2I11_90
(AT5g11170/F2I11_60), partial (98%)
Length = 1745
Score = 194 bits (493), Expect = 8e-50
Identities = 134/396 (33%), Positives = 206/396 (51%), Gaps = 25/396 (6%)
Frame = +1
Query: 142 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEK 201
F D+ LK ELL I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F + L++
Sbjct: 262 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 441
Query: 202 IDQDNNIIQVVILVPTRELALQTSQVCKELGKHL-QIQVMVTTGGTSLK--DDIMRLYQP 258
ID + ++L TRELA Q + +L ++V V GG ++K D+++ P
Sbjct: 442 IDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECP 621
Query: 259 VHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLL-SPEFQPSIEQLIQFLPPTRQIL 317
H++VGTPGRIL L + LK+ ++DE DK+L S + + ++ + + P +Q++
Sbjct: 622 -HIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVM 798
Query: 318 MFSATFPVTVKDFKDRYLRKPYIINLMDE--LTLKGITQFYAFVEERQKVHCLNTLFSKA 375
MFSAT ++ ++++ P I + DE LTL G+ Q Y ++E +K LN L
Sbjct: 799 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDAL 978
Query: 376 ANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSCKDVARPP**SFPR--LPQWCMQESRL 433
+ ++ F KS + + L C +FP + QE RL
Sbjct: 979 ---DFNQVVIFVKS------VSRAAELDKLLVEC---------NFPSICIHSGMSQEERL 1104
Query: 434 ----------------YCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLA 477
L RGIDI+ VN+VIN+D P +++TYLHRVGR+GRFG GLA
Sbjct: 1105KRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA 1284
Query: 478 VNLITYE-DRFNLYRIEQELGTEIKQIPPFIDQAIY 512
+ ++ D L ++ +IKQ+P ID + Y
Sbjct: 1285ITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTY 1392
>TC224636 homologue to UP|Q8H1A5 (Q8H1A5) DEAD box RNA helicase, complete
Length = 1556
Score = 192 bits (487), Expect = 4e-49
Identities = 126/395 (31%), Positives = 196/395 (48%), Gaps = 30/395 (7%)
Frame = +2
Query: 140 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPAL 199
+ F+ L+ LL GIY GFE+PS IQ+ I G D++ +A++GTGKTA F L
Sbjct: 212 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 391
Query: 200 EKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPV 259
+++D Q ++L PTRELA Q +V + LG +L ++V GGTS+++D L V
Sbjct: 392 QQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGV 571
Query: 260 HLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMF 319
H++VGTPGR+ D+ ++ + M V+DEAD++LS F+ I + Q LP Q+ +F
Sbjct: 572 HVVVGTPGRVFDMLRRQSLLPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVF 751
Query: 320 SATFPVTVKDFKDRYLR-----------------KPYIIN----------LMDELTLKGI 352
SAT P + +++ K + +N L D I
Sbjct: 752 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAI 931
Query: 353 TQFYAFVEERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSCKDV 412
TQ FV R+KV + L K ++ G + +D+
Sbjct: 932 TQSVIFVNTRRKV---DWLTDKMRSRDHTVSATHGDMD----------------QNTRDI 1054
Query: 413 ARPP**SFPRLPQWCMQESRLYC---LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSG 469
+ ++ SR+ L RGID+Q V++VINFD P E YLHR+GRSG
Sbjct: 1055I---------MREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSG 1207
Query: 470 RFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 504
RFG G+A+N +T +D L+ I++ +++++P
Sbjct: 1208RFGRKGVAINFVTKDDEKMLFDIQKFYNVQVEELP 1312
>TC224595 homologue to UP|IF4U_TOBAC (P41382) Eukaryotic initiation factor
4A-10 (eIF4A-10) (eIF-4A-10), complete
Length = 1515
Score = 185 bits (469), Expect = 5e-47
Identities = 125/387 (32%), Positives = 198/387 (50%), Gaps = 22/387 (5%)
Frame = +1
Query: 140 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPAL 199
+ F+ L+ LL GIY GFERPS IQ+ I G D++ +A++GTGKTA F L
Sbjct: 193 DSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 372
Query: 200 EKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPV 259
+++D Q ++L PTRELA Q +V + LG +L ++V GGTS+++D L V
Sbjct: 373 QQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGV 552
Query: 260 HLLVGTPGRILDLAKKGVCVLKDC-SMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILM 318
H +VGTPGR+ D+ ++ + DC M V+DEAD++LS F+ I + Q LP Q+ +
Sbjct: 553 HTVVGTPGRVFDMLRRQ-SLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 729
Query: 319 FSATFPVTVKDFKDRYLR-----------------KPYIINL-MDELTLKGITQFYAFVE 360
FSAT P + +++ K + +N+ +E L+ + Y +
Sbjct: 730 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 909
Query: 361 ERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSCKDVARPP**SF 420
Q V +NT + + L +S+ H + +D+
Sbjct: 910 ITQSVIFVNT------RRKVDWLTDKMRSNDHTVSATHGDMD----QNTRDII------- 1038
Query: 421 PRLPQWCMQESRLYC---LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLA 477
+ ++ SR+ L RGID+Q V++VIN+D P E YLHR+GRSGRFG G+A
Sbjct: 1039--MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA 1212
Query: 478 VNLITYEDRFNLYRIEQELGTEIKQIP 504
+N +T +D L I++ ++++P
Sbjct: 1213INFVTTDDSRMLSDIQKFYNVTVEELP 1293
>TC226129 similar to UP|DDX6_HUMAN (P26196) Probable ATP-dependent RNA
helicase p54 (Oncogene RCK) (DEAD-box protein 6),
partial (22%)
Length = 1035
Score = 157 bits (397), Expect(2) = 5e-46
Identities = 76/78 (97%), Positives = 77/78 (98%)
Frame = +2
Query: 436 LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE 495
LFTRGIDIQAVNVVINFDFPKN+ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE
Sbjct: 104 LFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE 283
Query: 496 LGTEIKQIPPFIDQAIYC 513
LGTEIKQIPP IDQAIYC
Sbjct: 284 LGTEIKQIPPQIDQAIYC 337
Score = 45.8 bits (107), Expect(2) = 5e-46
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = +1
Query: 402 VFMFLYSCKDVARPP**SFPRLPQWCMQESRLY 434
VFMFL+SCKDVARP * S LPQW M +S LY
Sbjct: 1 VFMFLHSCKDVARPS*QSVS*LPQWRMSKSCLY 99
>TC224718 homologue to UP|Q8H1A5 (Q8H1A5) DEAD box RNA helicase, complete
Length = 1624
Score = 162 bits (411), Expect = 3e-40
Identities = 94/239 (39%), Positives = 140/239 (58%), Gaps = 2/239 (0%)
Frame = +3
Query: 140 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPAL 199
+ F+ L+ LL GIY GFE+PS IQ+ I G D++ +A++GTGKTA F L
Sbjct: 264 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 443
Query: 200 EKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPV 259
+++D Q ++L PTRELA Q +V + LG++L ++V GGTS+++D L V
Sbjct: 444 QQLDYSVTECQALVLAPTRELAQQIEKVMRALGEYLGVKVHACVGGTSVREDQRILSSGV 623
Query: 260 HLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMF 319
H++VGTPGR+ D+ ++ M V+DEAD++LS F+ I + Q LP Q+ +F
Sbjct: 624 HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVF 803
Query: 320 SATFPVTVKDFKDRYLRKPY-IINLMDELTLKGITQFYAFVE-ERQKVHCLNTLFSKAA 376
SAT P + +++ KP I+ DELTL+GI QF+ VE E K+ L L+ A
Sbjct: 804 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLDTLCDLYETLA 980
Score = 75.5 bits (184), Expect = 5e-14
Identities = 33/69 (47%), Positives = 48/69 (68%)
Frame = +3
Query: 436 LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE 495
L RGID+Q V++VIN+D P E YLHR+GRSGRFG G+A+N +T +D L+ I++
Sbjct: 1158 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDEKMLFDIQKF 1337
Query: 496 LGTEIKQIP 504
I+++P
Sbjct: 1338 YNVIIEELP 1364
>TC224638 homologue to UP|IF47_TOBAC (Q40470) Eukaryotic initiation factor
4A-7 (eIF4A-7) (eIF-4A-7), partial (65%)
Length = 961
Score = 155 bits (393), Expect = 3e-38
Identities = 88/223 (39%), Positives = 130/223 (57%), Gaps = 1/223 (0%)
Frame = +3
Query: 140 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPAL 199
+ F+ L+ LL GIY GFERPS IQ+ I G D++ +A++GTGKTA F L
Sbjct: 267 DSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 446
Query: 200 EKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPV 259
+++D Q ++L PTRELA Q +V + LG +L ++V GGTS+++D L V
Sbjct: 447 QQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGV 626
Query: 260 HLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMF 319
H +VGTPGR+ D+ ++ M V+DEAD++LS + I + Q LP Q+ +F
Sbjct: 627 HTVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGLKDQIYDIFQLLPGQIQVGVF 806
Query: 320 SATFPVTVKDFKDRYLRKPY-IINLMDELTLKGITQFYAFVEE 361
SAT P + +++ KP I+ DELTL+GI Q Y V++
Sbjct: 807 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQVYVNVDK 935
>TC226128 homologue to UP|Q9ZS12 (Q9ZS12) RNA helicase, partial (14%)
Length = 468
Score = 134 bits (337), Expect = 1e-31
Identities = 65/69 (94%), Positives = 66/69 (95%)
Frame = +3
Query: 445 AVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 504
AVNVVINFDFPKN+ETYLHRVGRSGR GHLGLA NLITYEDRFNLYRIEQELGTEIKQIP
Sbjct: 3 AVNVVINFDFPKNAETYLHRVGRSGRCGHLGLAGNLITYEDRFNLYRIEQELGTEIKQIP 182
Query: 505 PFIDQAIYC 513
P IDQAIYC
Sbjct: 183 PQIDQAIYC 209
>TC216873 similar to UP|Q9SCQ0 (Q9SCQ0) RNA helicase-like protein
(At3g53110), partial (67%)
Length = 1840
Score = 134 bits (337), Expect = 1e-31
Identities = 125/413 (30%), Positives = 188/413 (45%), Gaps = 42/413 (10%)
Frame = +2
Query: 133 DVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALT--GSDILARAKNGTG 189
D T FED L ELL G+Y E FE+PS IQ S+P+ L+ D++A+A NG+G
Sbjct: 308 DTPYTSAARFEDLSLSPELLKGLYVEMKFEKPSKIQAISLPMILSPPNRDLIAQAHNGSG 487
Query: 190 KTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLK 249
KT F + L ++D Q + + PTRELA+Q +V + +GK+ I L
Sbjct: 488 KTTCFVLGMLSRVDPKVQAPQALCICPTRELAIQNIEVLRRMGKYTGIASECLV---PLD 658
Query: 250 DDIMRLYQ--PV--HLLVGTPGRI---LDLAKKGVCVLKDCSMLVMDEADKLLSPE-FQP 301
D + + + P+ +++GTPG + + K G L+ +LV DEAD++L+ + F+
Sbjct: 659 RDAVHVSKRAPIMAQVVIGTPGTVKKFISFKKLGTTRLR---ILVFDEADQMLAEDGFRD 829
Query: 302 SIEQLIQFLPPTR---QILMFSATFPVTVKDFKDRYLR------------------KPYI 340
++++ + Q+L+FSATF TVK+F R +R K Y
Sbjct: 830 DSLRIMKDIEKENSKCQVLLFSATFNDTVKNFVSRTVRMDHNKLFVKKEELSLDAVKQYK 1009
Query: 341 INLMDELTLKGITQFYAFVEERQKVHCLNTLFSKAANKPIHH-LLQFGKSS*TPC*ENH* 399
+ DEL + + Y F + + SK + H L++ G
Sbjct: 1010VYCPDELAKIDVVKDYIFEIGENVGQTIIFVRSKITARLTHEALVKLGYE---------- 1159
Query: 400 TRVFMFLYSCKDVARPP**SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPK--- 456
V S + R Q + RG D Q VN+VIN+D PK
Sbjct: 1160--VTSIQGSLSNEERDK--VVKEFKDGLTQVLISTDILARGFDQQQVNLVINYDLPKKYG 1327
Query: 457 -----NSETYLHRVGRSGRFGHLGLAVNLITYE-DRFNLYRIEQELGTEIKQI 503
+ E YLHRVGR+GRFG G NLI E D + +IE GT + ++
Sbjct: 1328VRDEPDYEVYLHRVGRAGRFGRKGAVFNLICGELDERLMSKIENHFGTRVTEV 1486
>TC216872 similar to UP|Q9SCQ0 (Q9SCQ0) RNA helicase-like protein
(At3g53110), partial (64%)
Length = 1702
Score = 69.3 bits (168), Expect(2) = 2e-26
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Frame = +3
Query: 133 DVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALTGS--DILARAKNGTG 189
D T FED L ELL G+Y E FE+PS IQ S+P+ L+ D++A+A NG+G
Sbjct: 303 DTPYTSAARFEDLSLSPELLKGLYVEMKFEKPSKIQAISLPMILSPPHRDLIAQAHNGSG 482
Query: 190 KTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGK 233
KT F + L ++D Q + + PTRELA+Q + + G+
Sbjct: 483 KTTCFVLGMLSRVDPKVQAPQALCVCPTRELAIQNVEELPQDGE 614
Score = 68.2 bits (165), Expect(2) = 2e-26
Identities = 76/277 (27%), Positives = 116/277 (41%), Gaps = 34/277 (12%)
Frame = +1
Query: 261 LLVGTPGRI---LDLAKKGVCVLKDCSMLVMDEADKLLSPE-FQPSIEQLIQFLPPTR-- 314
+++GTPG I + K G LK +LV DEAD++L+ E F+ ++++ +
Sbjct: 703 VVIGTPGTIKKFISFKKLGTSRLK---ILVFDEADQMLAQEGFRDDSLKIMKDIEKDNKK 873
Query: 315 -QILMFSATFPVTVKDFKDRYLR------------------KPYIINLMDELTLKGITQF 355
Q+L+FSATF TVK+F R ++ K Y + DEL + +
Sbjct: 874 CQVLLFSATFNDTVKNFISRTVKMDHNKLFVKKEELSLDAVKQYKVYCPDELAKIDVIKD 1053
Query: 356 YAFVEERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSCKDVARP 415
Y F + + ++ + + +H L N V S + R
Sbjct: 1054YIFEIGENVGQTIIFMATRDSARLLHQALV-----------NLGYEVTSIQGSLSNEERD 1200
Query: 416 P**SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNS--------ETYLHRVGR 467
Q + RG D Q VN+VIN++ P E YLHRVGR
Sbjct: 1201K--VVKEFKDGLTQVLISTDILARGFDQQQVNLVINYNLPNKHSLRDEPDYEVYLHRVGR 1374
Query: 468 SGRFGHLGLAVNLITYE-DRFNLYRIEQELGTEIKQI 503
+GRFG G NLI E D + +IE GT + ++
Sbjct: 1375AGRFGRKGAVFNLICDENDERLMSKIENHFGTCVTEV 1485
>TC211174 weakly similar to UP|DDX4_MOUSE (Q61496) DEAD-box protein 4 (VASA
homolog) (Mvh), partial (6%)
Length = 676
Score = 116 bits (290), Expect = 3e-26
Identities = 79/183 (43%), Positives = 103/183 (56%), Gaps = 13/183 (7%)
Frame = +1
Query: 159 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKI--------DQDNNIIQ 210
G+ + + IQE S+PI L G D L +AK GTGK+ AF +PA+E + Q I
Sbjct: 124 GYVQMTRIQEASLPICLEGMDALVKAKTGTGKSVAFLLPAIETVLKAMSSNTSQRVPPIY 303
Query: 211 VVILVPTRELALQTSQVCKELGK-HLQIQVMVTTGGTSLKDDIMRL-YQPVHLLVGTPGR 268
V+IL PTRELA Q + V K L K H I V GG K D RL P +LV TPGR
Sbjct: 304 VLILCPTRELASQIAAVAKVLLKYHETIGVQTLVGGIRFKVDQKRLESDPCQILVATPGR 483
Query: 269 ILDLA--KKGVCV-LKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPV 325
+LD K G+ + L LV+DEAD LL F+ +E+++ LP +Q L+FSAT P
Sbjct: 484 LLDHIENKSGISLRLMGLRTLVLDEADHLLDLGFRKDVEKIVDCLPRQQQSLLFSATIPK 663
Query: 326 TVK 328
V+
Sbjct: 664 EVR 672
>TC229568 similar to UP|Q9FFQ1 (Q9FFQ1) RNA helicase, partial (91%)
Length = 1635
Score = 106 bits (264), Expect = 3e-23
Identities = 109/360 (30%), Positives = 167/360 (46%), Gaps = 32/360 (8%)
Frame = +3
Query: 181 LARAKNGTGKTAAFSIPALEKI------DQDNNI--IQVVILVPTRELALQTS-QVCKEL 231
L R + GKT AF +P++E + D+D+ I V+++ PTRELA Q + + K L
Sbjct: 210 LPRPRQAPGKTVAFLLPSIEVVAKSPPSDRDHRRPPISVLVICPTRELASQAAAEATKLL 389
Query: 232 GKHLQIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLAKKGVCV---LKDCSMLV 287
H I V V GGT L + R+ P +LV TPGR+ D + L +LV
Sbjct: 390 KYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHTENTAGFATRLMGVKVLV 569
Query: 288 MDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPY-IINLMDE 346
+DEAD LL F+ IE++I +P RQ LMFSAT P V+ LR+ + IN + E
Sbjct: 570 LDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQE 749
Query: 347 LTLKGITQFYAFVEERQKVHCLNTLFS--------KAANKPIHHLLQFGKSS*TPC*ENH 398
G + ++ V + V L+ FS A+ + +L F C
Sbjct: 750 ----GTEETHSQVRQTHLVAPLDKHFSLLYVLLKDHIADDVDYKVLVF-------CTTAM 896
Query: 399 *TRVFMFLYSCKDV------ARPP**SFPRLPQWCMQESRLYCLFT----RGIDIQAVNV 448
TR+ L ++ +R P R+ + + L + + RG+D V +
Sbjct: 897 VTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRRSKGLILVTSDVSARGVDYPDVTL 1076
Query: 449 VINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFID 508
VI P + E Y+HR+GR+GR G G + L+ + F L + ++L E + P +D
Sbjct: 1077VIQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEDFFLSTV-KDLPIEKAPVLPSVD 1253
Score = 43.9 bits (102), Expect = 2e-04
Identities = 17/42 (40%), Positives = 30/42 (70%)
Frame = +2
Query: 152 LMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAA 193
L G+ + G+E+ + +QE ++P+ L G D+LA+AK GT K ++
Sbjct: 122 LKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTXKNSS 247
>BE660362 similar to GP|8489871|gb| DEAD box protein P68 {Pisum sativum},
partial (36%)
Length = 726
Score = 84.3 bits (207), Expect(2) = 4e-21
Identities = 51/152 (33%), Positives = 84/152 (54%), Gaps = 6/152 (3%)
Frame = +2
Query: 142 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEK 201
F D L ++ I + RP+ IQ +++PIAL+G D+L A+ G+GKTAAF+IP ++
Sbjct: 59 FTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQH 238
Query: 202 IDQDNNIIQ-----VVILVPTRELALQTSQVCKELGKHLQ-IQVMVTTGGTSLKDDIMRL 255
+ I + ++L PTRELA Q + K + L+ ++ + GGT+++ L
Sbjct: 239 CLAQHPIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSEL 418
Query: 256 YQPVHLLVGTPGRILDLAKKGVCVLKDCSMLV 287
V + V TPGR +D ++G L S++V
Sbjct: 419 RAGVEIAVATPGRFIDHLQQGNTSLFRISLVV 514
Score = 35.4 bits (80), Expect(2) = 4e-21
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 288 MDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKP 338
+DEAD++L F+P I +++ L Q L+ +AT PV ++ L P
Sbjct: 514 LDEADRMLDMGFEPQIRXVMRNLXEKHQTLLVNATMPVENEELSKEXLAYP 666
>AW705562
Length = 204
Score = 95.5 bits (236), Expect = 5e-20
Identities = 48/68 (70%), Positives = 55/68 (80%)
Frame = +1
Query: 198 ALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQ 257
AL+K+DQDNN I VVILVPTR+L LQTS VCKELGKHL+I VM +TGGTSL D + LY
Sbjct: 1 ALKKLDQDNNAIHVVILVPTRKLPLQTSLVCKELGKHLKIHVMDSTGGTSLTYDRLILYH 180
Query: 258 PVHLLVGT 265
P H+L GT
Sbjct: 181 PAHVLCGT 204
>TC220021 similar to UP|Q8LPE9 (Q8LPE9) At5g26743, partial (41%)
Length = 935
Score = 91.3 bits (225), Expect = 9e-19
Identities = 51/135 (37%), Positives = 76/135 (55%)
Frame = +1
Query: 212 VILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 271
++L PTRELA Q + KE +L + GG S L + V ++VGTPGRI+D
Sbjct: 49 LVLAPTRELAKQVEKEIKESAPYLS--TVCVYGGVSYVTQQSALSRGVDVVVGTPGRIID 222
Query: 272 LAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFK 331
L L + LV+DEAD++L+ F+ +E +++ LP RQ ++FSAT P VK
Sbjct: 223 LINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEMILENLPSQRQSMLFSATMPSWVKKLA 402
Query: 332 DRYLRKPYIINLMDE 346
+YL P I+L+ +
Sbjct: 403 RKYLNNPLTIDLVGD 447
Score = 53.1 bits (126), Expect = 3e-07
Identities = 23/63 (36%), Positives = 42/63 (66%)
Frame = +1
Query: 439 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGT 498
RG+DI V+++I+++ P + ET++HR GR+GR G G A+ L T R + +E+++G
Sbjct: 733 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGNAILLYTSSQRRTVRSLERDVGC 912
Query: 499 EIK 501
+ +
Sbjct: 913 KFE 921
>TC232029 similar to GB|AAM47372.1|21360513|AY113064 AT3g06980/F17A9_13
{Arabidopsis thaliana;} , partial (26%)
Length = 700
Score = 89.7 bits (221), Expect = 3e-18
Identities = 65/219 (29%), Positives = 103/219 (46%), Gaps = 14/219 (6%)
Frame = +1
Query: 123 PPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILA 182
PPA ++ D F++ ++ + + F RPS +Q + ++G +
Sbjct: 13 PPAQSK-SVSDTKFFSLKSFKEIGCSEYMIESLQKLLFSRPSHVQAMAFTPVISGKTCVI 189
Query: 183 RAKNGTGKTAAFSIPALEKIDQDN--NII----------QVVILVPTRELALQTSQVCKE 230
++G+GKT A+ P ++++ Q II +V++L PT ELA Q C+
Sbjct: 190 ADQSGSGKTFAYLAPIIQRLRQQELEGIISKSSSQAPSPRVLVLAPTAELASQVLDNCRS 369
Query: 231 LGKH-LQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMD 289
L K + + MV TGG K + L Q V +L+ TPGR L L +G L + V+D
Sbjct: 370 LSKSGVPFKSMVVTGGFRQKTQLENLQQGVDVLIATPGRFLFLINQGFLHLTNLRCAVLD 549
Query: 290 EADKLLSPE-FQPSIEQLIQFLPPTRQILMFSATFPVTV 327
E D L E F+ +++ LI P Q L +AT P V
Sbjct: 550 EVDILFGDEDFEVALQSLINSSPVDTQYLFVTATLPKNV 666
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.140 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,555,017
Number of Sequences: 63676
Number of extensions: 279239
Number of successful extensions: 8056
Number of sequences better than 10.0: 317
Number of HSP's better than 10.0 without gapping: 4186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5959
length of query: 513
length of database: 12,639,632
effective HSP length: 101
effective length of query: 412
effective length of database: 6,208,356
effective search space: 2557842672
effective search space used: 2557842672
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC123899.6