BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC123898.6 - phase: 0 /pseudo
(478 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203641 weakly similar to UP|Q8IMS9 (Q8IMS9) CG31439-PA, partia... 45 7e-05
TC206524 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 42 6e-04
TC216269 similar to UP|E6_GOSHI (Q01197) Protein E6, partial (17%) 40 0.002
TC206525 weakly similar to UP|Q41042 (Q41042) Pisum sativum L. (... 38 0.009
TC229435 weakly similar to UP|Q14883 (Q14883) Intestinal mucin (... 38 0.009
TC231868 similar to UP|Q93424 (Q93424) C. elegans GRL-23 protein... 38 0.011
TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding ... 37 0.015
TC228858 weakly similar to UP|Q9W0H4 (Q9W0H4) CG2469-PA (Cg2469-... 37 0.019
TC234725 similar to UP|RFX1_HUMAN (P22670) MHC class II regulato... 37 0.019
TC203463 weakly similar to UP|Q8IMS9 (Q8IMS9) CG31439-PA, partia... 37 0.019
TC217547 weakly similar to UP|Q61869 (Q61869) Keratin 2 epidermi... 37 0.025
TC210023 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 ... 37 0.025
TC219773 similar to UP|Q9VQA9 (Q9VQA9) CG15388-PA, partial (3%) 36 0.043
TC204100 homologue to UP|Q93WA5 (Q93WA5) Ribosomal protein L32, ... 36 0.043
TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, co... 36 0.043
CA939026 36 0.043
TC226468 weakly similar to UP|O65450 (O65450) Glycine-rich prote... 36 0.043
TC214476 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 35 0.056
BF071504 35 0.056
TC223010 weakly similar to UP|Q08196 (Q08196) Cysteine-rich exte... 35 0.074
>TC203641 weakly similar to UP|Q8IMS9 (Q8IMS9) CG31439-PA, partial (17%)
Length = 923
Score = 45.1 bits (105), Expect = 7e-05
Identities = 26/40 (65%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Frame = +1
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTT---PTTG 69
T A PTTTT TT T TT T TT TTTT TTT PTTG
Sbjct: 517 TTATPTTTTPTTGTPPTTLTPTTPTTTTPGTTTGTSPTTG 636
Score = 33.5 bits (75), Expect = 0.21
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1
Query: 35 APPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
+P T TT T TTT +T TT T TTPTT
Sbjct: 493 SPSNAGTGTTATPTTTTPTTGTPPTTLTPTTPTT 594
Score = 33.1 bits (74), Expect = 0.28
Identities = 23/41 (56%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +1
Query: 33 TKAPPTT---TTETTTT-ATTTETSTTETTTTKTTTTPTTG 69
T PPTT TT TTTT TTT TS T T T T T T G
Sbjct: 550 TGTPPTTLTPTTPTTTTPGTTTGTSPTTGTGTGTGTGTTIG 672
Score = 32.3 bits (72), Expect = 0.48
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 37 PTTTTETTTTATTTETSTTETTTTKTTTTPTTG 69
P T T ++ + T TT T TTTTPTTG
Sbjct: 457 PPTAASTCVYPSSPSNAGTGTTATPTTTTPTTG 555
Score = 32.0 bits (71), Expect = 0.62
Identities = 17/32 (53%), Positives = 18/32 (56%)
Frame = +1
Query: 32 LTKAPPTTTTETTTTATTTETSTTETTTTKTT 63
LT PTTTT TTT T+ T T T T TT
Sbjct: 571 LTPTTPTTTTPGTTTGTSPTTGTGTGTGTGTT 666
>TC206524 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (6%)
Length = 464
Score = 42.0 bits (97), Expect = 6e-04
Identities = 23/39 (58%), Positives = 31/39 (78%), Gaps = 3/39 (7%)
Frame = -1
Query: 33 TKAPPTTTTETTTTATTTE-TSTTETT--TTKTTTTPTT 68
TK+ TT+T++TTT T+T+ T+TT +T TT TTTTPTT
Sbjct: 176 TKSATTTSTKSTTTTTSTKSTATTSSTKSTTTTTTTPTT 60
Score = 40.8 bits (94), Expect = 0.001
Identities = 24/37 (64%), Positives = 27/37 (72%), Gaps = 5/37 (13%)
Frame = -1
Query: 38 TTTTETTTTATTTET-STTETTTTKTT----TTPTTG 69
TTTT T +TATT+ T STT TTTT TT TTP+TG
Sbjct: 140 TTTTSTKSTATTSSTKSTTTTTTTPTTKSTATTPSTG 30
Score = 32.7 bits (73), Expect = 0.37
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = -1
Query: 33 TKAPPTTT-TETTTTATTTETSTTETTTTKTTTTPTT 68
TK+ TT+ T++TTT TTT T T T TT +T T TT
Sbjct: 125 TKSTATTSSTKSTTTTTTTPT-TKSTATTPSTGTSTT 18
Score = 32.0 bits (71), Expect = 0.62
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 29 RLKLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
R K+ T +T T++T + T TST TTTT +T + T
Sbjct: 227 RSKVGSISTTPSTATSSTKSATTTSTKSTTTTTSTKSTAT 108
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = -1
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTT 65
T + +TTT T TT TT T+TT +T T TT T
Sbjct: 107 TSSTKSTTTTT-TTPTTKSTATTPSTGTSTTRT 12
>TC216269 similar to UP|E6_GOSHI (Q01197) Protein E6, partial (17%)
Length = 1139
Score = 40.0 bits (92), Expect = 0.002
Identities = 27/73 (36%), Positives = 36/73 (48%), Gaps = 3/73 (4%)
Frame = +2
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTT---TTPTTGEEDQL*ILGFVMSTTLMMII 89
T+ TTTT TT+ T T+T TTTT T TT L I G +++TT M +
Sbjct: 446 TQKKNTTTTTTTSITTPIRTTTRSTTTTMLPMAYTPTTTTTITMLTITGTILTTTTMPLT 625
Query: 90 RVLMRRKS*SMMG 102
++R K * G
Sbjct: 626 GTMVRGKE*VTQG 664
>TC206525 weakly similar to UP|Q41042 (Q41042) Pisum sativum L. (clone
na-481-5), partial (20%)
Length = 752
Score = 38.1 bits (87), Expect = 0.009
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = -2
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTTPTT 68
TTTT T +TATTT T +T TT + +TT TT
Sbjct: 427 TTTTSTKSTATTTSTKSTATTPSTKSTTATT 335
Score = 37.0 bits (84), Expect = 0.019
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 11/47 (23%)
Frame = -2
Query: 33 TKAPPTTTTETTTTATTTE-----------TSTTETTTTKTTTTPTT 68
TK+ TT+T++T T T+T+ T+TT +T + TTTTPTT
Sbjct: 436 TKSTTTTSTKSTATTTSTKSTATTPSTKSTTATTPSTKSTTTTTPTT 296
Score = 37.0 bits (84), Expect = 0.019
Identities = 18/34 (52%), Positives = 24/34 (69%), Gaps = 2/34 (5%)
Frame = -2
Query: 37 PTTTTETTTTATTTETSTTETTTT--KTTTTPTT 68
P+TTT +T + TTT T +T TTT+ T TTP+T
Sbjct: 457 PSTTTPSTKSTTTTSTKSTATTTSTKSTATTPST 356
Score = 36.6 bits (83), Expect = 0.025
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = -2
Query: 33 TKAPPTTTTETTTTATTTET-STTETTTTKTTTTPTT 68
TK+ TT + +TTATT T STT TT T +T+TP T
Sbjct: 385 TKSTATTPSTKSTTATTPSTKSTTTTTPTTSTSTPRT 275
Score = 35.4 bits (80), Expect = 0.056
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -2
Query: 29 RLKLTKAPPTTTTETTTTATTTETSTTET-TTTKTTTTPTT 68
R K+ PT +T T +T +TT TST T TTT T +T TT
Sbjct: 487 RSKVGSISPTPSTTTPSTKSTTTTSTKSTATTTSTKSTATT 365
>TC229435 weakly similar to UP|Q14883 (Q14883) Intestinal mucin (Fragment),
partial (26%)
Length = 1075
Score = 38.1 bits (87), Expect = 0.009
Identities = 20/39 (51%), Positives = 21/39 (53%)
Frame = +3
Query: 30 LKLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
L T PP +T T T T STT TTTT TTT TT
Sbjct: 309 LAATSPPPPPGRSSTHTPTPTPASTTTTTTTTATTTSTT 425
Score = 34.7 bits (78), Expect = 0.096
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTT 65
T P +TTT TTTTATTT T++ T+ + + ++
Sbjct: 363 TPTPASTTTTTTTTATTTSTTSPATSASTSASS 461
Score = 33.1 bits (74), Expect = 0.28
Identities = 15/36 (41%), Positives = 21/36 (57%)
Frame = +3
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
T P +T TTTT T T TSTT T+ +T+ ++
Sbjct: 357 TPTPTPASTTTTTTTTATTTSTTSPATSASTSASSS 464
Score = 31.2 bits (69), Expect = 1.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTT 65
T P T TTTT TTT T+T+ T+ + +T
Sbjct: 351 THTPTPTPASTTTTTTTTATTTSTTSPATSAST 449
>TC231868 similar to UP|Q93424 (Q93424) C. elegans GRL-23 protein
(Corresponding sequence E02A10.2), partial (23%)
Length = 790
Score = 37.7 bits (86), Expect = 0.011
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = -2
Query: 31 KLTKAPPTTTTETTTTATTTETSTTETTTTKTTTT 65
+++ A TTTT T TT T + ST TTT TTTT
Sbjct: 333 QISTASATTTTTTATTTTLNQISTASTTTRTTTTT 229
Score = 37.0 bits (84), Expect = 0.019
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = -2
Query: 35 APPTTTTETTTTATTTET----STTETTTTKTTTTPTT 68
A TTTT + TT+TTT T ST TTT TT T TT
Sbjct: 393 ASTTTTTASATTSTTTTTLNQISTASATTTTTTATTTT 280
Score = 35.8 bits (81), Expect = 0.043
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTT--KTTTTPTTGEEDQL*ILGFVMSTT 84
T PTTTT TT +T +ST TTTT TT+ TT +Q+ +TT
Sbjct: 459 TTTSPTTTTATTLQPISTPSSTASTTTTTASATTSTTTTTLNQISTASATTTTT 298
Score = 34.7 bits (78), Expect = 0.096
Identities = 21/53 (39%), Positives = 26/53 (48%), Gaps = 5/53 (9%)
Frame = -2
Query: 37 PTTTTETTTTATTTETSTTETT-----TTKTTTTPTTGEEDQL*ILGFVMSTT 84
P++T TTTT + TSTT TT T TTT TT L + +TT
Sbjct: 405 PSSTASTTTTTASATTSTTTTTLNQISTASATTTTTTATTTTLNQISTASTTT 247
Score = 33.9 bits (76), Expect = 0.16
Identities = 17/37 (45%), Positives = 21/37 (55%)
Frame = -2
Query: 32 LTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
L + + T TTTTATTT + T +T T TT TT
Sbjct: 339 LNQISTASATTTTTTATTTTLNQISTASTTTRTTTTT 229
Score = 33.5 bits (75), Expect = 0.21
Identities = 17/37 (45%), Positives = 21/37 (55%)
Frame = -2
Query: 27 LCRLKLTKAPPTTTTETTTTATTTETSTTETTTTKTT 63
L ++ A TTTT TTTT T++T T TT TT
Sbjct: 339 LNQISTASATTTTTTATTTTLNQISTASTTTRTTTTT 229
Score = 32.3 bits (72), Expect = 0.48
Identities = 17/47 (36%), Positives = 24/47 (50%)
Frame = -2
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTTPTTGEEDQL*ILGFVMSTT 84
+T + TTTT T T T+ + +T TTT TT + + STT
Sbjct: 327 STASATTTTTTATTTTLNQISTASTTTRTTTTTLNHISTASATTSTT 187
Score = 30.0 bits (66), Expect = 2.4
Identities = 16/31 (51%), Positives = 19/31 (60%)
Frame = -2
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTTPTT 68
+TTT TTTT T ST TT+ T +T TT
Sbjct: 258 STTTRTTTT-TLNHISTASATTSTTASTATT 169
>TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein,
complete
Length = 748
Score = 37.4 bits (85), Expect = 0.015
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -2
Query: 39 TTTETTTTATTTETSTTETTTTKTTTTPTTG 69
+TT TTTT +TT T+T TT+T + T TTG
Sbjct: 414 STTATTTTISTTATTTISTTSTASAATATTG 322
Score = 33.5 bits (75), Expect = 0.21
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = -2
Query: 39 TTTETTTTATTTETSTTETTTTKTTTT 65
T +TTATTT STT TTT TT+T
Sbjct: 429 TVVSPSTTATTTTISTTATTTISTTST 349
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/26 (57%), Positives = 17/26 (64%)
Frame = -2
Query: 43 TTTTATTTETSTTETTTTKTTTTPTT 68
+T TAT STT TTTT +TT TT
Sbjct: 444 STATATVVSPSTTATTTTISTTATTT 367
>TC228858 weakly similar to UP|Q9W0H4 (Q9W0H4) CG2469-PA (Cg2469-pb)
(LD24034p), partial (5%)
Length = 811
Score = 37.0 bits (84), Expect = 0.019
Identities = 19/34 (55%), Positives = 21/34 (60%)
Frame = -2
Query: 32 LTKAPPTTTTETTTTATTTETSTTETTTTKTTTT 65
+T A TT TTTTATT T+ T TT TTTT
Sbjct: 372 ITGAAAVATTVTTTTATTAVTTWTNTTAIATTTT 271
Score = 32.0 bits (71), Expect = 0.62
Identities = 18/34 (52%), Positives = 20/34 (57%), Gaps = 3/34 (8%)
Frame = -2
Query: 38 TTTTETTTTATTTETSTTE---TTTTKTTTTPTT 68
T TT T TTA TT T+TT TTTT+ TT
Sbjct: 345 TVTTTTATTAVTTWTNTTAIATTTTTRPAAASTT 244
>TC234725 similar to UP|RFX1_HUMAN (P22670) MHC class II regulatory factor
RFX1 (RFX) (Enhancer factor C) (EF-C), partial (3%)
Length = 407
Score = 37.0 bits (84), Expect = 0.019
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +3
Query: 36 PPTTTTETTTTATTTETSTTETTTTKTTT 64
P + +T TT TTT T+TT TTTT TTT
Sbjct: 258 PSSPIIQTPTTTTTTTTTTTNTTTTTTTT 344
Score = 34.3 bits (77), Expect = 0.13
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +3
Query: 37 PTTTTETTTTATTTETSTTETTTTK 61
PTTTT TTTT T T T+TT T K
Sbjct: 282 PTTTTTTTTTTTNTTTTTTTTRERK 356
Score = 33.5 bits (75), Expect = 0.21
Identities = 16/26 (61%), Positives = 18/26 (68%)
Frame = +3
Query: 35 APPTTTTETTTTATTTETSTTETTTT 60
+P T TTTT TTT T+TT TTTT
Sbjct: 264 SPIIQTPTTTTTTTTTTTNTTTTTTT 341
Score = 33.5 bits (75), Expect = 0.21
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 37 PTTTTETTTTATTTETSTTETTTTKTTTT 65
P++ T T TTT T+TT TTT TTTT
Sbjct: 258 PSSPIIQTPTTTTTTTTTTTNTTTTTTTT 344
Score = 33.5 bits (75), Expect = 0.21
Identities = 16/24 (66%), Positives = 17/24 (70%)
Frame = +3
Query: 48 TTTETSTTETTTTKTTTTPTTGEE 71
T T T+TT TTTT TTTT TT E
Sbjct: 279 TPTTTTTTTTTTTNTTTTTTTTRE 350
Score = 33.1 bits (74), Expect = 0.28
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +3
Query: 39 TTTETTTTATTTETSTTETTTTK 61
T T TTTT TTT +TT TTTT+
Sbjct: 279 TPTTTTTTTTTTTNTTTTTTTTR 347
Score = 32.3 bits (72), Expect = 0.48
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 32 LTKAPPTTTTETTTTATTTETSTT 55
+ + P TTTT TTTT TT T+TT
Sbjct: 270 IIQTPTTTTTTTTTTTNTTTTTTT 341
Score = 32.0 bits (71), Expect = 0.62
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +3
Query: 46 TATTTETSTTETTTTKTTTTPT 67
T TTT T+TT TT T TTTT T
Sbjct: 279 TPTTTTTTTTTTTNTTTTTTTT 344
Score = 29.6 bits (65), Expect = 3.1
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +3
Query: 33 TKAPPTTTTETTTTATTTETSTTE 56
T TTTT TTT TTT T+T E
Sbjct: 279 TPTTTTTTTTTTTNTTTTTTTTRE 350
>TC203463 weakly similar to UP|Q8IMS9 (Q8IMS9) CG31439-PA, partial (13%)
Length = 875
Score = 37.0 bits (84), Expect = 0.019
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = +3
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTTPTTG 69
TT T TTTT TT TT T TT T+TTP G
Sbjct: 543 TTATPTTTTPTTGTPPTTLTPTTPTSTTPGIG 638
Score = 34.7 bits (78), Expect = 0.096
Identities = 21/39 (53%), Positives = 22/39 (55%), Gaps = 2/39 (5%)
Frame = +3
Query: 33 TKAPPTTTTETTTTATT--TETSTTETTTTKTTTTPTTG 69
T PPTT T TT T+TT T T TT T T T TTG
Sbjct: 576 TGTPPTTLTPTTPTSTTPGIGTGTGTTTGTGTGTGTTTG 692
Score = 33.9 bits (76), Expect = 0.16
Identities = 22/42 (52%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = +3
Query: 33 TKAPPTTTTETT-----TTATTTETSTTETTTTKTTTTPTTG 69
T A PTTTT TT T TT TSTT T T TT TG
Sbjct: 543 TTATPTTTTPTTGTPPTTLTPTTPTSTTPGIGTGTGTTTGTG 668
Score = 32.3 bits (72), Expect = 0.48
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 37 PTTTTETTTTATTTETSTTETTTTKTTTTPTTG 69
P T T ++ + T TT T TTTTPTTG
Sbjct: 483 PPTAASTCVYPSSPSNAGTGTTATPTTTTPTTG 581
Score = 32.0 bits (71), Expect = 0.62
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 35 APPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
+P T TT T TTT +T TT T TTPT+
Sbjct: 519 SPSNAGTGTTATPTTTTPTTGTPPTTLTPTTPTS 620
>TC217547 weakly similar to UP|Q61869 (Q61869) Keratin 2 epidermis, partial
(8%)
Length = 700
Score = 36.6 bits (83), Expect = 0.025
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -2
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
T+ P T T T++T++ + TT +T TTTTPTT
Sbjct: 408 TRLSPPATIVTVTSSTSSPSPTTTASTASTTTTPTT 301
>TC210023 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 protein
(Corresponding sequence ZK643.8), partial (12%)
Length = 819
Score = 36.6 bits (83), Expect = 0.025
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = -2
Query: 38 TTTTETTTTATTT--ETSTTETTTTKTTTTPTT 68
+TTT TTT TTT + ST TTTT T+TT +T
Sbjct: 335 STTTRTTTATTTTLNQISTASTTTTTTSTTTST 237
Score = 36.2 bits (82), Expect = 0.033
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 35 APPTTTTETTTTATTTETSTTETTTTKT-TTTPTTGEEDQL*ILGFVMSTT 84
A TT T T TT T + ST TTTT T TTT T +Q+ STT
Sbjct: 338 ASTTTRTTTATTTTLNQISTASTTTTTTSTTTSTATTLNQISTASTTTSTT 186
Score = 36.2 bits (82), Expect = 0.033
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = -2
Query: 39 TTTETTTTATTTETSTTETTTTKTTTTPTT 68
TTT TTTT T++T TTTT TTT+ T
Sbjct: 320 TTTATTTTLNQISTASTTTTTTSTTTSTAT 231
Score = 36.2 bits (82), Expect = 0.033
Identities = 18/42 (42%), Positives = 24/42 (56%)
Frame = -2
Query: 27 LCRLKLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
L ++ TTT+ TT+TATT +T +TTT TTT T
Sbjct: 296 LNQISTASTTTTTTSTTTSTATTLNQISTASTTTSTTTAAAT 171
Score = 36.2 bits (82), Expect = 0.033
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = -2
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
T + +TT TTTATTT + T +T TTTT TT
Sbjct: 353 TPSSTASTTTRTTTATTTTLNQISTASTTTTTTSTT 246
Score = 35.8 bits (81), Expect = 0.043
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = -2
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTTPTTGEEDQL*ILGFVMSTT 84
+TTT TT+T T+T T+ + +T TTT+ TT L + +TT
Sbjct: 275 STTTTTTSTTTSTATTLNQISTASTTTSTTTAAATTLNQISTASTTT 135
Score = 34.3 bits (77), Expect = 0.13
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Frame = -2
Query: 38 TTTTETTTTATTTE----TSTTETTTTKTTTTPTT 68
+TTT TTT TT + S+T +TTT+TTT TT
Sbjct: 404 STTTSTTTATTTLQHRSTPSSTASTTTRTTTATTT 300
Score = 34.3 bits (77), Expect = 0.13
Identities = 20/42 (47%), Positives = 24/42 (56%), Gaps = 6/42 (14%)
Frame = -2
Query: 33 TKAPPTTTTETTTTATTT------ETSTTETTTTKTTTTPTT 68
T + +TT +TTTATTT +ST TTT TT T TT
Sbjct: 422 TPSSTASTTTSTTTATTTLQHRSTPSSTASTTTRTTTATTTT 297
Score = 32.7 bits (73), Expect = 0.37
Identities = 18/32 (56%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 38 TTTTETTTTATTTET-STTETTTTKTTTTPTT 68
TTTT T TT T S+T +TTT TTT TT
Sbjct: 464 TTTTSTATTLQPISTPSSTASTTTSTTTATTT 369
Score = 32.3 bits (72), Expect = 0.48
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 38 TTTTETTTTATTT--ETSTTETTTTKTTTT 65
+TTT TTT A TT + ST TTT+ T TT
Sbjct: 206 STTTSTTTAAATTLNQISTASTTTSTTATT 117
Score = 32.0 bits (71), Expect = 0.62
Identities = 18/41 (43%), Positives = 24/41 (57%), Gaps = 6/41 (14%)
Frame = -2
Query: 31 KLTKAPPTTTTETTTTATTTE------TSTTETTTTKTTTT 65
+++ A TTTT +TTT+T T STT +TTT TT
Sbjct: 290 QISTASTTTTTTSTTTSTATTLNQISTASTTTSTTTAAATT 168
Score = 29.3 bits (64), Expect = 4.0
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -2
Query: 39 TTTETTTTATTTETSTTETTTTKTTTTPTT 68
+T TTT+ TT +T +T +TTT TT
Sbjct: 215 STASTTTSTTTAAATTLNQISTASTTTSTT 126
>TC219773 similar to UP|Q9VQA9 (Q9VQA9) CG15388-PA, partial (3%)
Length = 662
Score = 35.8 bits (81), Expect = 0.043
Identities = 19/39 (48%), Positives = 25/39 (63%)
Frame = +2
Query: 30 LKLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
L+ AP + + +TT TTT +TT TTTT TTT P+T
Sbjct: 410 LRFLSAPSSPCSTSTTNGTTTSPTTT-TTTTTTTT*PST 523
Score = 33.1 bits (74), Expect = 0.28
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTTP 66
TTT+ TTTT TTT T+ T TT +T P
Sbjct: 464 TTTSPTTTTTTTTTTT*PSTPTTSYSTLP 550
Score = 32.7 bits (73), Expect = 0.37
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +2
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTP 66
T PTTTT TTTT T T TT +T TP
Sbjct: 464 TTTSPTTTTTTTTTTT*PSTPTTSYSTLPPPWTP 565
Score = 32.7 bits (73), Expect = 0.37
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +2
Query: 28 CRLKLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
C T T+ T TTTT TTT +T TT+ T P T
Sbjct: 440 CSTSTTNGTTTSPTTTTTTTTTTT*PSTPTTSYSTLPPPWT 562
>TC204100 homologue to UP|Q93WA5 (Q93WA5) Ribosomal protein L32, complete
Length = 1145
Score = 35.8 bits (81), Expect = 0.043
Identities = 21/41 (51%), Positives = 23/41 (55%), Gaps = 2/41 (4%)
Frame = +1
Query: 29 RLKLTKAPPTTTTETTT--TATTTETSTTETTTTKTTTTPT 67
R+ A TTT TTT TA TT T+T TT T T TT T
Sbjct: 214 RVTTVSATAITTTTTTTIATAITTVTATVSTTATATATTTT 336
Score = 33.1 bits (74), Expect = 0.28
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 38 TTTTETTTTATTTETSTTETTTT--KTTTTPTT 68
TTTT T TA TT T+T TT T TTTT +T
Sbjct: 247 TTTTTTIATAITTVTATVSTTATATATTTTIST 345
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 35 APPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
+P + TT TTT TT + TTTT T T T
Sbjct: 181 SPASITTITTTRVTTVSATAITTTTTTTIATAIT 282
>TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, complete
Length = 1937
Score = 35.8 bits (81), Expect = 0.043
Identities = 21/41 (51%), Positives = 23/41 (55%), Gaps = 2/41 (4%)
Frame = -2
Query: 29 RLKLTKAPPTTTTETTT--TATTTETSTTETTTTKTTTTPT 67
R+ A TTT TTT TA TT T+T TT T T TT T
Sbjct: 1663 RVTTVSATAITTTTTTTIATAITTVTATVSTTATATATTTT 1541
Score = 33.1 bits (74), Expect = 0.28
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -2
Query: 38 TTTTETTTTATTTETSTTETTTT--KTTTTPTT 68
TTTT T TA TT T+T TT T TTTT +T
Sbjct: 1630 TTTTTTIATAITTVTATVSTTATATATTTTIST 1532
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 35 APPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
+P + TT TTT TT + TTTT T T T
Sbjct: 1696 SPASITTITTTRVTTVSATAITTTTTTTIATAIT 1595
>CA939026
Length = 426
Score = 35.8 bits (81), Expect = 0.043
Identities = 28/65 (43%), Positives = 34/65 (52%)
Frame = +2
Query: 9 QNLKVLLQPSKLC*IR*RLCRLKLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
+ L++ LQPS L L+ PP T TTT+AT STT TTTT TTT T
Sbjct: 113 RTLQLQLQPSNPFPFPFSQHGLSLSPTPPPRPT-TTTSATAKSPSTTTTTTT--TTTTTF 283
Query: 69 GEEDQ 73
G +Q
Sbjct: 284 GFFEQ 298
>TC226468 weakly similar to UP|O65450 (O65450) Glycine-rich protein, partial
(20%)
Length = 1041
Score = 35.8 bits (81), Expect = 0.043
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = -1
Query: 28 CRLKLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTTGEED 72
C K+P T+ + TTTT T T +T TTTT TT T +D
Sbjct: 768 CTCFKPKSPTTSNSNTTTTKTFTGLTTPATTTTCCVTTTITTTKD 634
Score = 30.8 bits (68), Expect = 1.4
Identities = 18/43 (41%), Positives = 22/43 (50%), Gaps = 8/43 (18%)
Frame = -2
Query: 34 KAPPTTTTETTTTATTTETST--------TETTTTKTTTTPTT 68
K PPTT TT TAT+ +ST T + TT+TP T
Sbjct: 962 KLPPTTLPPTTPTATSPSSSTPLAVTQPPTVVASPPTTSTPPT 834
>TC214476 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (14%)
Length = 642
Score = 35.4 bits (80), Expect = 0.056
Identities = 16/31 (51%), Positives = 23/31 (73%)
Frame = +2
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTTPTT 68
TTT +T+T+ +T T+TT T++ TTTT TT
Sbjct: 323 TTTVASTSTSASTSTTTTARTSSFTTTTSTT 415
Score = 32.0 bits (71), Expect = 0.62
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTTPTT 68
+ +T TTTTA T+ +TT +TTT T+ T +T
Sbjct: 350 SASTSTTTTARTSSFTTTTSTTTVTSAT*ST 442
Score = 32.0 bits (71), Expect = 0.62
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 33 TKAPPTTTTETTTTATTTETSTT-ETTTTKTTTTPTT 68
T T++ TTTT+TTT TS T T+TT T+T T+
Sbjct: 365 TTTTARTSSFTTTTSTTTVTSAT*STSTTLATSTSTS 475
Score = 31.6 bits (70), Expect = 0.81
Identities = 21/56 (37%), Positives = 26/56 (45%), Gaps = 4/56 (7%)
Frame = +2
Query: 33 TKAPPTTTTETTTTATTTETSTTETT----TTKTTTTPTTGEEDQL*ILGFVMSTT 84
T A +TTT T++ TT TSTT T +T TT +T L F S T
Sbjct: 347 TSASTSTTTTARTSSFTTTTSTTTVTSAT*STSTTLATSTSTSSSLATTTFTPSCT 514
Score = 31.6 bits (70), Expect = 0.81
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
T + TTT+ TT T+ T TSTT T+T T+++ T
Sbjct: 383 TSSFTTTTSTTTVTSAT*STSTTLATSTSTSSSLAT 490
Score = 30.8 bits (68), Expect = 1.4
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Frame = +2
Query: 38 TTTTETTTTATTTETSTTET---TTTKTTTTPTT 68
TT T+T+A+T+ T+T T TTT +TTT T+
Sbjct: 326 TTVASTSTSASTSTTTTARTSSFTTTTSTTTVTS 427
Score = 30.8 bits (68), Expect = 1.4
Identities = 14/32 (43%), Positives = 21/32 (64%)
Frame = +2
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTT 64
T +T+T +T+ TTT +++ TTTT TTT
Sbjct: 323 TTTVASTSTSASTSTTTTARTSSFTTTTSTTT 418
Score = 28.1 bits (61), Expect = 9.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 39 TTTETTTTATTTETSTTETTTTKTTTTPTT 68
T+ ++ ATTT ST+ + +T TTTT T
Sbjct: 296 TSNSSSFIATTTVASTSTSASTSTTTTART 385
>BF071504
Length = 422
Score = 35.4 bits (80), Expect = 0.056
Identities = 19/35 (54%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Frame = +3
Query: 35 APPTTTTET-TTTATTTETSTTETTTTKTTTTPTT 68
AP T T TTT TTT +TT TTTT TT + T
Sbjct: 213 APATATAAAATTTTTTTSVTTTATTTTSTTLSALT 317
>TC223010 weakly similar to UP|Q08196 (Q08196) Cysteine-rich extensin-like
protein-3, partial (18%)
Length = 588
Score = 35.0 bits (79), Expect = 0.074
Identities = 22/42 (52%), Positives = 24/42 (56%), Gaps = 6/42 (14%)
Frame = +2
Query: 34 KAPPTTTTETTT-TATTTETSTTETTT-----TKTTTTPTTG 69
KAP T T TTT T+TT T TT TTT +KT PT G
Sbjct: 326 KAPTTNLTPTTTLTSTTISTMTTSTTTICTRNSKTPPDPTPG 451
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.347 0.149 0.494
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,827,053
Number of Sequences: 63676
Number of extensions: 284804
Number of successful extensions: 7030
Number of sequences better than 10.0: 194
Number of HSP's better than 10.0 without gapping: 4332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5936
length of query: 478
length of database: 12,639,632
effective HSP length: 101
effective length of query: 377
effective length of database: 6,208,356
effective search space: 2340550212
effective search space used: 2340550212
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC123898.6