TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC123593.3 + phase: 0 /pseudo
         (176 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC216444 similar to UP|Q6L5N9 (Q6L5N9) Flowering locus T like pr...   150  3e-37
AW707147 similar to SP|Q9XH44|CET1_ CEN-like protein 1. [Common ...   119  6e-28
TC219541 similar to UP|Q84XL0 (Q84XL0) SP3D, partial (41%)            117  4e-27
BU548465 similar to GP|28200390|gb| SP3D {Lycopersicon esculentu...    79  1e-15
CA936501                                                               30  0.59
TC209685 homologue to UP|Q61402 (Q61402) Gcap1 protein (Fragment...    29  1.3
TC226613 similar to UP|Q8H0V8 (Q8H0V8) Spliceosome associated pr...    27  3.8
TC208128 homologue to UP|Q8V7F3 (Q8V7F3) ORF1 (Fragment), partia...    27  5.0
TC217808                                                               27  6.5
TC234767 similar to UP|Q94BT3 (Q94BT3) AT5g41810/K16L22_9, parti...    27  6.5

>TC216444 similar to UP|Q6L5N9 (Q6L5N9) Flowering locus T like protein,
           complete
          Length = 860

 Score =  150 bits (379), Expect = 3e-37
 Identities = 79/162 (48%), Positives = 107/162 (65%), Gaps = 1/162 (0%)
 Frame = +2

Query: 8   NPLAVGRVIGDVLDPFESTIPLLVTYGNRTVTNGGELKPSQVANQPQVIIGVNDPTALYT 67
           +PL VGRVIGDV+D F  ++ + V +G++ VTNG ++KPS   + P++ +  N    LYT
Sbjct: 104 DPLVVGRVIGDVVDMFIPSVNMSVYFGSKHVTNGCDIKPSIAISPPKLTLTGNMDN-LYT 280

Query: 68  LVLVDPDAPSPSYPSFREYLHWMVTDIPATNAASFGNEVVSYEKPRPNLGIHRFVFVLLH 127
           LV+ DPDAPSPS PS RE++HW++ DIP       G E+VSY  PRP +GIHR++FVL  
Sbjct: 281 LVMTDPDAPSPSEPSMREWIHWILVDIPGGTNPFRGKEIVSYVGPRPPIGIHRYIFVLFQ 460

Query: 128 QQ-CRQRVYAPGWRQNFNTREFIEFYNLGSPVAAVFFNCQRE 168
           Q+     V  P  R +FNTR F    +LG PVA V+FN Q+E
Sbjct: 461 QKGPLGLVEQPPTRASFNTRYFARQLDLGLPVATVYFNSQKE 586


>AW707147 similar to SP|Q9XH44|CET1_ CEN-like protein 1. [Common tobacco]
           {Nicotiana tabacum}, partial (55%)
          Length = 417

 Score =  119 bits (299), Expect = 6e-28
 Identities = 58/99 (58%), Positives = 68/99 (68%)
 Frame = +3

Query: 78  PSYPSFREYLHWMVTDIPATNAASFGNEVVSYEKPRPNLGIHRFVFVLLHQQCRQRVYAP 137
           PS P  RE+LHWMVTDIP T   SFG E+V YE P+P +GIHR+VF+L  Q+ RQ V  P
Sbjct: 3   PSDPCLREHLHWMVTDIPGTTDVSFGKEIVGYESPKPVIGIHRYVFILFKQRGRQTVRPP 182

Query: 138 GWRQNFNTREFIEFYNLGSPVAAVFFNCQRETGSGGRTF 176
             R +FNTR F E   LG PVAAV+FN QRET +  R F
Sbjct: 183 SSRDHFNTRRFSEENGLGLPVAAVYFNAQRETAARRR*F 299


>TC219541 similar to UP|Q84XL0 (Q84XL0) SP3D, partial (41%)
          Length = 758

 Score =  117 bits (292), Expect = 4e-27
 Identities = 54/72 (75%), Positives = 60/72 (83%)
 Frame = +2

Query: 103 GNEVVSYEKPRPNLGIHRFVFVLLHQQCRQRVYAPGWRQNFNTREFIEFYNLGSPVAAVF 162
           G+EVV+YE PRP +GIHR VFVL  Q  R+ VYAPGWRQNFNTREF E YNLG PVAAV+
Sbjct: 236 GHEVVTYESPRPMMGIHRLVFVLFRQLGRETVYAPGWRQNFNTREFAELYNLGLPVAAVY 415

Query: 163 FNCQRETGSGGR 174
           FN QRE+GSGGR
Sbjct: 416 FNIQRESGSGGR 451


>BU548465 similar to GP|28200390|gb| SP3D {Lycopersicon esculentum}, partial
           (29%)
          Length = 694

 Score = 79.0 bits (193), Expect = 1e-15
 Identities = 38/62 (61%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
 Frame = -3

Query: 114 PNLGIHRFVFVLLHQQCRQRVYAPGWRQNFNTREFIEFYNLGSPVAAVFFNCQRETG-SG 172
           P +GIHR V VL  Q  R  +  PGWRQNFNTR+F E YNLG PVAA++FNC+RE   S 
Sbjct: 692 PIVGIHRIVXVLFRQLRRLTLXXPGWRQNFNTRDFAEIYNLGLPVAAMYFNCKRENDQSS 513

Query: 173 GR 174
           GR
Sbjct: 512 GR 507


>CA936501 
          Length = 266

 Score = 30.0 bits (66), Expect = 0.59
 Identities = 14/23 (60%), Positives = 16/23 (68%)
 Frame = +2

Query: 154 LGSPVAAVFFNCQRETGSGGRTF 176
           LG PVA V+FN QRET +  R F
Sbjct: 2   LGLPVAVVYFNAQRETAARRR*F 70


>TC209685 homologue to UP|Q61402 (Q61402) Gcap1 protein (Fragment), partial
           (20%)
          Length = 1095

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 37  TVTNGGELKPSQVANQPQVIIGVNDPTALYTLVLVDPDAPSPSY 80
           TV  GG+++P  + ++ +V+ G   P     LV  D + P P++
Sbjct: 407 TVEGGGKMEPKMLVDEDEVVEGSLGPKR*SKLVNDDEEEPPPTF 276


>TC226613 similar to UP|Q8H0V8 (Q8H0V8) Spliceosome associated protein-like
           (At4g21660), partial (59%)
          Length = 1844

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 20/75 (26%), Positives = 34/75 (44%), Gaps = 5/75 (6%)
 Frame = +2

Query: 43  ELKPSQVANQPQVIIGVNDPTALYTLVLVDPDAPSPSYPSFREYLHWMVTDIPATNA--- 99
           E+KP  ++++ +  +G+ + +    L+ +    P PSYP  +         IP  NA   
Sbjct: 551 EMKPGMLSHELKEALGMPEGSPPPWLINMQRYGPPPSYPHLK---------IPGLNAPIP 703

Query: 100 --ASFGNEVVSYEKP 112
             ASFG     + KP
Sbjct: 704 PGASFGYHPGGWGKP 748


>TC208128 homologue to UP|Q8V7F3 (Q8V7F3) ORF1 (Fragment), partial (19%)
          Length = 711

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 13/41 (31%), Positives = 19/41 (45%)
 Frame = -1

Query: 44  LKPSQVANQPQVIIGVNDPTALYTLVLVDPDAPSPSYPSFR 84
           LKP  ++  P  +   + P A   L  +   +PSP   SFR
Sbjct: 513 LKPPPISRPPPTLTHKSPPVATQILQSIPSPSPSPPTTSFR 391


>TC217808 
          Length = 1106

 Score = 26.6 bits (57), Expect = 6.5
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 66  YTLVLVDPDAPSPSYPSFREYLHWMVTDIPATNA 99
           ++L++VDP+   PS   FRE L  M  ++PA+ A
Sbjct: 555 FSLLVVDPN-DEPSVNKFRECLKKMRAEVPASLA 653


>TC234767 similar to UP|Q94BT3 (Q94BT3) AT5g41810/K16L22_9, partial (23%)
          Length = 745

 Score = 26.6 bits (57), Expect = 6.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 60  NDPTALYTLVLVDPDAPSPSYPSFREYLHWM 90
           N P  +YTL +++ +  SP +P+F+  L W+
Sbjct: 457 NMPMTVYTLFMINLNRFSPQFPNFQS-LRWV 546


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,146,006
Number of Sequences: 63676
Number of extensions: 119424
Number of successful extensions: 494
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of query: 176
length of database: 12,639,632
effective HSP length: 91
effective length of query: 85
effective length of database: 6,845,116
effective search space: 581834860
effective search space used: 581834860
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)