TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC123575.7 - phase: 0 /pseudo
         (378 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW760164 similar to GP|11994422|dbj oxidoreductase  short-chain ...    95  5e-20
CA937893 similar to GP|20805072|dbj retrovirus-related pol polyp...    53  2e-07
TC227533 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17...    30  2.3

>AW760164 similar to GP|11994422|dbj oxidoreductase  short-chain
           dehydrogenase/reductase family-like protein {Arabidopsis
           thaliana}, partial (9%)
          Length = 428

 Score = 95.1 bits (235), Expect = 5e-20
 Identities = 48/115 (41%), Positives = 73/115 (62%)
 Frame = +3

Query: 4   SKWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAI 63
           +K+ +EKFTG NDFGL  +KMR +L+QQ  VEAL G+ ++   +   +K  +  KA +AI
Sbjct: 84  AKYEVEKFTGQNDFGLC*LKMRALLVQQGLVEALDGEIKLEKMMADGDKKALLQKAYNAI 263

Query: 64  VLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVESKTN 118
           +L LGDKVLR+V++ET  V +W+KL+ L +    T   C +   Y  +  E ++N
Sbjct: 264 ILSLGDKVLRQVSKETTAVGVWSKLEVLDIDSVGTFTMCHEALKYLKKGGEGRSN 428


>CA937893 similar to GP|20805072|dbj retrovirus-related pol polyprotein from
           transposon TNT 1-94-like, partial (7%)
          Length = 412

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 31/105 (29%), Positives = 55/105 (51%)
 Frame = -2

Query: 4   SKWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAI 63
           +K+ + KF G+ +F LW+ +++ +L  Q  ++ L+            E  E+ ++  + I
Sbjct: 312 AKFEVGKFDGTGNFRLWQKRVKDLLA*QGLLKVLRDSKSNNTEALDWE--EL*ERTATTI 139

Query: 64  VLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLY 108
            LCL D+ L  +        +W KL+S YM KS T++  L Q+LY
Sbjct: 138 RLCLVDEFLYHMMELAFPGEVWKKLESQYMLKSLTNKLYLMQKLY 4


>TC227533 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
           {Arabidopsis thaliana;} , partial (4%)
          Length = 1519

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/42 (28%), Positives = 24/42 (56%)
 Frame = -3

Query: 60  ISAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQ 101
           IS  +  LG   LR     TI++++W  +  ++++  W+HR+
Sbjct: 512 ISLSITLLGKSCLRISCLMTIILALWLSIVVIHLSWGWSHRR 387


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.356    0.157    0.537 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,226,733
Number of Sequences: 63676
Number of extensions: 186168
Number of successful extensions: 1698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1698
length of query: 378
length of database: 12,639,632
effective HSP length: 99
effective length of query: 279
effective length of database: 6,335,708
effective search space: 1767662532
effective search space used: 1767662532
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 60 (27.7 bits)