TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC123574.8 - phase: 0 /pseudo
         (621 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AI442535                                                               35  0.076
BI701198 similar to GP|6739274|gb|A abscisic acid responsive ele...    35  0.076
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret...    32  0.84
TC229167 homologue to UP|Q8W197 (Q8W197) Aminoimidazole ribonucl...    30  2.4
TC225702 UP|Q9ZRD8 (Q9ZRD8) GMFP5 (Fragment), partial (98%)            30  4.2
TC205868 similar to UP|Q6Z4E4 (Q6Z4E4) Methylmalonate semi-aldeh...    29  7.1
TC205892                                                               28  9.3
AI748283 similar to PIR|S20007|S200 beta-conglycinin alpha chain...    28  9.3

>AI442535 
          Length = 420

 Score = 35.4 bits (80), Expect = 0.076
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 551 CRFCTENGTFLKSCLMCPKWQHALVPWCCPIVIFRICWFGY 591
           C FC+ +  F++ C  C  WQ   V W C    F  CW G+
Sbjct: 210 CNFCSCSYAFVEQCTTC*PWQKERVDWSC--*AFDECWNGW 326


>BI701198 similar to GP|6739274|gb|A abscisic acid responsive
           elements-binding factor {Arabidopsis thaliana}, partial
           (7%)
          Length = 421

 Score = 35.4 bits (80), Expect = 0.076
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 551 CRFCTENGTFLKSCLMCPKWQHALVPWCCPIVIFRICWFGY 591
           C FC+ +  F++ C  C  WQ   V W C    F  CW G+
Sbjct: 79  CNFCSCSYAFVEQCTTC*PWQKERVDWSC--*AFDECWNGW 195


>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
           reverse transcriptase, partial (7%)
          Length = 956

 Score = 32.0 bits (71), Expect = 0.84
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
 Frame = -2

Query: 120 IFLNYYEDYFS*AEGLHSGSLYI*MCNFG----VRD*CY**EAFWWKCST*G*Y*KGL*Y 175
           I+LNY        +GLH       +C+F     VR      ++ WW+      + +G *Y
Sbjct: 847 IYLNY--------QGLH-------LCHFRSYKYVRQ-----KSLWWELGLKDRHCEGF*Y 728

Query: 176 FGLEFSNCGFATVWFCFCLHGLDSNYLTICPSFDSCQWQRSGVLSLLQGCLAGGSSFP 233
            G    +     +W    L  LD +   IC +   C W+  G L L +GC    S  P
Sbjct: 727 PGQGLPHLCPK*IWV*PHLL*LDPSNFIICKALYLC*WRTCGFLLLSKGCKTRRSPIP 554


>TC229167 homologue to UP|Q8W197 (Q8W197) Aminoimidazole ribonucleotide
           carboxylase  , partial (32%)
          Length = 985

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 497 WYKGTYWFGCCQFTLGCWNGRKYSFFFVG 525
           W     W+GCC ++L C+  R  + F++G
Sbjct: 306 WCSSLAWYGCCSYSLACY-WRSCACFYLG 389


>TC225702 UP|Q9ZRD8 (Q9ZRD8) GMFP5 (Fragment), partial (98%)
          Length = 1431

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 11/32 (34%), Positives = 18/32 (55%), Gaps = 1/32 (3%)
 Frame = -3

Query: 175 YFGLEFSNCGFAT-VWFCFCLHGLDSNYLTIC 205
           +F + F  C F++ +W+CFCL   +  Y   C
Sbjct: 124 FFSVSFLGCSFSSPIWWCFCLIEYEK*YRGCC 29


>TC205868 similar to UP|Q6Z4E4 (Q6Z4E4) Methylmalonate semi-aldehyde
            dehydrogenase, partial (92%)
          Length = 2033

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 224  GCLAGGSSFPTSILHCRGGS*QG----DFFGSQCRKNCAYVILLWC 265
            G L GG+ +P+S  H  GG * G     +   Q RK C Y+  +WC
Sbjct: 1407 GVLQGGNFWPSSSFH--GG**LGRSHKHYQQ*QVRKWCFYIYYIWC 1538


>TC205892 
          Length = 738

 Score = 28.5 bits (62), Expect = 9.3
 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 197 LDSNYLTICPS-FDSCQWQRSGVLSLLQG-CLAG-GSSFPTSIL 237
           L S  L+ CP  FDSC W RS +  LL+   +AG GSS   S L
Sbjct: 119 LKSEDLSNCPRVFDSCVWSRSELKPLLRSEAMAGSGSSMLYSFL 250


>AI748283 similar to PIR|S20007|S200 beta-conglycinin alpha chain precursor -
           soybean, partial (5%)
          Length = 448

 Score = 28.5 bits (62), Expect = 9.3
 Identities = 13/31 (41%), Positives = 20/31 (63%), Gaps = 3/31 (9%)
 Frame = -2

Query: 205 CPSFDSCQW--QRSGVLSLLQ-GCLAGGSSF 232
           CPS DSC W  Q   ++++++ GC +  SSF
Sbjct: 366 CPSHDSCSWSQQDCALVNVIEVGCSSSSSSF 274


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.365    0.166    0.686 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,809,521
Number of Sequences: 63676
Number of extensions: 685365
Number of successful extensions: 11275
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4680
Number of HSP's successfully gapped in prelim test: 573
Number of HSP's that attempted gapping in prelim test: 6311
Number of HSP's gapped (non-prelim): 5834
length of query: 621
length of database: 12,639,632
effective HSP length: 103
effective length of query: 518
effective length of database: 6,081,004
effective search space: 3149960072
effective search space used: 3149960072
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 62 (28.5 bits)