TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC123570.3 + phase: 0 /pseudo
         (1023 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC221461 similar to UP|Q6ZEY8 (Q6ZEY8) DNA repair/transcription ...    97  5e-20
CD400233 similar to GP|7705214|gb| alcohol dehydrogenase ADH {Ly...    31  3.2
BG352937                                                               30  5.4
TC204837 homologue to UP|Q9LKJ2 (Q9LKJ2) Cytosolic phosphoglycer...    30  7.1
TC204838 homologue to UP|Q9LKJ2 (Q9LKJ2) Cytosolic phosphoglycer...    30  7.1
TC218800 similar to UP|Q9XGC0 (Q9XGC0) Starch synthase isoform S...    29  9.2
TC206527 homologue to UP|Q84L80 (Q84L80) Expansin precursor, par...    29  9.2

>TC221461 similar to UP|Q6ZEY8 (Q6ZEY8) DNA repair/transcription protein
            Mms19-like protein, partial (6%)
          Length = 842

 Score = 96.7 bits (239), Expect = 5e-20
 Identities = 45/58 (77%), Positives = 51/58 (87%)
 Frame = +1

Query: 957  PILQLVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCLDDTKRSVRNEAVKCRQAW 1014
            P   LVRE+ IQCLVALS+LPH RIYP+RTQVL AISKCLDD+KR+VR+EAVKCRQ W
Sbjct: 463  PHKMLVRETAIQCLVALSELPHARIYPMRTQVLRAISKCLDDSKRAVRHEAVKCRQTW 636



 Score = 77.4 bits (189), Expect = 3e-14
 Identities = 40/48 (83%), Positives = 44/48 (91%)
 Frame = +1

Query: 114 TSGDAHVHRDDLSRTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKID 161
           +SGD HV RD LS +LM+AFSSTPLFEPFVIPLLL+KLSSSLHSAKID
Sbjct: 319 SSGDTHVQRD-LSTSLMSAFSSTPLFEPFVIPLLLEKLSSSLHSAKID 459


>CD400233 similar to GP|7705214|gb| alcohol dehydrogenase ADH {Lycopersicon
           esculentum}, partial (28%)
          Length = 547

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 30/114 (26%), Positives = 48/114 (41%), Gaps = 9/114 (7%)
 Frame = -3

Query: 329 GFLYLCIELLAGCRE----LVILSEEKPGT-----CFTILHSSSDFLFNSFCSVLAVSAD 379
           G   L  E  A CR+     ++L  EKPG+     C  +LHS    +   F  ++     
Sbjct: 533 GMATLVQEAYASCRKGWGKAIVLGVEKPGSMLSLSCNEVLHSGKSLVGCLFGGLI----- 369

Query: 380 RFPPDPDIYIGVKGLQILAMFNLDVFPIPKSTFENILKKFMSIIIEDFNKTILW 433
              P  D+ I +K      + NLD F   +  F++I K F  +I     + ++W
Sbjct: 368 ---PKSDVPILLKRYMDKEL-NLDEFVTHEVEFQDINKAFDLLIEGQCLRCVIW 219


>BG352937 
          Length = 486

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 23/84 (27%), Positives = 38/84 (44%), Gaps = 8/84 (9%)
 Frame = -3

Query: 675 TLLKGVVPVAQALGSMV--------NKLISKSNGAEKSDELTLEEALHIIFNTKICFSSD 726
           T+ KG + + ++L S++         K+       E+ + + LE       N + C S  
Sbjct: 484 TIAKGYLSIIESLASVLPPGLVQLGRKVTRIEWQPERHEAMNLE-------NGRPCSSRP 326

Query: 727 NMLQICDGSINRNEIVLTDVCLGM 750
            ML  CDGSI   + V+  V LG+
Sbjct: 325 VMLHFCDGSIMSADHVIVTVSLGV 254


>TC204837 homologue to UP|Q9LKJ2 (Q9LKJ2) Cytosolic phosphoglycerate kinase,
           complete
          Length = 1584

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 33/139 (23%), Positives = 59/139 (41%), Gaps = 4/139 (2%)
 Frame = +3

Query: 109 QFTHTTSGDAHVHRDDLSRTLMNAFSSTP----LFEPFVIPLLLQKLSSSLHSAKIDSLQ 164
           +F    +  A ++ +D   T   A +ST       +P V   L+QK    L  A  +   
Sbjct: 519 EFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPK- 695

Query: 165 YLRVCSSKYGAERIAKYVGAIWSSLKDTINTYLMEPNFSFTLAPTDGIDFPKNEVVIEAL 224
             R  ++  G  +++  +G I  SL + +N  L+     FT     G     + V  + L
Sbjct: 696 --RPFAAIVGGSKVSSKIGVI-ESLLEKVNVLLLGGGMIFTFYKAQGYSVGSSLVEEDKL 866

Query: 225 SLLQQLIVQNSSQLVSLII 243
           SL   L+ +  ++ VSL++
Sbjct: 867 SLATTLLEKAKAKGVSLLL 923


>TC204838 homologue to UP|Q9LKJ2 (Q9LKJ2) Cytosolic phosphoglycerate kinase,
           partial (67%)
          Length = 1062

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 33/139 (23%), Positives = 59/139 (41%), Gaps = 4/139 (2%)
 Frame = +3

Query: 109 QFTHTTSGDAHVHRDDLSRTLMNAFSSTP----LFEPFVIPLLLQKLSSSLHSAKIDSLQ 164
           +F    +  A ++ +D   T   A +ST       +P V   L+QK    L  A  +   
Sbjct: 6   EFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPK- 182

Query: 165 YLRVCSSKYGAERIAKYVGAIWSSLKDTINTYLMEPNFSFTLAPTDGIDFPKNEVVIEAL 224
             R  ++  G  +++  +G I  SL + +N  L+     FT     G     + V  + L
Sbjct: 183 --RPFAAIVGGSKVSSKIGVI-ESLLEKVNVLLLGGGMIFTFYKAQGYSVGSSLVEEDKL 353

Query: 225 SLLQQLIVQNSSQLVSLII 243
           SL   L+ +  ++ VSL++
Sbjct: 354 SLATTLLEKAKAKGVSLLL 410


>TC218800 similar to UP|Q9XGC0 (Q9XGC0) Starch synthase isoform SS III  ,
           partial (34%)
          Length = 1323

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = +1

Query: 167 RVCSSKYGAERIAKYVGAIWSSL------KDTINTYLMEPN-FSFTLAPTDGIDFPKNEV 219
           ++ + +YG+  + +  G ++ ++      KD      +EPN FSF  A T G+D+  N  
Sbjct: 886 QLTAMRYGSIPVVRKTGGLYDTVFDVDHDKDRAQAQGLEPNGFSFDGADTGGVDYALNRA 1065

Query: 220 V 220
           +
Sbjct: 1066I 1068


>TC206527 homologue to UP|Q84L80 (Q84L80) Expansin precursor, partial (96%)
          Length = 1150

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 40/183 (21%), Positives = 69/183 (36%), Gaps = 7/183 (3%)
 Frame = +2

Query: 45  SVASLEEDLIFGFCAAIDAERDPECLMPAFHIVESLARLYPD-----PSGLFASFARDVF 99
           S A     +  G C  +  + DP+  +P   IV +     P+      +G + +     F
Sbjct: 272 STALFNNGMSCGSCYEMKCDTDPKWCLPGSIIVTATNFCPPNFALANNNGGWCNPPLQHF 451

Query: 100 DLLEPYFPIQFTHTTSGDAHVHRDDLSRTLMNAFSSTPLFEPFVIPLLLQKLSSS--LHS 157
           DL EP F +Q     +G   V    +S         T     +   +L+  +  +  +HS
Sbjct: 452 DLAEPAF-LQIAQYKAGIVPVSFRRVSCVKKGGIRFTINGHSYFNLVLITNVGGAGDVHS 628

Query: 158 AKIDSLQYLRVCSSKYGAERIAKYVGAIWSSLKDTINTYLMEPNFSFTLAPTDGIDFPKN 217
             I          S+ G + +++  G  W S     N+YL   + SF +  +DG     N
Sbjct: 629 VSIKG--------SRTGWQTMSRNWGQNWQS-----NSYLNGQSLSFQVTTSDGRTLTSN 769

Query: 218 EVV 220
            +V
Sbjct: 770 NIV 778


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.326    0.141    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,396,216
Number of Sequences: 63676
Number of extensions: 691219
Number of successful extensions: 4010
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4010
length of query: 1023
length of database: 12,639,632
effective HSP length: 107
effective length of query: 916
effective length of database: 5,826,300
effective search space: 5336890800
effective search space used: 5336890800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)