BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122729.3 + phase: 0
(404 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231109 weakly similar to UP|Q9LUP7 (Q9LUP7) Gb|AAD25583.1, par... 119 2e-27
TC216702 similar to UP|Q9LDP5 (Q9LDP5) FLORICAULA/LEAFY-like pro... 87 2e-17
TC218059 weakly similar to UP|Q84KQ9 (Q84KQ9) F-box, partial (7%) 87 2e-17
TC232958 75 4e-14
TC223618 74 2e-13
TC234332 71 8e-13
TC211805 similar to UP|Q9K6E7 (Q9K6E7) BH3782 protein, partial (... 62 4e-10
TC228687 similar to UP|Q9FGY4 (Q9FGY4) Gb|AAF30317.1, partial (79%) 60 1e-09
TC233794 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {A... 57 1e-08
BM121480 53 3e-07
BM143422 50 2e-06
TC216704 similar to UP|Q7PIN1 (Q7PIN1) ENSANGP00000023661 (Fragm... 50 2e-06
BG404995 similar to GP|22831068|dbj OJ1131_E05.32 {Oryza sativa ... 49 5e-06
TC227645 similar to UP|Q9FZK1 (Q9FZK1) F17L21.13, partial (61%) 47 2e-05
AI443156 47 2e-05
TC213957 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {A... 46 3e-05
AW395660 45 6e-05
TC233972 weakly similar to GB|AAP37713.1|30725382|BT008354 At3g2... 44 1e-04
TC219822 homologue to UP|CENB_HUMAN (P07199) Major centromere au... 43 3e-04
TC213823 42 5e-04
>TC231109 weakly similar to UP|Q9LUP7 (Q9LUP7) Gb|AAD25583.1, partial (8%)
Length = 1061
Score = 119 bits (299), Expect = 2e-27
Identities = 98/342 (28%), Positives = 173/342 (49%), Gaps = 10/342 (2%)
Frame = +3
Query: 32 LFALLWLDLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRPYHLLIRN 91
+ A L +++ EIL RLPVKS++ L+ K S+I FV HL+ S + L++R+
Sbjct: 81 MMANLPVEVVTEILSRLPVKSVIRLRSTCKWWRSIIDSRHFVLFHLNKSHSS---LILRH 251
Query: 92 -SELLLVDSRLPSVTAIIPDTTHNFRLNPSDNHPIMIDSCDGIICFENRNDNHVDLVVWN 150
S L +D + P + + +H L N ++ S +G++C N D D+ +WN
Sbjct: 252 RSHLYSLDLKSPEQNPV--ELSHP--LMCYSNSIKVLGSSNGLLCISNVAD---DIALWN 410
Query: 151 PCTGKFKILPPLE-NIPNGKTHT--LYSIGYDRFVDNYKVVAFSCHRQINKSYKYCNSQV 207
P K +ILP + P +Y G+ ++YK+++ + + K + +SQV
Sbjct: 411 PFLRKHRILPADRFHRPQSSLFAARVYGFGHHSPSNDYKLLSITYFVDLQK--RTFDSQV 584
Query: 208 RVHTLGTNFWRRIPNFPSNIMGLPNGYVGKFVSGTINWAIENQ-KNYDSWVILSLDLGNE 266
+++TL ++ W+ +P+ P + +G FVSG+++W + + + ++ +I+S DL E
Sbjct: 585 QLYTLKSDSWKNLPSMPYALCCART--MGVFVSGSLHWLVTRKLQPHEPDLIVSFDLTRE 758
Query: 267 SYQEISRP-DFGLDDPVHIFTLGVSKDCLCVLVYTETLLGIWVMKDYGNKNSWTKLFAVP 325
++ E+ P D + + LG CLCV+ + T +WVM+ YG++NSW KLF +
Sbjct: 759 TFHEVPLPVTVNGDFDMQVALLG---GCLCVVEHRGTGFDVWVMRVYGSRNSWEKLFTLL 929
Query: 326 YAKVGYHGFGFVDLHYIS----EEDDQVFLHFCSKVYVYNYK 363
+ G L Y+ + D +F H K+ YN K
Sbjct: 930 ENNDHHEMMGSGKLKYVRPLALDGDRVLFEHNRIKLCWYNLK 1055
>TC216702 similar to UP|Q9LDP5 (Q9LDP5) FLORICAULA/LEAFY-like protein,
partial (5%)
Length = 1631
Score = 86.7 bits (213), Expect = 2e-17
Identities = 61/243 (25%), Positives = 122/243 (50%), Gaps = 9/243 (3%)
Frame = +3
Query: 145 DLVVWNPCTGKFKILPPLENIPNGK--THTLYS-----IGYDRFVDNYKVVAFSCHRQIN 197
D+ WNP + +ILP L +P + TL++ G+D +YK+V S ++
Sbjct: 27 DIAFWNPSLRQHRILPYLP-VPRRRHPDTTLFAARVCGFGFDHKTRDYKLVRISYFVDLH 203
Query: 198 KSYKYCNSQVRVHTLGTNFWRRIPNFPSNIMGLPNGYVGKFVSGTINWAIENQKNYDSW- 256
+ ++QV+++TL N W+ +P+ P + +G FV +++W + + D
Sbjct: 204 D--RSFDAQVKLYTLRANAWKTLPSLPYALCCART--MGVFVGNSLHWVVTRKLEPDQPD 371
Query: 257 VILSLDLGNESYQEISRPDFGLDDPVHIFTLGVSKDCLCVLV-YTETLLGIWVMKDYGNK 315
+I++ DL ++ ++E+ PD G D L + LC+ V + +T + +WVM++Y +
Sbjct: 372 LIIAFDLTHDIFRELPLPDTGGVDGGFEIDLALLGGSLCMTVNFHKTRIDVWVMREYNRR 551
Query: 316 NSWTKLFAVPYAKVGYHGFGFVDLHYISEEDDQVFLHFCSKVYVYNYKNSTVKTLDIQGQ 375
+SW K+F + ++ L Y S+ + + H +++ Y+ + V + IQG
Sbjct: 552 DSWCKVFTLEESREMRSLKCVRPLGYSSDGNKVLLEHDRKRLFWYDLEKKEVALVKIQGL 731
Query: 376 PSI 378
P++
Sbjct: 732 PNL 740
>TC218059 weakly similar to UP|Q84KQ9 (Q84KQ9) F-box, partial (7%)
Length = 1185
Score = 86.7 bits (213), Expect = 2e-17
Identities = 93/332 (28%), Positives = 153/332 (46%), Gaps = 34/332 (10%)
Frame = +3
Query: 39 DLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHH---LHLSQTRPYHLLIRNSELL 95
+L +L RLP K LL+ KCV KS LI+DP FV ++ + Q++ HLL+
Sbjct: 75 ELVSNVLSRLPSKVLLLCKCVCKSWFDLITDPHFVSNYYVVYNSLQSQEEHLLVIRRPFF 254
Query: 96 LVDSRLPSVTAIIPDTTHNFR-------LNP----SDNHPI---MIDSCDGIICFENRND 141
S L + +++ T++ + LNP + +H ++ C+GI E N
Sbjct: 255 ---SGLKTYISVLSWNTNDPKKHVSSDVLNPPYEYNSDHKYWTEILGPCNGIYFLEG-NP 422
Query: 142 NHVDLVVWNPCTGKFKILPPLE-NIPNGK-THTLYS-IGYDRFVDNYKVVAFS---CHRQ 195
N V+ NP G+FK LP P+G T T Y+ G+D ++YKVV
Sbjct: 423 N----VLMNPSLGEFKALPKSHFTSPHGTYTFTDYAGFGFDPKTNDYKVVVLKDLWLKET 590
Query: 196 INKSYKYCNSQVRVHTLGTNFWRRIP----NFPSNIMGLPNGYVGKFVSGTIN-WAIENQ 250
+ Y +++ +++L +N WR++ P I G + V + + + W +
Sbjct: 591 DEREIGYWSAE--LYSLNSNSWRKLDPSLLPLPIEIWG--SSRVFTYANNCCHWWGFVEE 758
Query: 251 KNYDSWVILSLDLGNESYQEISRPDFGLDDPVHIFTLGVSKDCLCV--LVY----TETLL 304
+ V+L+ D+ ES+++I P TL ++ + LVY TE
Sbjct: 759 SDATQDVVLAFDMVKESFRKIRVPKIRDSSDEKFGTLVPFEESASIGFLVYPVRGTEKRF 938
Query: 305 GIWVMKDYGNKNSWTKLFAVPYAKVGYHGFGF 336
+WVMKDY ++ SW K ++V +V Y GF
Sbjct: 939 DVWVMKDYWDEGSWVKQYSVGPVQVIYKLVGF 1034
>TC232958
Length = 758
Score = 75.5 bits (184), Expect = 4e-14
Identities = 77/238 (32%), Positives = 109/238 (45%), Gaps = 13/238 (5%)
Frame = +1
Query: 39 DLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRPYHLLIRNS---ELL 95
DL EIL RLPVKSL+ K V KS LISDP+F K H L +L S EL
Sbjct: 70 DLITEILLRLPVKSLVRFKSVCKSWLFLISDPRFAKSHFDLFAALADRILFIASSAPELR 249
Query: 96 LVD--SRLPSVTAIIPDTTHNFRLNPSDNHPIMIDSCDGIICFENRNDNHVDLVVWNPCT 153
+D + L +A + T P + +I SC G I + L VWNP T
Sbjct: 250 SIDFNASLHDDSASVAVTVDLPAPKPYFHFVEIIGSCRGFILLHCLS----HLCVWNPTT 417
Query: 154 GKFKILPPLENIPNGKTHTLYSI----GYDRFVDNYKVVAFSCHRQINKSYKYCNSQVRV 209
G K++ PL I K +++ GYD D++ VV +C+ K+ + +
Sbjct: 418 GVHKVV-PLSPIFFNKDAVFFTLLCGFGYDPSTDDFLVV-HACYNP-----KHQANCAEI 576
Query: 210 HTLGTNFWRRIP--NFPSNIMGLPNGY--VGKFVSGTINWAIENQKNYDSWVILSLDL 263
+L N W+ I +FP N Y G F++G I+W + + N VI++ DL
Sbjct: 577 FSLRANAWKGIEGIHFPYTHFRYTNRYNQFGSFLNGAIHW-LAFRINASINVIVAFDL 747
>TC223618
Length = 444
Score = 73.6 bits (179), Expect = 2e-13
Identities = 42/127 (33%), Positives = 66/127 (51%)
Frame = +1
Query: 114 NFRLNPSDNHPIMIDSCDGIICFENRNDNHVDLVVWNPCTGKFKILPPLENIPNGKTHTL 173
N+ + H ++ SC+G++CF + D +++WNP K PPL N T
Sbjct: 91 NYPVKNKFRHDGIVGSCNGLLCFAIKGDC---VLLWNPSIRVSKKSPPLGNNWRPGCFTA 261
Query: 174 YSIGYDRFVDNYKVVAFSCHRQINKSYKYCNSQVRVHTLGTNFWRRIPNFPSNIMGLPNG 233
+ +GYD ++YKVVA C + S + +V+V+++ TN WR+I +FP N
Sbjct: 262 FGLGYDHVNEDYKVVAVFC----DPSEYFIECKVKVYSMATNSWRKIQDFPHGFSPFQNS 429
Query: 234 YVGKFVS 240
GKFVS
Sbjct: 430 --GKFVS 444
>TC234332
Length = 644
Score = 71.2 bits (173), Expect = 8e-13
Identities = 51/148 (34%), Positives = 77/148 (51%), Gaps = 15/148 (10%)
Frame = +2
Query: 236 GKFVSGTINW-AIENQKNYDSW--------VILSLDLGNESYQEISRPDFGLDDPVHIFT 286
G V GT+NW A+ N + W VI S DL NESY+ + PD L+ P
Sbjct: 20 GASVRGTVNWLALPNSSSDYQWETVTIDDLVIFSYDLKNESYRYLLMPDGLLEVPHSPPE 199
Query: 287 LGVSKDCLCVLV-YTETLLGIWVMKDYGNKNSWTKLFAVPYAKVGYHGFGFVD---LHYI 342
L V K CLC+ + G W+MK++G + SWT+ + Y ++ HG GF+D + +
Sbjct: 200 LVVLKGCLCLSHRHGGNHFGFWLMKEFGVEKSWTRFLNISYDQLHIHG-GFLDHPVILCM 376
Query: 343 SEEDDQVFLH--FCSKVYVYNYKNSTVK 368
SE+D V L K +YN +++T++
Sbjct: 377 SEDDGVVLLENGGHGKFILYNKRDNTIE 460
>TC211805 similar to UP|Q9K6E7 (Q9K6E7) BH3782 protein, partial (13%)
Length = 693
Score = 62.4 bits (150), Expect = 4e-10
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Frame = +1
Query: 287 LGVSKDCLCVLV-YTETLLGIWVMKDYGNKNSWTKLFAVPYAKVGYHGFGFVDLHYISEE 345
LGV + CLC+ Y +T +W+MKDYG + SW KL ++PY F + +YIS E
Sbjct: 4 LGVLQGCLCMNYDYKKTHFVVWMMKDYGARESWVKLVSIPYVP-NPENFSYSGPYYIS-E 177
Query: 346 DDQVFLHFCSKVYVYNYKNSTVKTLDIQGQPSILYNSSRVYFESLYDSSGVYVESLISP 404
+ +V L F + +YN ++++ K I+ S + +F+ + VYVE+L+SP
Sbjct: 178 NGEVLLMFEFDLILYNPRDNSFKYPKIE--------SGKGWFD-----AEVYVETLVSP 315
>TC228687 similar to UP|Q9FGY4 (Q9FGY4) Gb|AAF30317.1, partial (79%)
Length = 1228
Score = 60.5 bits (145), Expect = 1e-09
Identities = 90/367 (24%), Positives = 154/367 (41%), Gaps = 14/367 (3%)
Frame = +1
Query: 50 VKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRPYHLLIRNSELLLVDSRLPSVTAIIP 109
VKSL K V K L D FV+ + +S+ P L+ + DS + I
Sbjct: 1 VKSLFRFKTVCKLWYRLSLDKYFVQLYNEVSRKNPMILVE------ISDSSESKTSLICV 162
Query: 110 DTTHN---FRLNPSDNHPIMIDSCDGIICFENRNDNHVDLVVWNPCTGKFKILPPLEN-- 164
D F ++ + SC+G++C + D V V NP T ++++LP
Sbjct: 163 DNLRGVSEFSFIFLNDRVKVRASCNGLLCCSSIPDKGV-FYVCNPVTREYRLLPKSRERH 339
Query: 165 ----IPNGKTHTLYSIGYDRFVDNYKVVAFSCHRQINKSYKYCNSQV-RVHTLGTNFWRR 219
P+G+ TL + D + VV HR ++ S + V N WR+
Sbjct: 340 VTRFYPDGEA-TLVGLACDSAYRKFNVVLAGYHRMFG--HRPDGSFICLVFDSELNKWRK 510
Query: 220 IPNFPSNIMGLPNGYVGKFVSGTINWAIENQKNYDSWVILSLDLGNESYQEISRP-DFGL 278
+F + N FV+ ++W + S IL LDL E ++++ P D
Sbjct: 511 FVSFQDDHFTHMNKNQVVFVNNALHWLTAS-----STYILVLDLSCEVWRKMQLPYDLIC 675
Query: 279 DDPVHIFTLGVSKDCLCVLVYTETLLGIWVMKDYGNKNSWTKLFAVPYAKVGYHGFGFV- 337
I+ L CL V+ +E + IWV+KDY K+ W + V + G V
Sbjct: 676 GTGNRIYLLDFD-GCLSVIKISEAWMNIWVLKDYW-KDEWCMVDKVSLRCIR----GMVP 837
Query: 338 DLHYISEEDDQVFLHFCSKVYVYNYKNSTVKTL-DIQGQPSI-LYNSSRVYFESLYDSSG 395
+ IS+ + VFL ++ VY+ K K + ++ + ++ L+ S+ Y +++ +
Sbjct: 838 GIFPISQTGECVFLATHKQILVYHRKTQIWKEMYSVKYRSTLPLWFSAHAYRSTMFSCN* 1017
Query: 396 VYVESLI 402
V + +I
Sbjct: 1018VMLYCII 1038
>TC233794 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {Arabidopsis
thaliana;} , partial (9%)
Length = 449
Score = 57.4 bits (137), Expect = 1e-08
Identities = 43/123 (34%), Positives = 58/123 (46%), Gaps = 10/123 (8%)
Frame = +1
Query: 22 RKQNSSDPFGLFALLWLDLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQ 81
+KQN S L +L EIL RLPVKSLL KCV KS SLISDP+FV H L+
Sbjct: 82 KKQNQS-----LTTLPQELIREILLRLPVKSLLRFKCVCKSFLSLISDPQFVISHYALAA 246
Query: 82 TRPYHLLIRNSELLLVDSRLPSVTAIIPDTTHNF----------RLNPSDNHPIMIDSCD 131
+ + L++R+ + SV F RL+ P ++ SC
Sbjct: 247 SPTHRLILRSHDFYAQSIATESVFKTCSRDVVYFPLPLPSIPCLRLDDFGIRPKILGSCR 426
Query: 132 GII 134
G++
Sbjct: 427 GLV 435
>BM121480
Length = 917
Score = 52.8 bits (125), Expect = 3e-07
Identities = 69/300 (23%), Positives = 115/300 (38%), Gaps = 6/300 (2%)
Frame = +3
Query: 7 HSKRKHRHNVVSTTVRKQNSSDPFGLFALLWLDLFLEILYRLPVKSLLVLKCVSKSLNSL 66
H K++ + ++ +KQN S L +L EIL RLPVKSLL KCV S
Sbjct: 6 HEKKERKRSMK----KKQNQS-----LTTLPQELIREILLRLPVKSLLRFKCVLFKTCS- 155
Query: 67 ISDPKFVKHHLHLSQTRPYHLLIRNSELLLVDSRLPSVTAIIPDTTHNFRLNPSDNHPIM 126
+++ LPS+ + RL+ P +
Sbjct: 156 -------------------------RDVVYFPLPLPSIPCL--------RLDDFGIRPKI 236
Query: 127 IDSCDGIICFENRNDNHVDLVVWNPCTGKFKILPPLENIPNGKTHTLYSIGYDRFVDNYK 186
+ SC G++ D+ +L++WNP G+ K LP N + T Y GYD D Y
Sbjct: 237 LGSCRGLVLLYY--DDSANLILWNPSLGRHKXLP---NYRDDITSFPYGFGYDESKDEYL 401
Query: 187 VVAFSCHRQINKSYKYCNSQVRVHTLGTNFWR--RIPNFPSNIMGLPN--GYVGKFVSGT 242
++ + + + +++ T W+ I P + G ++G
Sbjct: 402 LILIGLPKFGPE------TGADIYSFKTESWKTDTIVYDPLXRYXAEDXIARAGSLLNGA 563
Query: 243 INWAIENQKNYDSWVILSLDLGNESYQEISRP--DFGLDDPVHIFTLGVSKDCLCVLVYT 300
++W + ++ D VI++ DL + I P D ++ L + CL V T
Sbjct: 564 LHWFVFSESKXDH-VIIAFDLVERTLSXIPLPLADRSTVQKDAVYGLKIMGXCLXVCCST 740
>BM143422
Length = 424
Score = 50.1 bits (118), Expect = 2e-06
Identities = 30/57 (52%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +1
Query: 38 LDLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRPYH-LLIRNSE 93
LDL IL +LPVKS+ KCV KS SLISDP+F H L+ P H LL+R++E
Sbjct: 235 LDLIELILLKLPVKSVTRFKCVCKSWLSLISDPQFGFSHFDLALAVPSHRLLLRSNE 405
>TC216704 similar to UP|Q7PIN1 (Q7PIN1) ENSANGP00000023661 (Fragment),
partial (5%)
Length = 1232
Score = 49.7 bits (117), Expect = 2e-06
Identities = 37/144 (25%), Positives = 68/144 (46%), Gaps = 3/144 (2%)
Frame = +2
Query: 238 FVSGTINWAIENQKNYDSW-VILSLDLGNESYQEISRPDFGLDDPVHIFTLGVSKDCLCV 296
FV +++W + + D +I++ DL +E + E+ PD G + + D LC+
Sbjct: 2 FVGNSLHWVVTRKLEPDQPDLIVAFDLTHEIFTELPLPDTGGVGGGFEIDVALLGDSLCM 181
Query: 297 LV-YTETLLGIWVMKDYGNKNSWTKLFAV-PYAKVGYHGFGFVDLHYISEEDDQVFLHFC 354
V + + + +WVM++Y +SW KLF + A V L Y S+ + + H
Sbjct: 182 TVNFHNSKMDVWVMREYNRGDSWCKLFTLEESA*VEIVQXCLRPLGYSSDGNKVLLEHDR 361
Query: 355 SKVYVYNYKNSTVKTLDIQGQPSI 378
++ Y+ V + IQG P++
Sbjct: 362 KRLCWYDLGKKEVTLVRIQGLPNL 433
>BG404995 similar to GP|22831068|dbj OJ1131_E05.32 {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 394
Score = 48.5 bits (114), Expect = 5e-06
Identities = 36/102 (35%), Positives = 50/102 (48%), Gaps = 2/102 (1%)
Frame = +1
Query: 39 DLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRPYHLLIRNSELLLVD 98
++ EIL RLPV+SLL + SKS SLI +H L TR L S +L VD
Sbjct: 49 EVLTEILSRLPVRSLLRFRSTSKSWKSLIDS----QHLNWLHLTRSLTLASNTSLILRVD 216
Query: 99 SRL--PSVTAIIPDTTHNFRLNPSDNHPIMIDSCDGIICFEN 138
S L + + P + N L N ++ SC+G++C N
Sbjct: 217 SDLYQTNFPTLDPPVSLNHPLMCYSNSITLLGSCNGLLCISN 342
>TC227645 similar to UP|Q9FZK1 (Q9FZK1) F17L21.13, partial (61%)
Length = 1671
Score = 46.6 bits (109), Expect = 2e-05
Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 5/198 (2%)
Frame = +3
Query: 39 DLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRPYHLLIRNSELLLVD 98
DLF ++ RLP+ + + V + NS+++ F +H ++Q P+ I + +
Sbjct: 372 DLFEAVIARLPISTFFRFRSVCRQWNSMLNSQSFSQHCTQVTQENPWFYTITHENVNSGA 551
Query: 99 SRLPSVTAIIPDTTHNFRLNPSDNHPIMIDSCDGIICFENRNDNHVDLVVWNPCTGKFKI 158
PS+ T P+ + + S G++CF + H + V NP T FK
Sbjct: 552 MYDPSLKKWHHPT---ISTPPTKLIVLPVASAGGLVCF--LDIGHRNFFVCNPLTQSFKE 716
Query: 159 LP-----PLENIPNGKTHTLYSIGYDRFVDNYKVVAFSCHRQINKSYKYCNSQVRVHTLG 213
LP + G T S+G YK++ + C+ + V+
Sbjct: 717 LPVRSVKVWSRVAVGMTTNGNSVG-----SGYKIL-----------WVGCDGEYEVYDSV 848
Query: 214 TNFWRRIPNFPSNIMGLP 231
N W R N P+ M LP
Sbjct: 849 RNSWSRPGNMPAG-MKLP 899
>AI443156
Length = 414
Score = 46.6 bits (109), Expect = 2e-05
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Frame = +3
Query: 34 ALLWLDLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRPYHLLIRN-S 92
A L +++ EIL RLPVKS++ L+ K S+I F+ HL+ S T L++R+ S
Sbjct: 84 ANLPVEVVTEILSRLPVKSVIRLRSTCKWWRSIIDSRHFILFHLNKSHT---SLILRHRS 254
Query: 93 ELLLVDSRLPSVTAIIPDTTHNFRLNPSD-NHPIM--------IDSCDGIICFENRNDNH 143
+L +D + + + P NP + +HP+M + S +G++C N D
Sbjct: 255 QLYSLDLK----SLLDP--------NPFELSHPLMCYSNSIKVLGSSNGLLCISNVXD-- 392
Query: 144 VDLVVWNP 151
D+ +WNP
Sbjct: 393 -DIALWNP 413
>TC213957 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {Arabidopsis
thaliana;} , partial (9%)
Length = 696
Score = 46.2 bits (108), Expect = 3e-05
Identities = 31/64 (48%), Positives = 36/64 (55%)
Frame = +3
Query: 26 SSDPFGLFALLWLDLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRPY 85
S + L L L+L EIL R PV+S+L KCV KS SLISDP+F L S P
Sbjct: 3 SMEKHTLSVTLPLELIREILLRSPVRSVLRFKCVCKSWLSLISDPQFTHFDLAAS---PT 173
Query: 86 HLLI 89
H LI
Sbjct: 174HRLI 185
>AW395660
Length = 381
Score = 45.1 bits (105), Expect = 6e-05
Identities = 27/56 (48%), Positives = 34/56 (60%)
Frame = +3
Query: 19 TTVRKQNSSDPFGLFALLWLDLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVK 74
++V+KQ L +L +EIL RLPVKSLL +CV KS SLI DP F+K
Sbjct: 213 SSVQKQQGMSESLPLPFLPDELVVEILSRLPVKSLLQFRCVCKSWMSLIYDPYFMK 380
>TC233972 weakly similar to GB|AAP37713.1|30725382|BT008354 At3g23880
{Arabidopsis thaliana;} , partial (10%)
Length = 631
Score = 44.3 bits (103), Expect = 1e-04
Identities = 27/74 (36%), Positives = 37/74 (49%)
Frame = -2
Query: 39 DLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRPYHLLIRNSELLLVD 98
++ +EIL RLPVKSL K V KS SLIS+P F K H + LL N +
Sbjct: 531 EIIIEILLRLPVKSLPSFKFVCKS*LSLISNPHFAKWHFERNAAHTEKLLFVNPSWVPKV 352
Query: 99 SRLPSVTAIIPDTT 112
++ ++P T
Sbjct: 351 QSFMTIRLVLPPQT 310
>TC219822 homologue to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
(Centromere protein B) (CENP-B), partial (5%)
Length = 710
Score = 42.7 bits (99), Expect = 3e-04
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = +1
Query: 40 LFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLS 80
L +EIL + V + L L+CV K SL+ DP+FVK HLH S
Sbjct: 208 LMIEILVWIRVSNPLQLRCVCKRWKSLVVDPQFVKKHLHTS 330
>TC213823
Length = 407
Score = 42.0 bits (97), Expect = 5e-04
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +1
Query: 345 EDDQVFLHFCSKVYVYNYKNSTVKTLDIQGQPSILYNSSRVYFESLYDSSGVYVESLISP 404
EDDQV + F S++ VYN +N T K DIQ +Y +Y + VY+ESLISP
Sbjct: 55 EDDQVLMEFNSELAVYNSRNGTSKIPDIQD----------IY---MYMTPEVYIESLISP 195
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.140 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,615,138
Number of Sequences: 63676
Number of extensions: 384489
Number of successful extensions: 1973
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 1950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1960
length of query: 404
length of database: 12,639,632
effective HSP length: 99
effective length of query: 305
effective length of database: 6,335,708
effective search space: 1932390940
effective search space used: 1932390940
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC122729.3