TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122729.1 - phase: 0 /pseudo
         (119 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CF922226                                                               44  1e-05
TC225949 similar to UP|O23292 (O23292) Ankyrin like protein, par...    27  1.0
AW760164 similar to GP|11994422|dbj oxidoreductase  short-chain ...    26  3.0
TC206019 weakly similar to UP|Q9FHH2 (Q9FHH2) 101 kDa heat shock...    25  5.2
BG507696                                                               25  5.2
CB063439                                                               25  6.7
BQ453609 homologue to GP|13605607|gb| T3B23.2/T3B23.2 {Arabidops...    24  8.8
TC203330 homologue to UP|O23628 (O23628) Histone H2A.F/Z (At3g54...    24  8.8
BE190848                                                               24  8.8

>CF922226 
          Length = 667

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 19/36 (52%), Positives = 30/36 (82%), Gaps = 1/36 (2%)
 Frame = -3

Query: 77  FNKILDNLENIEVHLEDEDKVILLLC-IPKSFESFR 111
           FNK++ +LENI+V ++DED+ +LLLC +PKS+  F+
Sbjct: 569 FNKLILDLENIDVTIDDEDQALLLLCYLPKSYSHFK 462


>TC225949 similar to UP|O23292 (O23292) Ankyrin like protein, partial (49%)
          Length = 1729

 Score = 27.3 bits (59), Expect = 1.0
 Identities = 12/31 (38%), Positives = 23/31 (73%), Gaps = 1/31 (3%)
 Frame = -1

Query: 80   ILDNLENIEVHL-EDEDKVILLLCIPKSFES 109
            +L +LE  + +L E+E+ +++L C+PK+F S
Sbjct: 1465 VLRSLEAADNNL*ENENAMVILFCVPKAFTS 1373


>AW760164 similar to GP|11994422|dbj oxidoreductase  short-chain
           dehydrogenase/reductase family-like protein {Arabidopsis
           thaliana}, partial (9%)
          Length = 428

 Score = 25.8 bits (55), Expect = 3.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 9   MADKATSLIVLCLVDKVSIDVKKETTMHG 37
           +  KA + I+L L DKV   V KETT  G
Sbjct: 237 LLQKAYNAIILSLGDKVLRQVSKETTAVG 323


>TC206019 weakly similar to UP|Q9FHH2 (Q9FHH2) 101 kDa heat shock protein;
           HSP101-like protein, partial (6%)
          Length = 1013

 Score = 25.0 bits (53), Expect = 5.2
 Identities = 20/71 (28%), Positives = 32/71 (44%), Gaps = 2/71 (2%)
 Frame = +1

Query: 29  VKKETTMH--GGHVGKVGVIVYDQVFDS*TIPKTKFLLIKYEVK*SHHEEFNKILDNLEN 86
           V+ E   H  GG +  V   + D V D+       F L++     S  + F+ ++ N  +
Sbjct: 349 VEHEDNYHDVGGSLSAVPRELLDSVDDAIVFKPLNFDLLRRNFSSSIAKRFSSVVGNGVS 528

Query: 87  IEVHLEDEDKV 97
           IEV  E  DK+
Sbjct: 529 IEVQGEALDKI 561


>BG507696 
          Length = 201

 Score = 25.0 bits (53), Expect = 5.2
 Identities = 9/17 (52%), Positives = 13/17 (75%)
 Frame = -1

Query: 80 ILDNLENIEVHLEDEDK 96
          I DNL N+E+HL ++ K
Sbjct: 81 IADNLLNVEIHLSEQTK 31


>CB063439 
          Length = 404

 Score = 24.6 bits (52), Expect = 6.7
 Identities = 11/29 (37%), Positives = 19/29 (64%), Gaps = 3/29 (10%)
 Frame = -2

Query: 15  SLIVLCLVDKVSIDVKK---ETTMHGGHV 40
           S +VLC +D +S++++    +T  H GHV
Sbjct: 244 SKVVLCQLDYLSVNIQSIQVKTPQHFGHV 158


>BQ453609 homologue to GP|13605607|gb| T3B23.2/T3B23.2 {Arabidopsis
           thaliana}, partial (11%)
          Length = 405

 Score = 24.3 bits (51), Expect = 8.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 83  NLENIEVHLEDEDKVILLLCIPKSF 107
           + ++I VH+    + + +LCI KSF
Sbjct: 385 SFDDINVHILGHPRKVFILCIYKSF 311


>TC203330 homologue to UP|O23628 (O23628) Histone H2A.F/Z (At3g54560),
           complete
          Length = 722

 Score = 24.3 bits (51), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (56%)
 Frame = -3

Query: 15  SLIVLCLVDKVSIDVKKETTMHGGHVGK 42
           S I+ C VD+  +DV+ +TT   G   K
Sbjct: 468 SSILGCFVDQGLVDVRNDTTTSNGPFNK 385


>BE190848 
          Length = 392

 Score = 24.3 bits (51), Expect = 8.8
 Identities = 11/31 (35%), Positives = 19/31 (60%)
 Frame = +3

Query: 72  SHHEEFNKILDNLENIEVHLEDEDKVILLLC 102
           S+  EF ++    ENIE HLE++  +  ++C
Sbjct: 9   SYTAEFFELDPCTENIETHLEEKTNMTDVVC 101


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.330    0.144    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,268,770
Number of Sequences: 63676
Number of extensions: 44145
Number of successful extensions: 233
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of query: 119
length of database: 12,639,632
effective HSP length: 95
effective length of query: 24
effective length of database: 6,590,412
effective search space: 158169888
effective search space used: 158169888
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)