TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122728.13 + phase: 0 
         (164 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC233684                                                              281  8e-77
TC221544                                                               34  0.027
TC231960                                                               28  1.5
TC232323 UP|PUR1_SOYBN (P52418) Amidophosphoribosyltransferase, ...    27  4.4
BM143205 homologue to GP|6970430|dbj| E1 {Human papillomavirus t...    26  7.5
TC209284                                                               26  7.5
TC208560 weakly similar to GB|AAR24685.1|38603880|BT010907 At4g3...    26  7.5
TC218813                                                               26  9.8

>TC233684 
          Length = 943

 Score =  281 bits (720), Expect = 8e-77
 Identities = 139/172 (80%), Positives = 154/172 (88%), Gaps = 8/172 (4%)
 Frame = +2

Query: 1   MKLVFESEKAEWIGTDKVIGCGFDPRQKKVFFTLDSELMHVVHCQTEEFSTPLYPTLAAN 60
           MKLV ESEKAEW+GTD+VIGCGFDPRQKKVFFTLDSELMHV+HCQTEEF TPL+P LAAN
Sbjct: 131 MKLVSESEKAEWVGTDRVIGCGFDPRQKKVFFTLDSELMHVIHCQTEEFGTPLFPILAAN 310

Query: 61  IDIMVLVNFGQNAFKYAPANAQRTPNPCLVSPLVSSPAA-IGYDDDSKELFSMGRIDSHW 119
           IDI+VLVNFGQ+AFKYAPANAQRTPNPC ++PLV+SPAA IGY DDSKELFS+GRIDS W
Sbjct: 311 IDILVLVNFGQSAFKYAPANAQRTPNPCFIAPLVNSPAATIGY-DDSKELFSIGRIDSQW 487

Query: 120 LNRTTTKGSHNNGNNIS-------TMDFDEESEADLFEIVIDGSRKSPSTTS 164
           LNR+ TKGSHNNGNN +       T+DFDEESEADLFEIV+DGS KSP+T S
Sbjct: 488 LNRSXTKGSHNNGNNNNNNNNNNRTLDFDEESEADLFEIVLDGSGKSPNTAS 643


>TC221544 
          Length = 777

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 18  VIGCGFDPRQKKVFFTLDSELMHVVHCQTEEFSTPLYPTLAANI-DIMVLVNFGQNAFKY 76
           V+G G +   ++ FFT +    HVV    ++   PL+PT+A +  +  V VNFGQ  F +
Sbjct: 494 VVGAGINYAAQEFFFTKNG---HVVGSVYKDMKGPLFPTVAVHSQNEEVHVNFGQKPFTF 664


>TC231960 
          Length = 662

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 114 RIDSHWLNRTTTKGSHNNGNNIST 137
           R+  HW++R+T+ G H+ G  + T
Sbjct: 201 RLRYHWVHRSTSDGGHDQGYKVGT 272


>TC232323 UP|PUR1_SOYBN (P52418) Amidophosphoribosyltransferase, chloroplast
            precursor  (Glutamine phosphoribosylpyrophosphate
            amidotransferase) (ATASE) (GPAT) , partial (72%)
          Length = 1231

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
 Frame = +3

Query: 67   VNFGQNAF----KYAPANAQRTPNPC---LVSPLVSSPAAIGYDDDSKELFSMGRIDSHW 119
            V FG++ +    K+    A  +P  C   +  P     AA+GY   +   F  G I SH+
Sbjct: 909  VVFGRSVYESRKKFGEILASESPVECDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHY 1088

Query: 120  LNRTTTKGSHNNGNNISTMDFDEESEADLFEIVIDGSR 157
            + RT  + S          DF  + +      V++G R
Sbjct: 1089 VGRTFIEPSQ------KIRDFGVKLKLSPVHAVLEGKR 1184


>BM143205 homologue to GP|6970430|dbj| E1 {Human papillomavirus type 82},
           partial (1%)
          Length = 379

 Score = 26.2 bits (56), Expect = 7.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 113 GRIDSHWLNRTTTKGSHNNGNNISTMDF 140
           G I SH+   TT   + NNGNN S ++F
Sbjct: 157 GGIGSHFGAITTPLLARNNGNNTSDVEF 240


>TC209284 
          Length = 821

 Score = 26.2 bits (56), Expect = 7.5
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = +3

Query: 80  NAQRTPNPCLVSPLVSSPAAIGYDDDSKELFSMGRIDSHWLNRTTTKGSHNNGNNI 135
           N   TPNP L+  +V  P AIG    S       R+D     R T KG     +NI
Sbjct: 318 NLTLTPNPRLLGRVVFLPLAIGMI*TSLHF----RVD*GGRKRETRKGKDRRVSNI 473


>TC208560 weakly similar to GB|AAR24685.1|38603880|BT010907 At4g32960
           {Arabidopsis thaliana;} , partial (15%)
          Length = 501

 Score = 26.2 bits (56), Expect = 7.5
 Identities = 11/29 (37%), Positives = 18/29 (61%)
 Frame = +1

Query: 73  AFKYAPANAQRTPNPCLVSPLVSSPAAIG 101
           +F  +  N+  TPN  L SPL  +P+++G
Sbjct: 262 SFSSSMPNSPSTPNTVLPSPLSPTPSSLG 348


>TC218813 
          Length = 776

 Score = 25.8 bits (55), Expect = 9.8
 Identities = 15/56 (26%), Positives = 22/56 (38%)
 Frame = +3

Query: 22  GFDPRQKKVFFTLDSELMHVVHCQTEEFSTPLYPTLAANIDIMVLVNFGQNAFKYA 77
           G  P+Q    F  +     V HC  +   T L   LA  +  + + N G + F  A
Sbjct: 93  GHQPQQNNPVFHNNIPNRTVTHCSVDPLDTSLCQNLAMQLSPLDVFNEGGSQFPLA 260


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.316    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,672,728
Number of Sequences: 63676
Number of extensions: 80008
Number of successful extensions: 443
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of query: 164
length of database: 12,639,632
effective HSP length: 90
effective length of query: 74
effective length of database: 6,908,792
effective search space: 511250608
effective search space used: 511250608
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)