BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122726.12 + phase: 0
(280 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI423934 185 2e-47
AW349475 150 4e-41
BF068579 69 3e-12
TC220112 similar to UP|Q7XA06 (Q7XA06) Synaptotagmin C, partial ... 40 0.002
TC204730 similar to UP|Q8LQF0 (Q8LQF0) OJ1529_G03.6 protein, par... 39 0.003
TC228761 similar to GB|AAP68261.1|31711810|BT008822 At4g21160 {A... 37 0.008
TC227978 similar to GB|CAE85115.1|39918793|AJ617630 synaptotagmi... 34 0.084
TC233960 similar to UP|OPSD_SEPOF (O16005) Rhodopsin, partial (10%) 33 0.11
TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety... 33 0.14
TC225554 similar to GB|AAO44032.1|28466847|BT004766 At5g47710 {A... 32 0.32
TC218783 similar to UP|Q40363 (Q40363) NuM1 protein, partial (19%) 31 0.55
TC228905 weakly similar to UP|Q7XIV3 (Q7XIV3) Zinc finger and C2... 31 0.71
CF806534 30 0.93
TC213757 30 0.93
TC204549 similar to UP|Q9M0X5 (Q9M0X5) Receptor protein kinase-l... 30 1.2
TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete 30 1.2
TC205629 similar to UP|Q9LEX1 (Q9LEX1) CaLB protein (At3g61050),... 30 1.6
TC217636 homologue to UP|O04235 (O04235) Transcription factor, p... 29 2.1
TC234499 weakly similar to UP|Q94A53 (Q94A53) At1g12830/F13K23_6... 29 2.1
TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 29 2.1
>BI423934
Length = 394
Score = 185 bits (470), Expect = 2e-47
Identities = 100/123 (81%), Positives = 103/123 (83%), Gaps = 3/123 (2%)
Frame = +3
Query: 33 VILSLGDQTIRSKKNSQTTVIG---WRPWNANLESAPQDFHMLVSNPKKQKLSIQVKDAL 89
VILSLG+Q IRSKKNSQTTVIG WN QDFHMLVSNP+KQKL IQVKD L
Sbjct: 27 VILSLGNQVIRSKKNSQTTVIGPPGMPIWN-------QDFHMLVSNPRKQKLFIQVKDVL 185
Query: 90 GFADLTIGTGEVDLGSLQDTVPTDRIVALQGGWGFLRKGLSGEILLRLTYKAYVEDEEDD 149
GFADLTIGTGEVDLGSL+DTVPTDRIV LQGGWGFL K SGEILLRLTYKAYVEDEEDD
Sbjct: 186 GFADLTIGTGEVDLGSLKDTVPTDRIVVLQGGWGFLGKRSSGEILLRLTYKAYVEDEEDD 365
Query: 150 KTE 152
KTE
Sbjct: 366 KTE 374
>AW349475
Length = 640
Score = 150 bits (380), Expect(3) = 4e-41
Identities = 79/111 (71%), Positives = 91/111 (81%)
Frame = -1
Query: 170 EANVTDKTGVRESAYPTDKESFMDVLAAIIVSEEFQGIVASETGFTKGLDNGSNTGSKAS 229
EAN + R+S Y TDKESFM+VLAA+IVSEEFQGIVASETGF+K LDNGSN GS+ S
Sbjct: 538 EANGXNGKDERDSVYETDKESFMNVLAALIVSEEFQGIVASETGFSKVLDNGSNVGSRVS 359
Query: 230 KSPVANAESIPPSADNSEGSSGGSALFWLAVITSIAVLIAVNISGSSIFNP 280
S V N E IP S+DNSEG SGGSAL WLAVITSI++LIA+N+ GSS+FNP
Sbjct: 358 NSQVPNVEPIPSSSDNSEG-SGGSALLWLAVITSISLLIALNVGGSSLFNP 209
Score = 34.3 bits (77), Expect(3) = 4e-41
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -2
Query: 136 RLTYKAYVEDEEDDKTE 152
RLTYKAYVED DDKTE
Sbjct: 639 RLTYKAYVEDXXDDKTE 589
Score = 21.2 bits (43), Expect(3) = 4e-41
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 150 KTEEDSIDIDVSDDEL 165
K D+ ID+SDDEL
Sbjct: 596 KLRVDAXYIDISDDEL 549
>BF068579
Length = 395
Score = 68.6 bits (166), Expect = 3e-12
Identities = 35/40 (87%), Positives = 37/40 (92%), Gaps = 1/40 (2%)
Frame = +3
Query: 2 QEGNMDSVGELSVTLVDARKLPY-FFGKTDPYVILSLGDQ 40
QEGN DSVGELSVTLVDARKL Y F+GKTDPYVILSLG+Q
Sbjct: 273 QEGNKDSVGELSVTLVDARKLSYIFYGKTDPYVILSLGNQ 392
>TC220112 similar to UP|Q7XA06 (Q7XA06) Synaptotagmin C, partial (76%)
Length = 1867
Score = 39.7 bits (91), Expect = 0.002
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 14/173 (8%)
Frame = +2
Query: 9 VGELSVTLVDARKLPYF--FGKTDPYVILSLGDQTIRSKKNSQTTVIGWRPWNANLESAP 66
VG L V +V A+KL G +DPYV LSL + +KK + WN
Sbjct: 875 VGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPAKKTTVKRKNLNPEWN------- 1033
Query: 67 QDFHMLVSNPKKQKLSIQVK--DALGFADLTIGTGEVDLGSLQDTVPTDRIVALQGGWGF 124
+ F ++V +P+ Q L +QV D +G D +G V L L+ + + L
Sbjct: 1034 EKFKIVVKDPQSQVLQLQVYDWDKVGGHD-KLGMQLVPLKVLKPYENKEFTLDLLKDTNL 1210
Query: 125 ---LRKGLSGEILLRLTYKAYVED-------EEDDKTEEDSIDIDVSDDELSD 167
K G+I++ LT+ + ED E +E IDI VSDDE+ +
Sbjct: 1211 NETPHKKPRGKIVVDLTFVPFKEDSNKFGGPSEGYSRKESGIDI-VSDDEVQE 1366
>TC204730 similar to UP|Q8LQF0 (Q8LQF0) OJ1529_G03.6 protein, partial (97%)
Length = 2084
Score = 38.5 bits (88), Expect = 0.003
Identities = 40/154 (25%), Positives = 69/154 (43%), Gaps = 7/154 (4%)
Frame = +1
Query: 9 VGELSVTLVDARKLPY--FFGKTDPYVILSLGDQTIRSKKNSQTTVIGWRPWNANLESAP 66
VG L V +V A KL G +DPYV L L ++ + SKK T + ++ N
Sbjct: 976 VGILHVKVVRAEKLKKKDLLGASDPYVKLKLTEEKLPSKK----TTVKYKNLNPEWN--- 1134
Query: 67 QDFHMLVSNPKKQKLSIQVKD--ALGFADLTIGTGEVDLGSLQDTVP---TDRIVALQGG 121
++F+++V +P+ Q L + V D +G D +G + L + P T ++
Sbjct: 1135 EEFNIVVKDPESQVLELTVYDWEQIGKHD-KMGMNVIPLKEITPDEPKAVTLNLLKTMDP 1311
Query: 122 WGFLRKGLSGEILLRLTYKAYVEDEEDDKTEEDS 155
G++ + + YK + EDE E+ +
Sbjct: 1312 NDPENAKSRGQLTVEVLYKPFKEDELPQSAEDSN 1413
>TC228761 similar to GB|AAP68261.1|31711810|BT008822 At4g21160 {Arabidopsis
thaliana;} , partial (48%)
Length = 729
Score = 37.4 bits (85), Expect = 0.008
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Frame = +1
Query: 6 MDSVGELSVTLVDARKLPYFFGKT-DPYVILSLGDQTIRSKKNSQTTVIGWRPWNANLES 64
++ +G L V ++ L K+ DPYV+LSLG QT+ QTT+I +NL
Sbjct: 22 VEFIGMLKVKVIKGTNLAIRDIKSSDPYVVLSLGQQTV------QTTII-----RSNLNP 168
Query: 65 APQDFHMLVSNPKKQKLSIQVKDALGF-ADLTIGTGEVDLGSL 106
+ +ML ++ ++V D F AD +G ++DL SL
Sbjct: 169 VWNEEYMLSVPEHYGQMKLKVFDHDTFSADDIMGEADIDLQSL 297
>TC227978 similar to GB|CAE85115.1|39918793|AJ617630 synaptotagmin
{Arabidopsis thaliana;} , partial (72%)
Length = 1470
Score = 33.9 bits (76), Expect = 0.084
Identities = 41/161 (25%), Positives = 65/161 (39%), Gaps = 16/161 (9%)
Frame = +2
Query: 9 VGELSVTLVDARKLPY--FFGKTDPYVILSLGDQTIRSKKNSQTTVIGWRPWNANLESAP 66
VG L V ++ A KL G +DPYV L L + SKK + WN
Sbjct: 374 VGILHVKVLQAMKLKKKDLLGASDPYVKLKLTEDKWPSKKTTVKHKNLNPQWN------- 532
Query: 67 QDFHMLVSNPKKQKLSIQV--------KDALGFADLTI------GTGEVDLGSLQDTVPT 112
++F+++V +P Q + I V D +G + + T L L++ P
Sbjct: 533 EEFNIVVKDPDSQVIEINVYDWEQVGKHDKMGMNVIPLKEVSPEETKRFTLDLLKNMDPN 712
Query: 113 DRIVALQGGWGFLRKGLSGEILLRLTYKAYVEDEEDDKTEE 153
D + G+I++ LTYK + E++ EE
Sbjct: 713 DA----------QNEKSRGQIVVELTYKPFKEEDLGKGFEE 805
>TC233960 similar to UP|OPSD_SEPOF (O16005) Rhodopsin, partial (10%)
Length = 862
Score = 33.5 bits (75), Expect = 0.11
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +2
Query: 27 GKTDPYVILSLGDQTIRSK-KNSQTTVIGWRPWNANLESAPQDFHMLVSNPKKQKLSIQV 85
G +DP+V G +++ KN + + WN +L+ F + + + LSI+V
Sbjct: 140 GTSDPFVHFKQGHMGVKTTVKNKELNPV----WNEDLQ-----FGIYEKDAQTGTLSIEV 292
Query: 86 KDALGFADLTIGTGEVDLGSLQDTVPTDRIVALQGG 121
D +D IGT +V L + P + V L GG
Sbjct: 293 LDKDMLSDDCIGTYKVSLSEVPHNQPREYDVHLTGG 400
>TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (24%)
Length = 808
Score = 33.1 bits (74), Expect = 0.14
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Frame = +1
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTE---EANVTDKTGVRESAYPTDKESFM-------D 193
ED +DD E+D D SD+E+ D + + DK E +P +K++ +
Sbjct: 178 EDSDDDSDEDD--DFGSSDEEMEDADSDSDDESDDKEDDDEETHPKNKKADLGKKRPNES 351
Query: 194 VLAAIIVSEEFQGIVASETGFTKGLDNGS-NTGSKASKSPVANAESIPPSADNSEGSSGG 252
+ S++ + +T KG + + K K+P + A++ P+ + SGG
Sbjct: 352 ASKTPVSSKKAKNATPEKTDGKKGGHTATPHPAKKGGKTPSSEAKAKTPNNEAKTPMSGG 531
>TC225554 similar to GB|AAO44032.1|28466847|BT004766 At5g47710 {Arabidopsis
thaliana;} , partial (95%)
Length = 1383
Score = 32.0 bits (71), Expect = 0.32
Identities = 17/40 (42%), Positives = 26/40 (64%), Gaps = 1/40 (2%)
Frame = +3
Query: 7 DSVGELSVTLVDARKLPYFFGKT-DPYVILSLGDQTIRSK 45
+ +G L V +V ++L KT DPYV+L LG+QT ++K
Sbjct: 291 EQLGLLKVIVVQGKRLVIRDFKTSDPYVVLKLGNQTAKTK 410
>TC218783 similar to UP|Q40363 (Q40363) NuM1 protein, partial (19%)
Length = 870
Score = 31.2 bits (69), Expect = 0.55
Identities = 27/104 (25%), Positives = 42/104 (39%), Gaps = 2/104 (1%)
Frame = +3
Query: 136 RLTYKAYVEDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRESAYPTD--KESFMD 193
R K D +D ++ED +D+ DD+ S E K V+ S +D +E D
Sbjct: 525 RAQKKVESSDSDDSSSDEDKGKMDIDDDDDSSDESEEPQKKKAVKNSKESSDSSEEDSED 704
Query: 194 VLAAIIVSEEFQGIVASETGFTKGLDNGSNTGSKASKSPVANAE 237
SEE + G + + + + KA K+PV E
Sbjct: 705 ------ESEEKPSKTPQKRGRDVEMVDAALSEKKAPKTPVTPRE 818
>TC228905 weakly similar to UP|Q7XIV3 (Q7XIV3) Zinc finger and C2 domain
protein-like, partial (85%)
Length = 819
Score = 30.8 bits (68), Expect = 0.71
Identities = 18/70 (25%), Positives = 36/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 29 TDPYVILSLGDQTIRSK--KNSQTTVIGWRPWNANLESAPQDFHMLVSNPKKQKLSIQVK 86
+DPYV++++GDQ ++++ KN+ WN L + +D + K + V
Sbjct: 117 SDPYVVVNMGDQKLKTRVVKNNCNP-----DWNEELTLSVKDVKTPIHLTVYDKDTFSVD 281
Query: 87 DALGFADLTI 96
D +G A++ +
Sbjct: 282 DKMGEAEIDL 311
>CF806534
Length = 512
Score = 30.4 bits (67), Expect = 0.93
Identities = 28/102 (27%), Positives = 44/102 (42%), Gaps = 3/102 (2%)
Frame = +3
Query: 8 SVGELSVTLVDARKLPY--FFGKTDPYVILSLGDQTIRSKKNSQTTVIGWRP-WNANLES 64
++G + V LV A+ L FG+ DPYV++ DQ RS S G P WN
Sbjct: 78 AIGFMEVQLVKAKGLHNADIFGEMDPYVLIQYNDQEQRS---SVAIGQGTNPVWNEKFMF 248
Query: 65 APQDFHMLVSNPKKQKLSIQVKDALGFADLTIGTGEVDLGSL 106
+ + + K KL ++ D + D +G + + L
Sbjct: 249 KVE----YLGSGDKHKLIFKIMDQDLYTDEFVGQATIHVKDL 362
>TC213757
Length = 403
Score = 30.4 bits (67), Expect = 0.93
Identities = 12/18 (66%), Positives = 17/18 (93%)
Frame = +1
Query: 263 SIAVLIAVNISGSSIFNP 280
SI++LIA+N+ GSS+FNP
Sbjct: 10 SISLLIALNVGGSSLFNP 63
>TC204549 similar to UP|Q9M0X5 (Q9M0X5) Receptor protein kinase-like protein,
partial (54%)
Length = 2032
Score = 30.0 bits (66), Expect = 1.2
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 224 TGSKASKSPVANAESIPPSADNSEGSSGGSALFWLAVITSIAVLIAVNISG 274
T S S SP PP++ S GSSG SA +A++ I V + + I G
Sbjct: 543 TASPPSSSPSPPTLLPPPTSPISPGSSGISAGTIVAIVVPITVAVLIFIVG 695
>TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete
Length = 1507
Score = 30.0 bits (66), Expect = 1.2
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +1
Query: 143 VEDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRES 182
+ED+ED++ +ED D D DDE D EE + T KT ++S
Sbjct: 1000 LEDDEDEEEDEDE-DEDEEDDEDEDDEEEDDT-KTKKKKS 1113
>TC205629 similar to UP|Q9LEX1 (Q9LEX1) CaLB protein (At3g61050), partial
(92%)
Length = 1766
Score = 29.6 bits (65), Expect = 1.6
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Frame = +1
Query: 10 GELSVTLVDARKLPYF--FGKTDPYVILSLGDQTIRSKKNSQTTVIGWR---PWNANLES 64
G+L++T+V A L GK+DPYV++ IR +T VI WN
Sbjct: 697 GKLALTVVKATALKNMEMIGKSDPYVVVH-----IRPLFKYKTKVIDNNLNPTWN----- 846
Query: 65 APQDFHMLVSNPKKQKLSIQVKDALGFADLTIGTGEVDLGSLQDTVPTDRIVALQ 119
+ F ++ + + Q L ++V D D +G ++ L L+ + T++ + L+
Sbjct: 847 --EKFELIAEDKETQSLILEVLDKDIGQDKRLGIAQLPLIDLE--IQTEKEIELR 999
>TC217636 homologue to UP|O04235 (O04235) Transcription factor, partial (45%)
Length = 1101
Score = 29.3 bits (64), Expect = 2.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGV---RESAYPTDKESFMDV 194
E ED+ EEDS + DDE S T+++ D E P KES D+
Sbjct: 377 EAGEDESDEEDSDFVADKDDEGSPTDDSGADDSDATDSGDEKEKPAKKESKKDL 538
>TC234499 weakly similar to UP|Q94A53 (Q94A53) At1g12830/F13K23_6, partial
(26%)
Length = 894
Score = 29.3 bits (64), Expect = 2.1
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 140 KAYVEDEEDDKTEEDSIDIDVSDDELSD 167
K +E+EEDD ++DS D SDD+ SD
Sbjct: 355 KMILEEEEDDDDDDDSDDGGDSDDDGSD 438
>TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 1090
Score = 29.3 bits (64), Expect = 2.1
Identities = 13/46 (28%), Positives = 23/46 (49%)
Frame = -1
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRESAYPTDKE 189
EDE++D ++D + D DD+ + E D+ G + D+E
Sbjct: 415 EDEDEDGDDQDDDEDDDDDDDDEEDEGGEEEDEDGAEDEENEEDEE 278
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.310 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,075,393
Number of Sequences: 63676
Number of extensions: 92876
Number of successful extensions: 738
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of query: 280
length of database: 12,639,632
effective HSP length: 96
effective length of query: 184
effective length of database: 6,526,736
effective search space: 1200919424
effective search space used: 1200919424
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC122726.12