BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122724.2 + phase: 0
(255 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC209077 weakly similar to UP|K2C1_HUMAN (P04264) Keratin, type ... 171 4e-43
BE346473 94 5e-20
TC221438 similar to UP|SR40_YEAST (P32583) Suppressor protein SR... 69 2e-12
AW509072 69 2e-12
TC210851 46 1e-05
BU765146 similar to GP|21322711|e pherophorin-dz1 protein {Volvo... 40 8e-04
TC228148 similar to UP|Q7YXC8 (Q7YXC8) C. elegans GRD-1 protein ... 40 0.001
TC228149 similar to UP|O02402 (O02402) Insoluble protein, partia... 38 0.005
TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding ... 37 0.011
TC208462 homologue to UP|LSM4_TOBAC (Q43582) Probable U6 snRNA-a... 36 0.015
TC229606 similar to UP|Q941Q3 (Q941Q3) Floral homeotic protein H... 36 0.015
TC217019 weakly similar to UP|Q94A32 (Q94A32) AT3g43520/T18D12_9... 35 0.033
TC214476 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 35 0.033
TC210426 similar to UP|Q9FK53 (Q9FK53) Similarity to GAR1 protei... 35 0.033
AI959820 similar to GP|14335118|gb| At1g30200/F12P21_1 {Arabidop... 35 0.033
CA783317 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 35 0.033
TC231450 35 0.043
TC211031 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 35 0.043
TC214511 weakly similar to PIR|C85356|C85356 glycine-rich protei... 34 0.057
TC207679 similar to UP|Q7XJI7 (Q7XJI7) Glycine-rich protein TomR... 34 0.057
>TC209077 weakly similar to UP|K2C1_HUMAN (P04264) Keratin, type II
cytoskeletal 1 (Cytokeratin 1) (K1) (CK 1) (67 kDa
cytokeratin) (Hair alpha protein), partial (4%)
Length = 887
Score = 171 bits (432), Expect = 4e-43
Identities = 110/264 (41%), Positives = 149/264 (55%), Gaps = 9/264 (3%)
Frame = +1
Query: 1 MNAIQVAASNPAIYV----RKNYQPHHFLSTPKGLSMNANPLSRTFLIPRAKLSSGLYCV 56
M+ I+VA P +Y + F STP L +P+S T L +A+ S L+C+
Sbjct: 82 MSVIRVAPCLPGVYAPPITSSQLRRRDFNSTPPSLPTAFDPISVTSLSLKAEPSPRLHCL 261
Query: 57 RQSATTAPVLKVYPSNLTQSVPVLKSQKPRHVCLAGGKGMMDNSEDSQRKSLEEAMK--- 113
LKS++P HVC AGG+ MM+N+ D Q KSL++AM
Sbjct: 262 HG---------------------LKSRQPLHVCFAGGQEMMENNGDFQSKSLQKAMGQLK 378
Query: 114 --SLQEKIQKGEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGGMSDETAQIVFATIGFM 171
S+++ +++ GGSG KPPGGRG GGGG SD S GS G MS+ET Q+V A++ F+
Sbjct: 379 GYSIEDILRQQIEKGGSGGKPPGGRGSGGGG--SDNSSGGSDG-MSNETLQVVLASVCFI 549
Query: 172 FVYIYVINGVELTKLARDFIKYLLGGTQSVRLKRASYKCSRFYKKITGQNEVDEDGLETG 231
+YI+VING+EL KLA+D IK++ G QSVRLK+A YK R YK I + E +GLE
Sbjct: 550 LMYIFVINGLELLKLAKDCIKFVSGRGQSVRLKQAVYKWVRIYKNIIEKMEAARNGLEKA 729
Query: 232 PLRWNIADFYRDVLRNYMKPNSNE 255
DF+R V R+ MK N E
Sbjct: 730 STCLLDHDFFRGVFRHNMKSNPEE 801
>BE346473
Length = 464
Score = 94.4 bits (233), Expect = 5e-20
Identities = 52/121 (42%), Positives = 76/121 (61%), Gaps = 5/121 (4%)
Frame = +1
Query: 66 LKVYPSNLTQSVPVLKSQKPRHVCLAG-GKGMMDNSEDS----QRKSLEEAMKSLQEKIQ 120
L+ PS Q P LKS++P VC A G+GMM+N+ ++ + +S+E+ ++ EK
Sbjct: 133 LRAEPSPRLQCQPALKSRRPLLVCFAASGQGMMENNREAMGQWKGQSIEDILRQQMEK-- 306
Query: 121 KGEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGGMSDETAQIVFATIGFMFVYIYVING 180
GGSG KPPGGRG GGG +S G +G MS+ET Q+V A++ F+ +YI+VING
Sbjct: 307 -----GGSGGKPPGGRGGGGGSDSSSGGSDG----MSNETLQVVLASVSFILMYIFVING 459
Query: 181 V 181
+
Sbjct: 460 L 462
>TC221438 similar to UP|SR40_YEAST (P32583) Suppressor protein SRP40, partial
(5%)
Length = 562
Score = 69.3 bits (168), Expect = 2e-12
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Frame = +3
Query: 180 GVELTKLARDFIKYLLGGTQSVRLKRASYKCSRFYKKITGQNEVDED-----GLETGPLR 234
G ELTKLARD+IKYL GG+QSVRLK A Y+ + Y+ +T Q E +++ + P
Sbjct: 3 GEELTKLARDYIKYLFGGSQSVRLKNAMYQWGQLYESMTAQKEEEDEYWLQKAILDTPTW 182
Query: 235 WNIADFYRDVLRNYMKPNSNE 255
W+ YR+ L+NY+ ++E
Sbjct: 183 WHDPADYREALKNYLLSGTDE 245
>AW509072
Length = 428
Score = 69.3 bits (168), Expect = 2e-12
Identities = 50/141 (35%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Frame = +1
Query: 1 MNAIQVAASNPAIYVRKNYQPHHFLSTPKGLSMNANPLSRTFLIPRAKLSSGLYCVRQSA 60
MN QV A P I V+ Q H S P + + PL+ L RA+ S C
Sbjct: 64 MNIAQVTAWQPGICVKNMSQLHRLQSKPCVIPKSFGPLTCVLLSLRARQSFSSKCW---- 231
Query: 61 TTAPVLKVYPSNLTQSVPVLKSQKPRHVCLAGGKGMMDNSEDSQRKSLEEAMKS------ 114
P+L+S+KP H+CLAGGKGMM N E+S KS+E+A+
Sbjct: 232 -----------------PILQSRKPLHICLAGGKGMMGNDENSPWKSIEKAIGKFKGESS 360
Query: 115 ----LQEKIQKGEY--SGGSG 129
L+ +I+KG Y SGG G
Sbjct: 361 IEDVLRRQIEKGVYYDSGGGG 423
>TC210851
Length = 459
Score = 46.2 bits (108), Expect = 1e-05
Identities = 38/113 (33%), Positives = 51/113 (44%), Gaps = 1/113 (0%)
Frame = +1
Query: 1 MNAIQVAASNPAIYVRKNYQPHHFLSTPKGLSMNANPLSRTFLIPRAKLSSGLYCVRQSA 60
MN QV A P I V+ Q H S P L + P ++ A
Sbjct: 166 MNIAQVTAWQPGICVKNISQLHRLQSKPCVLPNSFGPCLQSL----------------RA 297
Query: 61 TTAPVLKVYPSNLTQSVPVLKSQKPRHVCLAGGKGMMDN-SEDSQRKSLEEAM 112
T + K +PS L+S+KP H+CLA GKGMM N E+S K +E+A+
Sbjct: 298 TQSVSSKCWPS--------LQSRKPLHICLARGKGMMGNDDENSPWKFIEKAI 432
>BU765146 similar to GP|21322711|e pherophorin-dz1 protein {Volvox carteri f.
nagariensis}, partial (25%)
Length = 407
Score = 40.4 bits (93), Expect = 8e-04
Identities = 17/30 (56%), Positives = 19/30 (62%)
Frame = +1
Query: 126 GGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
GG G + GG G GGGGG +G EEG GG
Sbjct: 313 GGGGGRGGGGGGGGGGGGGGEGREEGGGGG 402
Score = 35.8 bits (81), Expect = 0.019
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = +3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G GG G GG GRGGGGG G G GG
Sbjct: 108 GGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGG 209
Score = 35.8 bits (81), Expect = 0.019
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = +2
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G GG G GG GRGGGGG G G GG
Sbjct: 53 GGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGG 154
Score = 35.8 bits (81), Expect = 0.019
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = +3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G GG G GGRG GGGGG G G GG
Sbjct: 114 GGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGG 215
Score = 34.3 bits (77), Expect = 0.057
Identities = 16/35 (45%), Positives = 17/35 (47%)
Frame = +1
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGGM 156
G GG G GG G GGGGG G G GG+
Sbjct: 112 GGGGGGGGGGGGGGEGGGGGGGGGGGGGGGGGGGV 216
Score = 33.5 bits (75), Expect = 0.097
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +1
Query: 127 GSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G G PGG G GGGGG G G GG
Sbjct: 1 GGGEVCPGGGGGGGGGGGGGGGGGGGGGG 87
Score = 33.1 bits (74), Expect = 0.13
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = +3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G GG G GG GRG GGG G G GG
Sbjct: 273 GGGGGGGGGXGGGGGGRGEGGGGGGGGGGGGGGG 374
Score = 33.1 bits (74), Expect = 0.13
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = +1
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G GG G GG G GGGGG G G GG
Sbjct: 259 GGGGGGGGGGGGGGXGGGGGGGGRGGGGGGGGGG 360
Score = 32.7 bits (73), Expect = 0.16
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = +1
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G GG G GGRG GGGG G G GG
Sbjct: 49 GGGGGGGGGGGGGGRGGEGGGGGGGGGGGGGGGG 150
Score = 32.7 bits (73), Expect = 0.16
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = +2
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G GG G GGRG GGGGG G G G
Sbjct: 59 GGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGKG 160
Score = 32.3 bits (72), Expect = 0.22
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = +2
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTG 154
GE GG G GG G GGGGG EEG G
Sbjct: 317 GEGGGGGGG---GGGGGGGGGGRGGRREEGGGG 406
Score = 32.3 bits (72), Expect = 0.22
Identities = 15/35 (42%), Positives = 17/35 (47%)
Frame = +2
Query: 121 KGEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
+GE G G + GG G GGGGG G G G
Sbjct: 221 RGERXXGRGGRGGGGGGGGGGGGGGGGGGGGGGEG 325
Score = 32.0 bits (71), Expect = 0.28
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +2
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGGMSDE 159
G + G GGRG GGGGG G G GG E
Sbjct: 209 GGFFRGERXXGRGGRGGGGGGGGGGGGGGGGGGGGGGE 322
Score = 31.6 bits (70), Expect = 0.37
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = +3
Query: 126 GGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
GG G PGG G GGGGG G G GG
Sbjct: 3 GGRGL--PGGGGGGGGGGGGGGGGGGGGGG 86
Score = 31.6 bits (70), Expect = 0.37
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTG 154
G GG GGRG GGGGG G G G
Sbjct: 279 GGGGGGGXGGGGGGRGEGGGGGGGGGGGGGGGG 377
Score = 30.4 bits (67), Expect = 0.82
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 121 KGEYSGGSGSKPPGGRGRGGGGGNSDGSE 149
+GE GG G GG G G GGG G E
Sbjct: 321 RGEGGGGGGGGGGGGGGGGEGGGRRGGGE 407
Score = 29.3 bits (64), Expect = 1.8
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G GG G GGR GGGG G G GG
Sbjct: 186 GGGGGGGGGGFLGGREXXGGGGEGGGGGGGGGGG 287
>TC228148 similar to UP|Q7YXC8 (Q7YXC8) C. elegans GRD-1 protein
(Corresponding sequence R08B4.1b), partial (3%)
Length = 1180
Score = 40.0 bits (92), Expect = 0.001
Identities = 22/71 (30%), Positives = 33/71 (45%)
Frame = +3
Query: 94 KGMMDNSEDSQRKSLEEAMKSLQEKIQKGEYSGGSGSKPPGGRGRGGGGGNSDGSEEGST 153
K + D +R + + +K ++ GGSG GG G GGGGG+S S+ G
Sbjct: 393 KSKAEGGPDKKRNAAADFLKRIKRNTSAEASKGGSGGS--GGGGSGGGGGSSSSSKGGGG 566
Query: 154 GGMSDETAQIV 164
G E ++V
Sbjct: 567 GNGVKEQKKMV 599
>TC228149 similar to UP|O02402 (O02402) Insoluble protein, partial (4%)
Length = 1008
Score = 37.7 bits (86), Expect = 0.005
Identities = 21/71 (29%), Positives = 33/71 (45%)
Frame = -2
Query: 94 KGMMDNSEDSQRKSLEEAMKSLQEKIQKGEYSGGSGSKPPGGRGRGGGGGNSDGSEEGST 153
K + D +R + + +K ++ GGSG G G GGGGG+S S+ G
Sbjct: 659 KSKAEGGADKKRSAAADFLKRIKRNTSAEASKGGSGGG--SGGGGGGGGGSSSSSKGGGG 486
Query: 154 GGMSDETAQIV 164
G + E ++V
Sbjct: 485 GNGAKEQKKMV 453
>TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein,
complete
Length = 748
Score = 36.6 bits (83), Expect = 0.011
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = +1
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G Y GG G GGR RG GGG G G GG
Sbjct: 460 GGYGGGGGGGYGGGRDRGYGGGGDRGYSRGGDGG 561
Score = 31.6 bits (70), Expect = 0.37
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +1
Query: 88 VCLAGGKGMMDNSEDSQRKSLEEAMKSLQEKIQKGEYSGGSGSKPP--GGRGRG-GGGGN 144
V A + M D E ++L+ ++ E +G GG G GGRG G GGGG
Sbjct: 226 VTFASEQSMKDAIEGMNGQNLDGRNITVNEAQSRGGGGGGGGGGGGYGGGRGGGYGGGGR 405
Query: 145 SDGSEEGSTGG 155
G +GG
Sbjct: 406 GGGGGYNRSGG 438
Score = 31.2 bits (69), Expect = 0.48
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = +1
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G Y GG G GG GGGG N G G GG
Sbjct: 358 GGYGGGRGGGYGGGGRGGGGGYNRSGGGGGYGGG 459
Score = 30.8 bits (68), Expect = 0.63
Identities = 16/34 (47%), Positives = 17/34 (49%)
Frame = +1
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G Y GG GG G GGGGG G + G GG
Sbjct: 442 GGYGGG------GGYGGGGGGGYGGGRDRGYGGG 525
Score = 30.4 bits (67), Expect = 0.82
Identities = 15/34 (44%), Positives = 16/34 (46%)
Frame = +1
Query: 125 SGGSGSKPPGGRGRGGGGGNSDGSEEGSTGGMSD 158
SGG G GG GGGGG G + GG D
Sbjct: 430 SGGGGGYGGGGGYGGGGGGGYGGGRDRGYGGGGD 531
Score = 27.7 bits (60), Expect = 5.3
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +1
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G Y GG G GGGGG G G GG
Sbjct: 382 GGYGGGGRGGGGGYNRSGGGGGYGGGGGYGGGGG 483
>TC208462 homologue to UP|LSM4_TOBAC (Q43582) Probable U6 snRNA-associated
Sm-like protein LSm4 (Glycine-rich protein 10) (GRP 10),
partial (94%)
Length = 794
Score = 36.2 bits (82), Expect = 0.015
Identities = 22/61 (36%), Positives = 26/61 (42%)
Frame = +3
Query: 83 QKPRHVCLAGGKGMMDNSEDSQRKSLEEAMKSLQEKIQKGEYSGGSGSKPPGGRGRGGGG 142
+KP V G+G D Q K + + K Q G GG G KP G RG G G
Sbjct: 393 RKPPGVGRGRGRGREDGPGGRQPKGIGRGLDEGGPKGQGGRGRGGPGGKPGGNRGGGRGR 572
Query: 143 G 143
G
Sbjct: 573 G 575
>TC229606 similar to UP|Q941Q3 (Q941Q3) Floral homeotic protein HUA1, partial
(50%)
Length = 1569
Score = 36.2 bits (82), Expect = 0.015
Identities = 15/35 (42%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Frame = -2
Query: 118 KIQKGEYSGGSGSKPPGGRG-RGGGGGNSDGSEEG 151
+++ G + GG G + PGG RGGGGG G + G
Sbjct: 119 EVKGGRHGGGGGDRGPGGEEIRGGGGGGDSGGDAG 15
Score = 27.3 bits (59), Expect = 6.9
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 125 SGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
S G + GGR GGGG G EE GG
Sbjct: 137 SVGGAFEVKGGRHGGGGGDRGPGGEEIRGGG 45
>TC217019 weakly similar to UP|Q94A32 (Q94A32) AT3g43520/T18D12_90, partial
(48%)
Length = 929
Score = 35.0 bits (79), Expect = 0.033
Identities = 24/69 (34%), Positives = 32/69 (45%), Gaps = 7/69 (10%)
Frame = +1
Query: 126 GGSGSKPPGGRGRGGGGGNSDGSEEGSTGG-------MSDETAQIVFATIGFMFVYIYVI 178
G +G+ GG G GGGGG+ EEGS G MS + A +G V Y+
Sbjct: 274 GANGNANGGGGGGGGGGGDDSKGEEGSDGDKRKMALLMSQKFTLAYAALVGVGGVMGYLK 453
Query: 179 NGVELTKLA 187
+G + LA
Sbjct: 454 SGSNKSLLA 480
>TC214476 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (14%)
Length = 642
Score = 35.0 bits (79), Expect = 0.033
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGGMSDE 159
G Y GG GG GGGGG G G GG D+
Sbjct: 427 GGYGGGGSGGSEGGGSSGGGGGGGGGGGGGGYGGGGDK 314
Score = 34.3 bits (77), Expect = 0.057
Identities = 20/42 (47%), Positives = 21/42 (49%), Gaps = 8/42 (19%)
Frame = -3
Query: 122 GEYSGGSGSKPPGGRGRGG--------GGGNSDGSEEGSTGG 155
G +GG GSK GG G GG GGG S G GS GG
Sbjct: 628 GGSAGGGGSKGGGGYGGGGSQGGGGSAGGGGS*GGSGGSAGG 503
Score = 33.9 bits (76), Expect = 0.074
Identities = 20/38 (52%), Positives = 23/38 (59%), Gaps = 3/38 (7%)
Frame = -3
Query: 121 KGEYSGGSGSKPPGGRGRGGGG---GNSDGSEEGSTGG 155
+G SGG GS+ GG G GGGG G S GSE G + G
Sbjct: 484 QGGGSGGGGSQG-GGSGSGGGGYGGGGSGGSEGGGSSG 374
Score = 32.0 bits (71), Expect = 0.28
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGGMSDE 159
G GGS GG G GGGGG G ++G GG+ +
Sbjct: 400 GSEGGGSSGGGGGGGGGGGGGGYGGGGDKG--GGIGGD 293
Score = 31.6 bits (70), Expect = 0.37
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G +GG GS GG G GGG GS+ G +GG
Sbjct: 559 GGSAGGGGS*--GGSGGSAGGGEGSGSQGGGSGG 464
Score = 31.2 bits (69), Expect = 0.48
Identities = 18/35 (51%), Positives = 19/35 (53%), Gaps = 5/35 (14%)
Frame = -3
Query: 126 GGSGSKPPGGRG---RGG--GGGNSDGSEEGSTGG 155
GGSG GG G +GG GGG S G GS GG
Sbjct: 529 GGSGGSAGGGEGSGSQGGGSGGGGSQGGGSGSGGG 425
Score = 30.8 bits (68), Expect = 0.63
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = -3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTG 154
G GG GS GG G GGGG GS G G
Sbjct: 517 GSAGGGEGSGSQGG-GSGGGGSQGGGSGSGGGG 422
Score = 28.5 bits (62), Expect = 3.1
Identities = 16/34 (47%), Positives = 17/34 (49%), Gaps = 1/34 (2%)
Frame = -3
Query: 122 GEYSGGSGSKPPGGRGRG-GGGGNSDGSEEGSTG 154
G SGG G GG G G GGGG+ G G G
Sbjct: 388 GGSSGGGGGGGGGGGGGGYGGGGDKGGGIGGDKG 287
Score = 27.7 bits (60), Expect = 5.3
Identities = 14/34 (41%), Positives = 15/34 (43%)
Frame = -3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G SGG G G G GGG + G G GG
Sbjct: 445 GSGSGGGGYGGGGSGGSEGGGSSGGGGGGGGGGG 344
Score = 27.3 bits (59), Expect = 6.9
Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -3
Query: 126 GGSGSKPPGGRGRGGG--GGNSDGSEEGSTGG 155
GG GS GG GGG GG S G GS GG
Sbjct: 634 GGGGSAGGGGSKGGGGYGGGGSQGG-GGSAGG 542
>TC210426 similar to UP|Q9FK53 (Q9FK53) Similarity to GAR1 protein, partial
(50%)
Length = 434
Score = 35.0 bits (79), Expect = 0.033
Identities = 21/51 (41%), Positives = 22/51 (42%)
Frame = +3
Query: 105 RKSLEEAMKSLQEKIQKGEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
RK L A Q K Q GG G + G GRGGGG G G GG
Sbjct: 177 RKLLPLARFLPQPKGQSAGRGGGGGGRGGGRGGRGGGGFRGRGGPRGGRGG 329
>AI959820 similar to GP|14335118|gb| At1g30200/F12P21_1 {Arabidopsis
thaliana}, partial (19%)
Length = 342
Score = 35.0 bits (79), Expect = 0.033
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = -1
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTG 154
GE GG G GGRGR GGGG + G+EE + G
Sbjct: 297 GEGGGGGG----GGRGRDGGGGGAFGAEELTEG 211
>CA783317 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
{Volvox carteri f. nagariensis}, partial (23%)
Length = 159
Score = 35.0 bits (79), Expect = 0.033
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +3
Query: 116 QEKIQKGEYSGGSGSKPPGGRGRGGGGGNSDGS----EEGSTGG 155
+E +K GG G GGRG GGGGG G+ +EG GG
Sbjct: 12 EENHRKKAGRGGGGXGGGGGRGGGGGGGGGGGAXRXEKEGGGGG 143
Score = 34.3 bits (77), Expect = 0.057
Identities = 17/35 (48%), Positives = 18/35 (50%), Gaps = 5/35 (14%)
Frame = +2
Query: 126 GGSGSKPP-----GGRGRGGGGGNSDGSEEGSTGG 155
GG G +PP GG G GGGGG G G GG
Sbjct: 2 GGGGREPPEKSRPGGGGGGGGGGEGGGGGGGGGGG 106
Score = 31.2 bits (69), Expect = 0.48
Identities = 15/34 (44%), Positives = 16/34 (46%)
Frame = +3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G GG G + GG G GGGG E G GG
Sbjct: 45 GGGXGGGGGRGGGGGGGGGGGAXRXEKEGGGGGG 146
Score = 27.7 bits (60), Expect = 5.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEG 151
GE GG G GG G GGG G G
Sbjct: 68 GEGGGGGGGGGGGGXXXGEGGGGGGGGRGG 157
>TC231450
Length = 676
Score = 34.7 bits (78), Expect = 0.043
Identities = 25/102 (24%), Positives = 41/102 (39%), Gaps = 23/102 (22%)
Frame = -2
Query: 91 AGGKGMMDNSEDSQRKSLEEAMKSLQEKIQKGEYSGGSGS-------------KPPGG-- 135
A G +N+E S ++ +++ M + G++ G+ KP
Sbjct: 306 AKGDHRFENAEASAKEDVDDVMPPESDSRNLGDHGXGANGGEEHINGKSVVSCKPATNED 127
Query: 136 --------RGRGGGGGNSDGSEEGSTGGMSDETAQIVFATIG 169
R GG G DGS+E GG++ E AQ+V +G
Sbjct: 126 GDTWTAEIR*EGGAGEGEDGSDEADAGGVAAEEAQVVD*NVG 1
>TC211031 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (11%)
Length = 678
Score = 34.7 bits (78), Expect = 0.043
Identities = 16/34 (47%), Positives = 17/34 (49%)
Frame = -3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G GG+G GG G GG GGN G G GG
Sbjct: 277 GGGDGGNGGGGDGGNGGGGDGGNGGGGASGIGGG 176
Score = 34.3 bits (77), Expect = 0.057
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G GG S GG+G GG GGN G + G+ GG
Sbjct: 325 GGKGGGVDSGIGGGKGGGGDGGNGGGGDGGNGGG 224
Score = 29.6 bits (65), Expect = 1.4
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGGMSD 158
G SGG+G GG GGG G G +G GG D
Sbjct: 424 GGASGGNG----GGGASGGGDGRFGGEGDGGKGGGGD 326
Score = 27.3 bits (59), Expect = 6.9
Identities = 14/34 (41%), Positives = 17/34 (49%)
Frame = -3
Query: 125 SGGSGSKPPGGRGRGGGGGNSDGSEEGSTGGMSD 158
+GGSG G GGGG + G +G GG D
Sbjct: 445 NGGSGGGGGASGGNGGGGASGGG--DGRFGGEGD 350
Score = 26.9 bits (58), Expect = 9.0
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = -3
Query: 127 GSGSKPPGGRGRGGG---GGNSDGSEEGSTGGM 156
G G GG GR GG GG G + G GG+
Sbjct: 403 GGGGASGGGDGRFGGEGDGGKGGGGDGGKGGGV 305
>TC214511 weakly similar to PIR|C85356|C85356 glycine-rich protein [imported]
- Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(88%)
Length = 1085
Score = 34.3 bits (77), Expect = 0.057
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 120 QKGEYSG---GSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
+ G Y+G GSGS GRG GGGGG G GS G
Sbjct: 656 EAGSYAGSRAGSGSGRSQGRGGGGGGGGGGGGGGGSGYG 772
Score = 28.9 bits (63), Expect = 2.4
Identities = 14/27 (51%), Positives = 15/27 (54%)
Frame = +2
Query: 125 SGGSGSKPPGGRGRGGGGGNSDGSEEG 151
S G G GG G GGGGG+ G EG
Sbjct: 704 SQGRGGGGGGGGGGGGGGGSGYGHGEG 784
>TC207679 similar to UP|Q7XJI7 (Q7XJI7) Glycine-rich protein TomR2, partial
(22%)
Length = 425
Score = 34.3 bits (77), Expect = 0.057
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 126 GGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
GGSG GG GGGGG+ G GS GG
Sbjct: 42 GGSGGGYGGGAAGGGGGGSGGGGGAGSGGG 131
Score = 31.2 bits (69), Expect = 0.48
Identities = 14/34 (41%), Positives = 16/34 (46%)
Frame = +3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G Y GG+ GG G GGG G+ G G G
Sbjct: 54 GGYGGGAAGGGGGGSGGGGGAGSGGGGAHGGGYG 155
Score = 30.4 bits (67), Expect = 0.82
Identities = 15/34 (44%), Positives = 16/34 (46%)
Frame = +3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G SGG GG GGGGG S G +GG
Sbjct: 27 GYGSGGGSGGGYGGGAAGGGGGGSGGGGGAGSGG 128
Score = 30.4 bits (67), Expect = 0.82
Identities = 14/34 (41%), Positives = 16/34 (46%)
Frame = +3
Query: 122 GEYSGGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
G +GG G GG G G GGG + G G G
Sbjct: 66 GGAAGGGGGGSGGGGGAGSGGGGAHGGGYGGGAG 167
Score = 28.1 bits (61), Expect = 4.1
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 126 GGSGSKPPGGRGRGGGGGNSDGSEEGSTGG 155
GG+GS G G G GGG + G E G GG
Sbjct: 108 GGAGSGGGGAHGGGYGGG-AGGGEGGGHGG 194
Score = 27.7 bits (60), Expect = 5.3
Identities = 15/32 (46%), Positives = 16/32 (49%), Gaps = 1/32 (3%)
Frame = +3
Query: 127 GSGSKPPGGRGRGGG-GGNSDGSEEGSTGGMS 157
G+G GG G GGG GG G G GG S
Sbjct: 3 GAGGAHEGGYGSGGGSGGGYGGGAAGGGGGGS 98
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,075,710
Number of Sequences: 63676
Number of extensions: 134870
Number of successful extensions: 2293
Number of sequences better than 10.0: 253
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2089
length of query: 255
length of database: 12,639,632
effective HSP length: 95
effective length of query: 160
effective length of database: 6,590,412
effective search space: 1054465920
effective search space used: 1054465920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC122724.2