BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122723.6 - phase: 0
(437 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW568086 202 2e-52
TC218291 similar to GB|AAM91387.1|22137084|AY133557 At3g13350/MD... 154 8e-38
TC210380 similar to PIR|B96789|B96789 protein T23E18.4 [imported... 137 7e-33
TC218292 similar to GB|AAM91387.1|22137084|AY133557 At3g13350/MD... 131 5e-31
BE824414 84 1e-16
TC217635 similar to UP|O04235 (O04235) Transcription factor, par... 66 4e-11
TC217636 homologue to UP|O04235 (O04235) Transcription factor, p... 64 1e-10
TC227653 similar to UP|O80383 (O80383) 98b, partial (78%) 56 4e-08
TC226224 39 0.004
BQ094251 similar to GP|14550383|gb Sheath to neuron transformati... 37 0.023
AW733430 35 0.067
TC228802 similar to UP|Q6ZLD8 (Q6ZLD8) Fiber protein-like, parti... 34 0.15
TC218285 weakly similar to UP|Q9SKM6 (Q9SKM6) En/Spm-like transp... 33 0.19
TC232391 similar to UP|Q7XA91 (Q7XA91) At3g27960, partial (14%) 32 0.43
CO980340 32 0.43
TC228933 similar to UP|Q6NQ79 (Q6NQ79) At3g43240, partial (32%) 31 0.96
BE190612 31 0.96
BE803195 similar to GP|8920409|emb| SSRP1 protein {Zea mays}, pa... 31 0.96
TC218994 weakly similar to UP|Q9SGT5 (Q9SGT5) T6H22.12 protein, ... 25 1.3
TC207029 weakly similar to UP|Q7R8E7 (Q7R8E7) Ran-binding protei... 30 2.8
>AW568086
Length = 435
Score = 202 bits (515), Expect = 2e-52
Identities = 107/147 (72%), Positives = 118/147 (79%), Gaps = 4/147 (2%)
Frame = +3
Query: 243 RKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKT 302
RKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLL+ D++ISRMIGELWN LKESEKT
Sbjct: 3 RKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLHHGKDREISRMIGELWNKLKESEKT 182
Query: 303 VYQEKAIKDKERYQAEMEDYRDKMKTSIVTDNAGPLQQRFPEGDSALVDVDIKMH----D 358
VYQEKA+KDKERY+AEMEDYR+K K V +A PLQQR PE D+ ++DVDIKM D
Sbjct: 183 VYQEKAMKDKERYRAEMEDYREKQKMGQVISDAVPLQQRLPEPDADMLDVDIKMDEAEGD 362
Query: 359 SCQTPEESSSGESDYVADDINMDASSG 385
S QTPEESS G SDY +D N A G
Sbjct: 363 SPQTPEESSGG-SDY--EDYNKTAERG 434
>TC218291 similar to GB|AAM91387.1|22137084|AY133557 At3g13350/MDC11_14
{Arabidopsis thaliana;} , partial (22%)
Length = 697
Score = 154 bits (389), Expect = 8e-38
Identities = 83/198 (41%), Positives = 112/198 (55%)
Frame = +3
Query: 25 YPEPLAKYDDVVANPKLFMLTLEKLHASMGTKFMVPIIGGKELDLCRLFIEVTSRGGIEK 84
YP P A+Y D+V + LF TL+ H +GTK+ V +GG LDL RLF+EVTSRGGIEK
Sbjct: 201 YPAPTARYQDIVRDANLFWGTLQAFHKILGTKYKVATVGGTSLDLHRLFVEVTSRGGIEK 380
Query: 85 LMKERRWKEVTAAFSFPSTATNASFVLRKYYSSLLYHYEQIYYFRSKRWTPASSDALQNQ 144
++ +R+WKEV F+F T T+AS V+RK Y S+LYHYEQ+YYF + P
Sbjct: 381 VIVDRKWKEVILTFNFKDTITSASXVVRKSYLSMLYHYEQVYYFGRQGIPP--------- 533
Query: 145 STMSVPASITQFLQPSPGTHPVDFQKSGVNASELPQVSSSGSSLAGVIDGKFESGYLVSV 204
P+PGT V + ++G ID KF+ GY+V+V
Sbjct: 534 --------------PTPGT----------------PVQAHDDMVSGTIDAKFDGGYVVTV 623
Query: 205 SVGSETLKGVLYESPQSI 222
+GSE LKGVL+ P ++
Sbjct: 624 ILGSEQLKGVLFHVPDNV 677
>TC210380 similar to PIR|B96789|B96789 protein T23E18.4 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(32%)
Length = 807
Score = 137 bits (346), Expect = 7e-33
Identities = 70/157 (44%), Positives = 99/157 (62%), Gaps = 3/157 (1%)
Frame = +2
Query: 174 NASELPQVSSSGSSLAGVIDGKFESGYLVSVSVGSETLKGVLYESPQSI---KINNNNIA 230
N+ E +S S G I+GKF+ GYLVSV +GSE L+GVLY Q + I + A
Sbjct: 56 NSPESRAEDTSCLSGNGTIEGKFDCGYLVSVKLGSEVLRGVLYHPEQLVPPPSIPKHESA 235
Query: 231 SAALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIG 290
+ + R R+K +R DP +PKPNRSGYNFFFAE+H LK L +++ ++MIG
Sbjct: 236 IVPINRKPHRSGRRKKNQRRWDPNYPKPNRSGYNFFFAEKHYTLKTLYPNREREFTKMIG 415
Query: 291 ELWNNLKESEKTVYQEKAIKDKERYQAEMEDYRDKMK 327
+ WN+L E+ VYQ ++DKERY+ E+ +Y++KMK
Sbjct: 416 QSWNSLSPEERMVYQNIGLRDKERYKRELTEYKEKMK 526
>TC218292 similar to GB|AAM91387.1|22137084|AY133557 At3g13350/MDC11_14
{Arabidopsis thaliana;} , partial (37%)
Length = 972
Score = 131 bits (330), Expect = 5e-31
Identities = 68/152 (44%), Positives = 99/152 (64%), Gaps = 4/152 (2%)
Frame = +2
Query: 181 VSSSGSSLAGVIDGKFESGYLVSVSVGSETLKGVLYESPQSIKINNN---NIASAALGV- 236
V + ++G ID KF+ GY+V+V++GSE LKGVL+ P ++ +++ +S LG
Sbjct: 299 VQAHDDMVSGTIDAKFDVGYVVTVTLGSEQLKGVLFHVPDNVSQSSHAEGTSSSQNLGDG 478
Query: 237 QRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNL 296
+ RK+++ RDP PK NRSGYNFFFAE +ARLK ++ IS+ IG LWNNL
Sbjct: 479 TSNSQSRKRAKYAPRDPFRPKSNRSGYNFFFAENYARLKPSYHGQERAISKRIGFLWNNL 658
Query: 297 KESEKTVYQEKAIKDKERYQAEMEDYRDKMKT 328
E+E+ VYQEK ++DKERY+ E+ +Y+ T
Sbjct: 659 SEAERQVYQEKGMRDKERYRTELMEYKSNNST 754
Score = 69.3 bits (168), Expect = 3e-12
Identities = 31/53 (58%), Positives = 41/53 (76%)
Frame = +3
Query: 59 VPIIGGKELDLCRLFIEVTSRGGIEKLMKERRWKEVTAAFSFPSTATNASFVL 111
+ +GG LDL RLF+EVTSRGGIEK++ +R+WKEV F+F T TNASF++
Sbjct: 48 ISTVGGTPLDLHRLFVEVTSRGGIEKVIVDRKWKEVILTFNFKDTITNASFMI 206
>BE824414
Length = 627
Score = 84.3 bits (207), Expect = 1e-16
Identities = 51/91 (56%), Positives = 59/91 (64%), Gaps = 4/91 (4%)
Frame = -2
Query: 299 SEKTVYQEKAIKDKERYQAEMEDYRDKMKTSIVTDNAGPLQQRFPEGDSALVDVDIKMH- 357
SEKTVYQEKA+ KERY+ EM R+K K V +A PL QR PE D+ ++DVDIKM
Sbjct: 626 SEKTVYQEKAMXXKERYRXEMXXXREKQKMGQVISDAVPLXQRLPEPDADMLDVDIKMDE 447
Query: 358 ---DSCQTPEESSSGESDYVADDINMDASSG 385
DS QTPEE SSG SDY +D N A G
Sbjct: 446 AEGDSPQTPEE-SSGXSDY--EDYNKTAERG 363
>TC217635 similar to UP|O04235 (O04235) Transcription factor, partial (22%)
Length = 759
Score = 65.9 bits (159), Expect = 4e-11
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Frame = +2
Query: 243 RKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMD-KDISRMIGELWNNLKESEK 301
+K+ + KR+DP PK SG+ FF + LK N + D+SR++GE W L EK
Sbjct: 140 KKRKQKKRKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVSRVLGEKWKKLSVEEK 319
Query: 302 TVYQEKAIKDKERYQAEMEDYRDKMKTSIVTDN 334
Y+ KA +DK+RY+ E+ Y++ +I + N
Sbjct: 320 EPYEAKAREDKKRYKDEISGYKNPQPMNIDSGN 418
>TC217636 homologue to UP|O04235 (O04235) Transcription factor, partial (45%)
Length = 1101
Score = 64.3 bits (155), Expect = 1e-10
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = +2
Query: 243 RKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMD-KDISRMIGELWNNLKESEK 301
+KK + K++DP PK SG+ FF + LK N + D+ R++GE W L EK
Sbjct: 590 KKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVGRVLGEKWKKLSAEEK 769
Query: 302 TVYQEKAIKDKERYQAEMEDYRDKMKTSIVTDN 334
Y+ KA +DK+RY E+ Y++ +I + N
Sbjct: 770 EPYEAKAREDKKRYMDEISGYKNPQPMNIDSGN 868
>TC227653 similar to UP|O80383 (O80383) 98b, partial (78%)
Length = 1654
Score = 55.8 bits (133), Expect = 4e-08
Identities = 29/81 (35%), Positives = 43/81 (52%)
Frame = +1
Query: 245 KSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVY 304
K K +DP PK S Y F ++ A L N+ ++ ++ E W N+ E +K Y
Sbjct: 814 KKNKKEKDPLKPKHPMSAYFLFTNDRRAALAAENKNF-LEVPKITSEEWKNMTEEQKRPY 990
Query: 305 QEKAIKDKERYQAEMEDYRDK 325
+E A K+KE+Y EME Y+ K
Sbjct: 991 EEMAKKNKEQYALEMEAYKQK 1053
>TC226224
Length = 1804
Score = 39.3 bits (90), Expect = 0.004
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Frame = +3
Query: 137 SSDALQNQSTMSVPASITQFLQPSPGTHPVD----FQKSGVNASELPQVSSSGSSLAGVI 192
SS L +Q+ P Q P PG V+ Q+ N S V G ++GVI
Sbjct: 261 SSYILVSQNRRQNPVRAEQAPVP-PGFEGVNGNQQLQRGQENHSNNAMV---GQLVSGVI 428
Query: 193 DGKFESGYLVSVSVG--SETLKGVLYESPQSIKIN-NNNIASAALGVQR 238
+ F++GYL+SV VG + TL+G++++ + + I+ +N++A + +QR
Sbjct: 429 EAAFDAGYLLSVRVGDSNTTLRGLIFKPGRYVPISPDNDVAPSVPMIQR 575
>BQ094251 similar to GP|14550383|gb Sheath to neuron transformation protein 1
isoform b {Caenorhabditis elegans}, partial (47%)
Length = 341
Score = 36.6 bits (83), Expect = 0.023
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 284 DISRMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDY 322
+I++ E W + + EK + E A KD ERYQAE+ Y
Sbjct: 40 EITKKCSEKWKTMSDDEKRRFYELAQKDAERYQAEVAAY 156
>AW733430
Length = 184
Score = 35.0 bits (79), Expect = 0.067
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +2
Query: 185 GSSLAGVIDGKFESGYLVSVSVGSET--LKGVLYESPQSIKIN-NNNIASAALGVQR 238
G + GVIDG F +GYL+SV V L+G+++ Q +N N++A ++R
Sbjct: 14 GKVVTGVIDGTFNAGYLLSVKVADTDAFLRGLVFVEDQVSPVNVENDVAPHVKMIER 184
>TC228802 similar to UP|Q6ZLD8 (Q6ZLD8) Fiber protein-like, partial (21%)
Length = 873
Score = 33.9 bits (76), Expect = 0.15
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 55 TKFMVPIIGGKELDLCRLFIEVTSRGGIEKLMKERRWK----EVTAAFSFPSTATNASFV 110
T+F I+ GK LDL L+ EV +RGG + WK ++ + T
Sbjct: 16 TEFPDAILNGKRLDLYNLYKEVVTRGGFH-VGNGINWKGQIFSKMRNYTTTNRMTGVGNT 192
Query: 111 LRKYYSSLLYHYE 123
L+++Y + L YE
Sbjct: 193 LKRHYETYLLEYE 231
>TC218285 weakly similar to UP|Q9SKM6 (Q9SKM6) En/Spm-like transposon
protein, partial (18%)
Length = 765
Score = 33.5 bits (75), Expect = 0.19
Identities = 25/82 (30%), Positives = 35/82 (42%)
Frame = +1
Query: 159 PSPGTHPVDFQKSGVNASELPQVSSSGSSLAGVIDGKFESGYLVSVSVGSETLKGVLYES 218
PSP P D GVN + + V SS G+ GK ++G + V +G+ GV+
Sbjct: 355 PSPAPAPADDAHDGVNHAGMGGVDEKSSSSGGMSSGK-KAGIALGVIIGA----GVVVLG 519
Query: 219 PQSIKINNNNIASAALGVQRRR 240
K NI + G RR
Sbjct: 520 ALVYKRRRQNIQRSQYGYAARR 585
>TC232391 similar to UP|Q7XA91 (Q7XA91) At3g27960, partial (14%)
Length = 562
Score = 32.3 bits (72), Expect = 0.43
Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 20/112 (17%)
Frame = -1
Query: 91 WKEVTAAFSFPSTATNASFVLRKYYSSLLYHYEQIY------YFRSKRWTP--------- 135
WK + FP A ++RK S Y Q+Y +F S W
Sbjct: 463 WKPTSTLLLFPRPNMQAMIIVRKNS*SCFYIQPQVYRTLMPLFFTS*EWVSRRVSNDLLD 284
Query: 136 ----ASSDALQNQSTMSVPASITQFLQPS-PGTHPVDFQKSGVNASELPQVS 182
A D+ N S + +S + F PS P + K + +S LP S
Sbjct: 283 LLFRALPDSFNNSSNLRFSSSTSGFAVPSFSSLMPTTYSKISMASSTLPIAS 128
>CO980340
Length = 792
Score = 32.3 bits (72), Expect = 0.43
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 185 GSSLAGVIDGKFESGYLVSVSVGSETLKGVLY 216
G+ + G +DG F+SG L++ +V +GVL+
Sbjct: 599 GAEVRGKVDGAFDSGLLMTAAVNGRVFRGVLF 504
>TC228933 similar to UP|Q6NQ79 (Q6NQ79) At3g43240, partial (32%)
Length = 1202
Score = 31.2 bits (69), Expect = 0.96
Identities = 23/72 (31%), Positives = 32/72 (43%), Gaps = 4/72 (5%)
Frame = +1
Query: 56 KFMVPIIGGKELDLCRLFIEVTSRGGIEKLMKERRWKEVTAAFSFPSTATN----ASFVL 111
+F I+ K LDL L+ EV SRGG + WK + T TN L
Sbjct: 442 EFPDAILNAKRLDLFNLYREVVSRGGFH-VGNGINWKGQVFSKMRNHTMTNRMTGVGNTL 618
Query: 112 RKYYSSLLYHYE 123
+++Y + L YE
Sbjct: 619 KRHYETYLLEYE 654
>BE190612
Length = 517
Score = 31.2 bits (69), Expect = 0.96
Identities = 17/39 (43%), Positives = 22/39 (55%)
Frame = +2
Query: 19 APMSHSYPEPLAKYDDVVANPKLFMLTLEKLHASMGTKF 57
A SH+YP +YDD N KLFM L +L +G+ F
Sbjct: 317 AVSSHAYPSSCGQYDD---NVKLFMKPLLELFQHIGSPF 424
>BE803195 similar to GP|8920409|emb| SSRP1 protein {Zea mays}, partial (2%)
Length = 253
Score = 31.2 bits (69), Expect = 0.96
Identities = 15/36 (41%), Positives = 22/36 (60%)
Frame = +2
Query: 243 RKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLN 278
+KK++ K++DP PK SG+ FFF + LK N
Sbjct: 98 KKKNQKKKKDPIAPKGAMSGFLFFFNLKKEILKKTN 205
>TC218994 weakly similar to UP|Q9SGT5 (Q9SGT5) T6H22.12 protein, partial
(35%)
Length = 538
Score = 25.4 bits (54), Expect(2) = 1.3
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +2
Query: 273 RLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDYRDKMKTSIVT 332
RL L + + S + L N+K S++ +K R A++E ++ ++ S+
Sbjct: 278 RLSSLTRASHQTDSTLNTALNENIKLSKERDQLAATVKKLSRDFAKLETFKKQLMQSLTD 457
Query: 333 DNA 335
DNA
Sbjct: 458 DNA 466
Score = 23.9 bits (50), Expect(2) = 1.3
Identities = 10/23 (43%), Positives = 12/23 (51%)
Frame = +1
Query: 238 RRRRRRKKSEIKRRDPAHPKPNR 260
R RR E R+ P HP+P R
Sbjct: 208 RVRRLSPPPEASRKGPNHPRPRR 276
>TC207029 weakly similar to UP|Q7R8E7 (Q7R8E7) Ran-binding protein, partial
(19%)
Length = 712
Score = 29.6 bits (65), Expect = 2.8
Identities = 17/87 (19%), Positives = 44/87 (50%)
Frame = +1
Query: 241 RRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESE 300
++ KK + K ++ H K + ++ +++++ + +D + + GE + K+
Sbjct: 70 KKNKKKDKKEKEKDHKKEKKEDGKEEGEKEKSKVEVSVRDIDIEETTKEGEKEDKEKDDG 249
Query: 301 KTVYQEKAIKDKERYQAEMEDYRDKMK 327
K V ++K +DK++ + + +DK K
Sbjct: 250 KEVKEKKKKEDKDKKEKKKVTGKDKTK 330
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,072,202
Number of Sequences: 63676
Number of extensions: 212729
Number of successful extensions: 1427
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of query: 437
length of database: 12,639,632
effective HSP length: 100
effective length of query: 337
effective length of database: 6,272,032
effective search space: 2113674784
effective search space used: 2113674784
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC122723.6