BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122169.4 - phase: 0
(165 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216524 similar to UP|Q9LDH1 (Q9LDH1) SigA binding protein, par... 124 3e-29
TC230829 weakly similar to UP|Q9LDH1 (Q9LDH1) SigA binding prote... 124 3e-29
BE802864 similar to GP|20160684|dbj P0468B07.6 {Oryza sativa (ja... 55 1e-08
TC231647 weakly similar to UP|Q9LDH1 (Q9LDH1) SigA binding prote... 51 2e-07
AI938454 weakly similar to PIR|T51259|T512 SigA binding protein ... 47 3e-06
TC210785 similar to GB|AAP75802.1|32189295|BT009652 At2g35230 {A... 37 0.004
TC220604 similar to UP|Q9LS54 (Q9LS54) Gb|AAF16598.1 (At3g18360)... 32 0.18
BE020960 31 0.31
TC223778 UP|Q6JH52 (Q6JH52) Olfactory receptor (Fragment), parti... 30 0.52
TC214299 weakly similar to GB|AAS76234.1|45752672|BT012139 At3g5... 30 0.52
TC220978 similar to GB|AAP75802.1|32189295|BT009652 At2g35230 {A... 30 0.69
TC212572 29 0.89
TC228823 similar to UP|Q9FL84 (Q9FL84) Arabidopsis thaliana geno... 29 1.2
TC218782 similar to UP|Q41042 (Q41042) Pisum sativum L. (clone n... 29 1.2
CB063665 29 1.2
AI973930 28 2.6
CA953287 28 2.6
TC229170 28 2.6
BQ296167 28 2.6
TC221970 27 3.4
>TC216524 similar to UP|Q9LDH1 (Q9LDH1) SigA binding protein, partial (21%)
Length = 798
Score = 124 bits (310), Expect = 3e-29
Identities = 81/177 (45%), Positives = 105/177 (58%), Gaps = 13/177 (7%)
Frame = +1
Query: 1 MDSISTSSTSSSVISTVQQKTPTKLTKPKKKKNNNNTYNKPIKVVYISNPMKVKTSASEF 60
MD+I T++ I+ VQQ TPTK TKPKKK + + P+KVVYISNPMK+KTSASEF
Sbjct: 112 MDTIRTTT-----ITRVQQTTPTKKTKPKKKNSPH-----PVKVVYISNPMKIKTSASEF 261
Query: 61 RALVQELTGQYAESPPNPSRFQEFDVNDSGTDQGGCENMMDCDKSDQTVVGVPSLVDPDD 120
RALVQELTGQ AESPP+PSRF DS + E + D + VP + D+
Sbjct: 262 RALVQELTGQDAESPPDPSRFHGHH-PDSSSSVENIEEEEEEDNIHRVNCVVPPMTATDE 438
Query: 121 ------------KGKPSEAGSSN-ESFDEDVLLMPEMMDNIWDLLPTSAFYESFQLD 164
+ +PS S+N + D+D + P+M++NI LLP S FYES L+
Sbjct: 439 ISLLIGCCNQNGQHQPSSMESNNFQLLDDDDVFTPQMIENISALLPASVFYESPHLN 609
>TC230829 weakly similar to UP|Q9LDH1 (Q9LDH1) SigA binding protein, partial
(28%)
Length = 862
Score = 124 bits (310), Expect = 3e-29
Identities = 80/175 (45%), Positives = 103/175 (58%), Gaps = 11/175 (6%)
Frame = +2
Query: 1 MDSISTSSTSSSVISTVQQKTPTKLTKPKKKKNNNNTYNKPIKVVYISNPMKVKTSASEF 60
MD+I +++T S VQQ+TPTK TKPKKK + P+KVVYISNPMK+KTSASEF
Sbjct: 137 MDTIRSTTTIS-----VQQRTPTKKTKPKKKNTPH-----PVKVVYISNPMKIKTSASEF 286
Query: 61 RALVQELTGQYAESPPNPSRFQEFDVNDSGTDQGGCENMMDCDKSDQTVV---------G 111
RALVQELTGQ AESPP+P+RF DS + + D S VV
Sbjct: 287 RALVQELTGQDAESPPDPTRFHGLIHPDSSSSVDHIKEEEDNVHSVNCVVPPAVADENMS 466
Query: 112 VPSLVDPDDKGKPSEAGSSN--ESFDEDVLLMPEMMDNIWDLLPTSAFYESFQLD 164
+ + + + +PS S N E D+D + P+M++NI LLP S FYES L+
Sbjct: 467 LAGCYEEEQQQQPSSMESINNFEPLDDDDVFTPQMIENISALLPASVFYESPHLN 631
>BE802864 similar to GP|20160684|dbj P0468B07.6 {Oryza sativa (japonica
cultivar-group)}, partial (16%)
Length = 417
Score = 55.5 bits (132), Expect = 1e-08
Identities = 27/42 (64%), Positives = 32/42 (75%)
Frame = +1
Query: 29 KKKKNNNNTYNKPIKVVYISNPMKVKTSASEFRALVQELTGQ 70
K+K + + K +KV YIS+PMKVKTSAS FRALVQELT Q
Sbjct: 112 KRKGQSKRGHKKNVKVTYISSPMKVKTSASNFRALVQELTSQ 237
>TC231647 weakly similar to UP|Q9LDH1 (Q9LDH1) SigA binding protein,
partial (19%)
Length = 822
Score = 51.2 bits (121), Expect = 2e-07
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +2
Query: 38 YNKPIKVVYISNPMKVKTSASEFRALVQELTGQ 70
+ K +KV YIS+PMKVKTS FRALVQELTGQ
Sbjct: 14 HKKNVKVTYISSPMKVKTSXXNFRALVQELTGQ 112
>AI938454 weakly similar to PIR|T51259|T512 SigA binding protein -
Arabidopsis thaliana, partial (19%)
Length = 127
Score = 47.4 bits (111), Expect = 3e-06
Identities = 27/47 (57%), Positives = 32/47 (67%)
Frame = +2
Query: 26 TKPKKKKNNNNTYNKPIKVVYISNPMKVKTSASEFRALVQELTGQYA 72
TKP K + + P +V YISNPMK KTSAS+FRA+ QELT Q A
Sbjct: 2 TKPNTKNSPH-----PARVGYISNPMKSKTSASDFRAMEQELTCQDA 127
>TC210785 similar to GB|AAP75802.1|32189295|BT009652 At2g35230 {Arabidopsis
thaliana;} , partial (6%)
Length = 819
Score = 37.0 bits (84), Expect = 0.004
Identities = 30/95 (31%), Positives = 43/95 (44%), Gaps = 17/95 (17%)
Frame = +2
Query: 1 MDSISTSSTSSSVISTVQQ-KTPTKLTKPKKKKNN---------------NNTYNKPIKV 44
+DS S+ T++S + Q K KL+ K NN NNT+NK +
Sbjct: 56 LDSSSSFPTTTSTTNRDQYLKQLNKLSHNISKPNNIKKPTFFESSQSLTHNNTFNKQYAL 235
Query: 45 VYISNPMKVKTSASEFRALVQELTGQYAESP-PNP 78
S P S ++FR +VQ+LTG +P P P
Sbjct: 236 PSESQPQVYNISKNDFRDMVQKLTGSPGHTPQPKP 340
>TC220604 similar to UP|Q9LS54 (Q9LS54) Gb|AAF16598.1 (At3g18360), partial
(10%)
Length = 623
Score = 31.6 bits (70), Expect = 0.18
Identities = 18/48 (37%), Positives = 27/48 (55%)
Frame = +2
Query: 23 TKLTKPKKKKNNNNTYNKPIKVVYISNPMKVKTSASEFRALVQELTGQ 70
TKL +P++ PI ++Y +P + T A +F ALVQ LTG+
Sbjct: 65 TKLQRPQRIN--------PI-IIYTESPKVIHTKAKDFMALVQRLTGR 181
>BE020960
Length = 388
Score = 30.8 bits (68), Expect = 0.31
Identities = 17/58 (29%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Frame = +2
Query: 20 KTPTKLTKPKKKKNNNNTYNKPIK---VVYISNPMKVKTSASEFRALVQELTGQYAES 74
K K+ KP ++ + P + ++Y +P + T+ S+F LVQ LTG + S
Sbjct: 41 KDSHKIKKPPLAPQPSHPHQPPPRQPIIIYTVSPKVIHTTPSDFMNLVQRLTGSSSSS 214
>TC223778 UP|Q6JH52 (Q6JH52) Olfactory receptor (Fragment), partial (6%)
Length = 519
Score = 30.0 bits (66), Expect = 0.52
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 20 KTPTKLTKPKKKKNNNNTYNKPIKVVYISNPMKVKTS 56
KTP K K K + NNN K K Y N K+KT+
Sbjct: 178 KTPIKKKKKKTR*FNNNNSIKNNKSAYFQNLQKIKTN 288
>TC214299 weakly similar to GB|AAS76234.1|45752672|BT012139 At3g58850
{Arabidopsis thaliana;} , partial (58%)
Length = 760
Score = 30.0 bits (66), Expect = 0.52
Identities = 16/35 (45%), Positives = 20/35 (56%)
Frame = +1
Query: 5 STSSTSSSVISTVQQKTPTKLTKPKKKKNNNNTYN 39
+TSS+SSS+ PT L KP +NNNN N
Sbjct: 145 TTSSSSSSMEQEDNTIIPTFLRKPAADQNNNNNNN 249
>TC220978 similar to GB|AAP75802.1|32189295|BT009652 At2g35230 {Arabidopsis
thaliana;} , partial (15%)
Length = 732
Score = 29.6 bits (65), Expect = 0.69
Identities = 22/77 (28%), Positives = 38/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 19 QKTPTKLTKPKKKKNNNNTYN--KPIKVVYISNPMKVKTSASEFRALVQELTGQYAESPP 76
+K+P L +P NNN++ N + + P S ++FR +VQ+LTG ++S
Sbjct: 215 RKSP--LHQPNYGNNNNSSMNGGRQQQQQPQPQPQVYNISKNDFRDIVQQLTGSPSQSQD 388
Query: 77 NPSRFQEFDVNDSGTDQ 93
+P + N+S Q
Sbjct: 389 HPQSKPPQNQNNSPKPQ 439
>TC212572
Length = 706
Score = 29.3 bits (64), Expect = 0.89
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 26/116 (22%)
Frame = +3
Query: 50 PMKVKTSASEFRALVQELTGQYAESPPNPSR--------FQEFDVNDSGTDQGGCENMMD 101
P KT++ A ++ T + A+ P P+R F++ T +GG ++
Sbjct: 48 PSNAKTASLLLEAALRIHTNKNAKPKPKPNRALGIFGSLFKKLTNRKRETIEGGAVAKVN 227
Query: 102 CDKSDQTVV--------------GVPSLV----DPDDKGKPSEAGSSNESFDEDVL 139
D D VV G PS +DK E+ SS SFD+ V+
Sbjct: 228 KDSDDDDVVVVGSCEVGFTCSCNGRPSSAVWSESNEDKSLDLESSSSGNSFDDSVV 395
>TC228823 similar to UP|Q9FL84 (Q9FL84) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K3K3, partial (25%)
Length = 675
Score = 28.9 bits (63), Expect = 1.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 19 QKTPTKLTKPKKKKNNNNTYNK 40
QK+ K K K KKNNNN NK
Sbjct: 85 QKSQNKTFKKKHKKNNNNNNNK 150
>TC218782 similar to UP|Q41042 (Q41042) Pisum sativum L. (clone na-481-5),
partial (20%)
Length = 925
Score = 28.9 bits (63), Expect = 1.2
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 114 SLVDPDDKGKPSEAGSSNESFDED 137
+L P +KGKP+ + SS+ES D+D
Sbjct: 271 TLSTPAEKGKPAASSSSSESSDDD 342
>CB063665
Length = 372
Score = 28.9 bits (63), Expect = 1.2
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 25 LTKPKKKKNNNNTYNKPIK 43
L +PKKKKN+NN Y K I+
Sbjct: 121 LKEPKKKKNDNNNYYKRIE 65
>AI973930
Length = 408
Score = 27.7 bits (60), Expect = 2.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 50 PMKVKTSASEFRALVQELTGQYAESPP 76
P S ++FR +VQ+LTG ++ PP
Sbjct: 261 PQVYNISKNDFRDIVQQLTGSPSQDPP 341
>CA953287
Length = 408
Score = 27.7 bits (60), Expect = 2.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 11 SSVISTVQQKTPTKLTKPKKKKNNNNTY 38
+ +I ++K T T P +KKN+NN Y
Sbjct: 301 NEIIKKKKEKKRTTATLPNRKKNHNNCY 218
>TC229170
Length = 1025
Score = 27.7 bits (60), Expect = 2.6
Identities = 17/75 (22%), Positives = 37/75 (48%)
Frame = +2
Query: 2 DSISTSSTSSSVISTVQQKTPTKLTKPKKKKNNNNTYNKPIKVVYISNPMKVKTSASEFR 61
D+ T++TSS + ++ + L++ K N + + + + + + + FR
Sbjct: 185 DATVTTTTSSPTPTMPSSESNSILSQLSPKGNVSKPIRRRSRASKKTPTTLLNANTTNFR 364
Query: 62 ALVQELTGQYAESPP 76
ALVQ+ TG ++ + P
Sbjct: 365 ALVQQFTGCHSTTMP 409
>BQ296167
Length = 421
Score = 27.7 bits (60), Expect = 2.6
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -2
Query: 10 SSSVISTVQQKTPTKLTKPKKKKNNNNTY--NKPIKVVYISN 49
+++V++ ++ +TPT+++ K NNT+ + + YISN
Sbjct: 408 NTTVVAVLESQTPTEMSSQSTKLKANNTHK*HN*LPTTYISN 283
>TC221970
Length = 365
Score = 27.3 bits (59), Expect = 3.4
Identities = 14/39 (35%), Positives = 22/39 (55%)
Frame = -2
Query: 24 KLTKPKKKKNNNNTYNKPIKVVYISNPMKVKTSASEFRA 62
K K +K NNNN + +K +Y+S +++S S F A
Sbjct: 199 KQRKDIQKTNNNNKNEEKVKRIYLSIQSPMQSSRSVFIA 83
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.306 0.125 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,304,503
Number of Sequences: 63676
Number of extensions: 74567
Number of successful extensions: 547
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of query: 165
length of database: 12,639,632
effective HSP length: 90
effective length of query: 75
effective length of database: 6,908,792
effective search space: 518159400
effective search space used: 518159400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC122169.4