BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122166.9 + phase: 0 /pseudo
(249 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216434 similar to UP|Q8GT65 (Q8GT65) Serpin-like protein (Frag... 250 4e-67
TC216436 similar to UP|Q8GT65 (Q8GT65) Serpin-like protein (Frag... 130 4e-31
BU964448 28 3.0
TC212974 weakly similar to UP|COM3_POPKI (Q43047) Caffeic acid 3... 28 5.1
TC223205 27 6.7
TC209489 27 6.7
AF050459 similar to GP|21743571|gb DEMETER protein {Arabidopsis ... 27 8.7
>TC216434 similar to UP|Q8GT65 (Q8GT65) Serpin-like protein (Fragment),
partial (96%)
Length = 1436
Score = 250 bits (639), Expect = 4e-67
Identities = 133/238 (55%), Positives = 178/238 (73%), Gaps = 11/238 (4%)
Frame = +1
Query: 16 KSLTKFTNVSLNITKHLLSNQKLNEKNIVFSPLSLNTVLIMIATGSEGPTQNQLLSFLQS 75
+S++ T+V+L+I+K LLS + +KN+V+SPLSL+ VL +IA GS+GPT +QLLSFL+S
Sbjct: 22 ESISNQTDVALSISKLLLSKEA-RDKNLVYSPLSLHVVLSIIAAGSKGPTLDQLLSFLRS 198
Query: 76 ESTGDLKSLCSQVVSSVLSDGARAGGPCLSYVNGVWVEKSLPLQPSFKQLMTTDFEATLS 135
+ST L S SQ+ + VLSD + AGGP LS+ +GVWVE+SL L PSFKQL++ D++ATL+
Sbjct: 199 KSTDHLNSFASQLFAVVLSDASPAGGPRLSFADGVWVEQSLSLLPSFKQLVSADYKATLA 378
Query: 136 AVDFVNK-----------AEKKTKGLIQDLLPHGSVNSLTSLIFANALYFKGVWKQKFDT 184
+VDF K AEK+T GL++DLLP GSV+S T LIFANALYFKG W +KFD+
Sbjct: 379 SVDFQTKAVEVANEVNSWAEKETNGLVKDLLPPGSVDSSTRLIFANALYFKGAWNEKFDS 558
Query: 185 SKTKDYDFDLLNGKSVKVPFMTSKNDQFISSLDGFKVLGLPINKAKMGVHSLFTFFFL 242
S TKDYDF LL+G+S++VPFMTS+ +QFI + DGFKVLGLP + + +FFL
Sbjct: 559 SITKDYDFHLLDGRSIRVPFMTSRKNQFIRAFDGFKVLGLPYKQGE-DKRQFTMYFFL 729
>TC216436 similar to UP|Q8GT65 (Q8GT65) Serpin-like protein (Fragment),
partial (40%)
Length = 489
Score = 130 bits (328), Expect = 4e-31
Identities = 72/136 (52%), Positives = 89/136 (64%), Gaps = 11/136 (8%)
Frame = +2
Query: 118 LQPSFKQLMTTDFEATLSAVDFVNKA-----------EKKTKGLIQDLLPHGSVNSLTSL 166
L PSFKQL+ ++ATL++VDF KA EK+T GL++DLLP GSV++ T L
Sbjct: 5 LHPSFKQLVRAQYKATLASVDFQTKAVEVTNEVNSWAEKETNGLVKDLLPPGSVDNSTKL 184
Query: 167 IFANALYFKGVWKQKFDTSKTKDYDFDLLNGKSVKVPFMTSKNDQFISSLDGFKVLGLPI 226
IFANAL+ KG W +KFD S TK YD LLNG SVKVPFMTSK QFI + + FKVLGL
Sbjct: 185 IFANALWCKGAWNEKFDASITKHYDLHLLNGSSVKVPFMTSKKKQFIMA*NSFKVLGLSY 364
Query: 227 NKAKMGVHSLFTFFFL 242
+ + +FFL
Sbjct: 365 KQGE-DKRQFTMYFFL 409
>BU964448
Length = 437
Score = 28.5 bits (62), Expect = 3.0
Identities = 21/68 (30%), Positives = 31/68 (44%)
Frame = -2
Query: 80 DLKSLCSQVVSSVLSDGARAGGPCLSYVNGVWVEKSLPLQPSFKQLMTTDFEATLSAVDF 139
DLK LC +VS + +R GP +Y+N + +K P+ + T+ AV
Sbjct: 202 DLKYLCKPLVSLMACPDSRDQGP--TYLNFRYSKKKKNSLPTSPLIRITNLNYYPKAVPL 29
Query: 140 VNKAEKKT 147
V E KT
Sbjct: 28 VQDQELKT 5
>TC212974 weakly similar to UP|COM3_POPKI (Q43047) Caffeic acid
3-O-methyltransferase 3
(S-adenosysl-L-methionine:caffeic acid
3-O-methyltransferase 1) (COMT-3) (CAOMT-3) , partial
(32%)
Length = 841
Score = 27.7 bits (60), Expect = 5.1
Identities = 16/49 (32%), Positives = 25/49 (50%), Gaps = 4/49 (8%)
Frame = +2
Query: 174 FKGVWKQ-KFDTSK---TKDYDFDLLNGKSVKVPFMTSKNDQFISSLDG 218
++G W TSK K +FDL +GK++ +PF S +F+ G
Sbjct: 668 WRGPWCHLNIGTSKYPYIKGLNFDLPHGKNMPLPFWVSMGREFLKGAQG 814
>TC223205
Length = 448
Score = 27.3 bits (59), Expect = 6.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 62 EGPTQNQLLSFLQSESTGDLKSLCSQVVSSVLSDGARAGGPCLSY 106
+GPTQ ++ + S+ D K +CS V + + G GG C S+
Sbjct: 36 DGPTQQKIHAIDVSKEEVDGK-ICSDEVPATIGAGDLDGGDCFSH 167
>TC209489
Length = 623
Score = 27.3 bits (59), Expect = 6.7
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 4/37 (10%)
Frame = +2
Query: 177 VWKQKFDTSKTKDYDFD----LLNGKSVKVPFMTSKN 209
VW F+T++ +D L+NG++ K F TSKN
Sbjct: 86 VWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKN 196
>AF050459 similar to GP|21743571|gb DEMETER protein {Arabidopsis thaliana},
partial (0%)
Length = 439
Score = 26.9 bits (58), Expect = 8.7
Identities = 13/37 (35%), Positives = 20/37 (53%)
Frame = +3
Query: 3 PQKRKRTKKNLIGKSLTKFTNVSLNITKHLLSNQKLN 39
P KRK +KN + K+ T T + +TK + + LN
Sbjct: 177 PVKRKYVRKNALNKTSTPPTEETGELTKEMSCKRSLN 287
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.133 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,948,904
Number of Sequences: 63676
Number of extensions: 119252
Number of successful extensions: 598
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of query: 249
length of database: 12,639,632
effective HSP length: 95
effective length of query: 154
effective length of database: 6,590,412
effective search space: 1014923448
effective search space used: 1014923448
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC122166.9