BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122166.6 - phase: 0 /pseudo
(1091 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 306 4e-83
CO982349 207 2e-53
BI972659 135 8e-32
TC213164 133 4e-31
AW757033 124 2e-28
BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase... 120 4e-27
TC231922 117 2e-26
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 110 3e-24
AI496436 104 2e-23
CA936755 100 3e-23
TC222557 69 3e-22
BI321779 103 3e-22
TC233392 97 5e-20
TC221865 95 1e-19
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 62 3e-19
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 92 1e-18
CO986021 87 3e-17
CO979823 87 3e-17
TC213061 86 9e-17
CO984521 86 9e-17
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
(Fragment) , partial (59%)
Length = 1077
Score = 306 bits (783), Expect = 4e-83
Identities = 149/304 (49%), Positives = 203/304 (66%)
Frame = +1
Query: 494 LDGILITNEVVDEARKSKKDLLLFKVDFEKAYDSVDWGYLDEVMGSMTFPTVW*KWIKEC 553
L LI NEV+DEA++S K L+FKVD+EKAYDSV W +L +M M F W KWI+EC
Sbjct: 1 LHSALIANEVIDEAKRSNKSCLVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWIEEC 180
Query: 554 VGTATASVLVNGCPTDEFFLERGLRQGDPLSPFLFLLAAEGLNVLMKALVDAGLFKGYSV 613
V +A+ SVLVNG PT EF +RGLRQGDPL+PFLF + AEGLN LM+ V+ L+K Y V
Sbjct: 181 VKSASISVLVNGSPTAEFLPQRGLRQGDPLTPFLFNIVAEGLNGLMRRAVEENLYKPYLV 360
Query: 614 GRADPVVVSHLQFADDTLLIGNKSWANVRALRAGLILLEAMSGLKVNFHKSSLVGVNITG 673
G A+ V +S LQ+ADDT+ G + NV A++ L E +S L++NF KS +T
Sbjct: 361 G-ANGVPISILQYADDTIFFGEAAKENVEAIKVILRSFELVSNLRINFAKSCFGVFGVTD 537
Query: 674 SWLSEAASVLGCKVGKIPFLYLGLSIGGDPRRLLFWEPVVNRIKNRLSGWQSRFLSFGGR 733
W EAA+ L C + PF+YLG+ IG + RR W+ ++ + + +LS W+ R +SFGGR
Sbjct: 538 QWKQEAANYLHCSLLAFPFIYLGIPIGANSRRCHMWDSIIRKCERKLSKWK*RHISFGGR 717
Query: 734 LVLLKFVLTALPVYALSFFKAPSGIISSIESLFNKFFWGGGEDKRKISWIRWDTLSLRKE 793
+ L+K VLT++P+Y SFF+ P ++ + + F WGGG D++KISWIRW+ L L KE
Sbjct: 718 VTLIKSVLTSIPIYFFSFFRVPQSVVDKLVKI*RTFLWGGGPDQKKISWIRWEKLCLPKE 897
Query: 794 YGGL 797
GG+
Sbjct: 898 RGGI 909
>CO982349
Length = 795
Score = 207 bits (527), Expect = 2e-53
Identities = 99/242 (40%), Positives = 152/242 (61%)
Frame = +3
Query: 549 WIKECVGTATASVLVNGCPTDEFFLERGLRQGDPLSPFLFLLAAEGLNVLMKALVDAGLF 608
WI+ C+ +A+ S+LVN P +EF +RGLRQGDPL+P LF + AEGL LM+ VD F
Sbjct: 69 WIRGCLHSASVSILVNESPINEFSPQRGLRQGDPLAPLLFNIVAEGLTGLMREAVDRKRF 248
Query: 609 KGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRALRAGLILLEAMSGLKVNFHKSSLVG 668
+ VG+ + VS LQ+ADDT+ + N++ ++ L E SGLK+NF +S
Sbjct: 249 NSFLVGK-NKEPVSILQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESRFGA 425
Query: 669 VNITGSWLSEAASVLGCKVGKIPFLYLGLSIGGDPRRLLFWEPVVNRIKNRLSGWQSRFL 728
+ W EAA L C + +PF YLG+ I +PR +P++ + + +L+ W+ R +
Sbjct: 426 IWKPDHWCKEAAEFLNCSMLSMPFSYLGIPIEANPRCREI*DPIIRKCETKLARWKQRHI 605
Query: 729 SFGGRLVLLKFVLTALPVYALSFFKAPSGIISSIESLFNKFFWGGGEDKRKISWIRWDTL 788
S GGR+ L+ +LTALP+Y SFF+APS ++ + ++ KF WGGG +R+I+W++W+T+
Sbjct: 606 SLGGRVTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSXQRRIAWVKWETV 785
Query: 789 SL 790
L
Sbjct: 786 CL 791
>BI972659
Length = 453
Score = 135 bits (341), Expect = 8e-32
Identities = 63/151 (41%), Positives = 91/151 (59%)
Frame = +1
Query: 633 IGNKSWANVRALRAGLILLEAMSGLKVNFHKSSLVGVNITGSWLSEAASVLGCKVGKIPF 692
+G SW N+ L++ L E +SGL++N+ KS V +W +AA +L C+ IPF
Sbjct: 1 VGEASWDNIIVLKSMLRGFEMVSGLRINYAKSQFGIVGFQPNWAHDAAQLLNCRQLDIPF 180
Query: 693 LYLGLSIGGDPRRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFF 752
YLG+ I + WEP++N+ K +LS W ++LS GGR+ L+K VL ALP+Y LSFF
Sbjct: 181 HYLGMPIAVKASSRMVWEPLINKFKAKLSKWNQKYLSMGGRVTLIKSVLNALPIYLLSFF 360
Query: 753 KAPSGIISSIESLFNKFFWGGGEDKRKISWI 783
K P I+ + SL F WGG + +ISW+
Sbjct: 361 KIPQRIVDKLVSLQRTFMWGGNQHHNRISWV 453
>TC213164
Length = 446
Score = 133 bits (335), Expect = 4e-31
Identities = 59/135 (43%), Positives = 96/135 (70%)
Frame = +3
Query: 371 LIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIKSFWHEMKAEIVRFVTEFHRNRKLSKG 430
L+ F ++E++A +WD + K PGPDG+N FIK FW +K +++RF+ EF+ N K
Sbjct: 18 LVARFEKKEVRATMWDRGNAKSPGPDGLNFKFIKEFWDILKTDLLRFLDEFYANGVFLKR 197
Query: 431 INSRFIALIPKVASPQSLNEFRPISLVGSLYKILAKILANRLRQVIGSVVSEVQSAFVKN 490
N+ F+ALIPKV P SLNE++PISL+G +YKI+AK+L+ R ++V+ +++ E Q+ F++
Sbjct: 198 SNAFFLALIPKVHDP*SLNEYKPISLIGCIYKIVAKLLSGRHKKVLPTIIDERQTVFMEG 377
Query: 491 RQILDGILITNEVVD 505
R L ++I NE+++
Sbjct: 378 RHTLHNVVIANEIME 422
>AW757033
Length = 441
Score = 124 bits (311), Expect = 2e-28
Identities = 65/146 (44%), Positives = 89/146 (60%)
Frame = -2
Query: 568 TDEFFLERGLRQGDPLSPFLFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFA 627
T EF RGLRQGDPL+P LF +AAEGL LM+ V +K ++VG+ V S LQ+A
Sbjct: 440 TREFSPHRGLRQGDPLAPLLFNIAAEGLTGLMREAVARNHYKSFAVGKYKKPV-SILQYA 264
Query: 628 DDTLLIGNKSWANVRALRAGLILLEAMSGLKVNFHKSSLVGVNITGSWLSEAASVLGCKV 687
DDT+ G + NVR ++ L E SGLK+NF KS +++ W EAA + C +
Sbjct: 263 DDTIFFGEATMENVRVIKTILRGFELASGLKINFAKSRFGAISVPD*WRKEAAEFMNCSL 84
Query: 688 GKIPFLYLGLSIGGDPRRLLFWEPVV 713
+PF YLG+ IG +PRR W+P++
Sbjct: 83 LSLPFSYLGIPIGANPRRRETWDPII 6
>BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase - beet
retrotransposon (fragment), partial (15%)
Length = 376
Score = 120 bits (300), Expect = 4e-27
Identities = 55/88 (62%), Positives = 67/88 (75%)
Frame = -2
Query: 380 IKAAVWDCDSYKIPGPDGINLGFIKSFWHEMKAEIVRFVTEFHRNRKLSKGINSRFIALI 439
IK+AVW C S K PGPDG+N FIK FW +K +I+RF+ EFH N KG N+ FIALI
Sbjct: 375 IKSAVWQCGSVKSPGPDGLNFKFIKHFWERLKPDIIRFLNEFHANGIFPKGGNASFIALI 196
Query: 440 PKVASPQSLNEFRPISLVGSLYKILAKI 467
PKV PQ+LN+FRPISL+G +YKI+AKI
Sbjct: 195 PKVKHPQALNDFRPISLIGCVYKIVAKI 112
>TC231922
Length = 803
Score = 117 bits (294), Expect = 2e-26
Identities = 66/243 (27%), Positives = 117/243 (47%), Gaps = 5/243 (2%)
Frame = -3
Query: 848 SSWWREIVRIRDGIGEGGEGWFGSCVRR---RVGDGAETDFWWDCWCGD-VSLCERFSRL 903
S WW+++ R+ + + F S + RVG G + FW D W + +L +++++L
Sbjct: 777 SHWWKDLRRLYN------QPDFHSIHQNMVWRVGCGDKIKFWQDSWLSEGCNLQQKYNQL 616
Query: 904 YDLTVNKLISVRNMILLGVDVGGEALRWRRRLWAWEEELVEEFXALLLTVSLQESVTDRW 963
Y ++ +++ M + +WRRRL+ +E + +F + +S+Q D
Sbjct: 615 YTISRQ*NLTISKMGKFSQNARSWEFKWRRRLFDYEYAMAVDFMNEISGISIQNQAHDSM 436
Query: 964 IWLPTQDDGYSVRGAYDMLTSQEQPHLHQNL-ELIWHTQVPLKVSILAWRLLRDRLPTKD 1022
W YS + AY +L P + + +++WH ++P + ++ +WRL DRLPT+
Sbjct: 435 FWKADSSGVYSTKSAYRLLMPSISPAPSRRIFQILWHLKIPPRAAVFSWRLFLDRLPTRG 256
Query: 1023 NLANRGILPLEARMCVSSCGNEEDVNHLFLSCATFSALWPLVQAWLGVVGVDSQSTSDHL 1082
NL+ R I P++ MC E+ HLF C LW W+ V+G + H
Sbjct: 255 NLSRRSI-PIQDIMCPLCGCQHEEAGHLFFHCKMTKGLWWESMRWIRVIGALPADPASHF 79
Query: 1083 VQF 1085
+QF
Sbjct: 78 IQF 70
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 110 bits (276), Expect = 3e-24
Identities = 64/158 (40%), Positives = 88/158 (55%), Gaps = 7/158 (4%)
Frame = +2
Query: 750 SFFKAPSGIISSIESLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLAL 809
SFF P II+ +ESL +F WGG D RKI+W+ W T+ L K GGLG+ LR FN L
Sbjct: 5 SFFSLP*KIIAKLESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTL 184
Query: 810 LGKWCWRLLLEKEALWRKVLVARYGVADGGLEDG--GRSCSSWWREIVR---IRDGIGEG 864
LGKW W L ++ W KVL ++YG LE+G G S+WW+++++ ++ I
Sbjct: 185 LGKWRWDLFYIQQEPWAKVLQSKYG-GWRALEEGSSGSKDSAWWKDLIKTQQLQRNIPLK 361
Query: 865 GEG-WFGSCVRRRVGDGAETDFWWDCWCG-DVSLCERF 900
E W +VG G FW D W D+SL ++F
Sbjct: 362 RETIW-------KVGGGDRIKFWEDLWTNTDLSLRDKF 454
>AI496436
Length = 414
Score = 104 bits (259), Expect(2) = 2e-23
Identities = 48/112 (42%), Positives = 70/112 (61%)
Frame = +1
Query: 652 EAMSGLKVNFHKSSLVGVNITGSWLSEAASVLGCKVGKIPFLYLGLSIGGDPRRLLFWEP 711
E SGLK+NF KS + + W EAA L V +PF+YLG+ IG + R WEP
Sbjct: 19 ELSSGLKINFAKSQFGTICKSDIWRKEAADYLNSSVLSMPFVYLGIPIGANSRHSDVWEP 198
Query: 712 VVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPSGIISSIE 763
VV + + +L+ W+ +++SFGGR+ L+ VLTALP+Y LSFF+ P ++ +
Sbjct: 199 VVRKCERKLASWKQKYVSFGGRVTLINSVLTALPIYLLSFFRIPDKVVDKAD 354
Score = 24.3 bits (51), Expect(2) = 2e-23
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 768 KFFWGGGEDKRKISW 782
+F WGG + RKI+W
Sbjct: 368 RFLWGGDLE*RKIAW 412
>CA936755
Length = 424
Score = 99.8 bits (247), Expect(2) = 3e-23
Identities = 39/90 (43%), Positives = 57/90 (63%)
Frame = -2
Query: 139 FLLSEEWCMVWPTCLQVAQLRGLSDHCPIVLTVDEKNWGPRPVRLLKCWQDMPGYSDFVR 198
FL+SE+W + WP Q R SDHCPI++ + +WGP+P R++ W GY VR
Sbjct: 294 FLVSEQWLLSWPDSSQYTLPRDFSDHCPIIMQTKKVDWGPKPFRVVDWWLHQKGYQRLVR 115
Query: 199 EKWGSFQVSGWGGFVLKEKLKLMKAALKEW 228
E W + Q GWGG +LK KL+++K ++K+W
Sbjct: 114 ETWSAEQQPGWGGILLKNKLRMLKLSIKQW 25
Score = 28.5 bits (62), Expect(2) = 3e-23
Identities = 13/36 (36%), Positives = 18/36 (49%)
Frame = -1
Query: 104 FNDFIEDRVLINLPLCGRKFTWYNGDGRSMSTLDRF 139
FN +I + L + G +TW + R S LDRF
Sbjct: 400 FNTWISEMELQEIKCVGSTYTWIRPNARVKSRLDRF 293
>TC222557
Length = 1002
Score = 69.3 bits (168), Expect(2) = 3e-22
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Frame = +1
Query: 975 VRGAYDMLTSQEQP-HLHQNLELIWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLE 1033
++GA+ + +EQ L + LE +W ++PLK + AWRL+++R+PTK NL R + L
Sbjct: 370 LQGAHTVCY*KEQLIRLDEALEDLWQLKIPLKATTFAWRLIKERIPTKGNLWRRRV-QLN 546
Query: 1034 ARMCVSSCGNEEDVNHLFLSCATFSALWPLVQAWLGVVGVDSQSTSDHLVQ 1084
MC EE+ +HLF +C LW AW VGV S + +Q
Sbjct: 547 NLMCPFCNRQEEEASHLFFNCPRILPLWWESLAWTKTVGVFSPIPRQNYMQ 699
Score = 55.5 bits (132), Expect(2) = 3e-22
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = +3
Query: 867 GWFGSCVRRRVGDGAETDFWWDCWCGDVS-LCERFSRLYDLTVNKLISVRNMILLGVDVG 925
G F S + +VG G + FW DCW + L ++ RLY+++ + + M +V
Sbjct: 45 GLFQSAIDWKVGCGDKIRFWEDCWLMEQEPLRAKYPRLYNISCQQQKLILVMGFHSANVW 224
Query: 926 GEALRWRRRLWAWEEELVEEFXALLLTVSLQESVTDRWIWLPTQDDGYSVRGAYDML 982
L WRR L+ E + F + + D W+W P + +S R AY ML
Sbjct: 225 EWKLEWRRHLFDNEVQAAASFLDDISWGHIDRWTLDCWVWKPEPNGQFSTRSAYRML 395
>BI321779
Length = 421
Score = 103 bits (258), Expect = 3e-22
Identities = 54/122 (44%), Positives = 73/122 (59%)
Frame = +2
Query: 345 FLAPIMTRPSVGHLQFRKLSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIK 404
F I RP + ++F S+ + LI+ F EEIK + DC+S K PGPDG +L IK
Sbjct: 5 FQEQIYGRPKLNGVEFLSFSNEDNAMLIQDFEVEEIKKVI*DCESSKSPGPDGYSLLLIK 184
Query: 405 SFWHEMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKIL 464
FW +K E++ F EFH+ L +G N FIALI K +P + ++ PISLVG LYKI+
Sbjct: 185 IFWEVIKEEVINFFKEFHKFDFLPRGTNRSFIALIAKCDNPLDIGQYCPISLVGCLYKIV 364
Query: 465 AK 466
K
Sbjct: 365 *K 370
>TC233392
Length = 1145
Score = 96.7 bits (239), Expect = 5e-20
Identities = 52/138 (37%), Positives = 74/138 (52%), Gaps = 5/138 (3%)
Frame = -1
Query: 955 LQESVTDRWIWLPTQDDGYSVRGAYDMLTSQEQPHLHQN-----LELIWHTQVPLKVSIL 1009
+Q+ V D W+W ++ YS R AY +L Q HL L+ +W ++P K SI
Sbjct: 674 IQQQVPDTWVWKHEPNELYSTRSAYKLL----QGHLEGEDQDGALQDLWKLKIPAKASIF 507
Query: 1010 AWRLLRDRLPTKDNLANRGILPLEARMCVSSCGNEEDVNHLFLSCATFSALWPLVQAWLG 1069
AWRL+RDRLPTK NL R ++ LE +C EED +H+FL C LW Q W+
Sbjct: 506 AWRLIRDRLPTKSNLHRRQVV-LEDSLCPFCRIREEDASHIFLECNKIRPLWWESQTWVR 330
Query: 1070 VVGVDSQSTSDHLVQFIN 1087
+GV + H +Q ++
Sbjct: 329 SLGVSPINKRQHFLQHVH 276
>TC221865
Length = 1045
Score = 95.1 bits (235), Expect = 1e-19
Identities = 58/211 (27%), Positives = 100/211 (46%), Gaps = 2/211 (0%)
Frame = -3
Query: 876 RVGDGAETDFWWDCWCGD-VSLCERFSRLYDLTVNKLISVRNMILLGVDVGGEALRWRRR 934
+VG G + FW D G+ +L ++ R+Y ++ + ++ + +WRR
Sbjct: 926 KVGCGDKFRFWEDKLVGEGETLMRKYPRMYQISCQQQQLIQQVGSHTETTWEWKFQWRRP 747
Query: 935 LWAWEEELVEEFXALLLTVSLQESVTDRWIWLPTQDDGYSVRGAYDMLTSQE-QPHLHQN 993
L+ E + F + + +TD W+W + YS R AY ++ + + +
Sbjct: 746 LFDNEVDTTIGFLEDISRFPIHRHLTDCWVWKSEPNGHYSTRSAYHLMQHEAAKANTDPA 567
Query: 994 LELIWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCVSSCGNEEDVNHLFLS 1053
E IW ++P K +I A RL++DRLPTK+NL R + L +C+ EE+ +HLF S
Sbjct: 566 FEEIWKLKIPAKAAIFA*RLVKDRLPTKNNLRRRQV-QLNGTLCLFCRNYEEEASHLFFS 390
Query: 1054 CATFSALWPLVQAWLGVVGVDSQSTSDHLVQ 1084
C +W +W+ G S + H +Q
Sbjct: 389 CTKTQPVWWESLSWINTSGAFSANPRHHFLQ 297
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 61.6 bits (148), Expect(2) = 3e-19
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Frame = -3
Query: 493 ILDGILITNEVVDEA-RKSKKDLLLFKVDFEKAYDSVDWGYLDEVMGSMTFPTVW*KWIK 551
I D +T+EV++ +K L K+D KA+D++D +L V+ + + WI+
Sbjct: 834 IKDCTCVTSEVINMLDKKVFGGNLALKIDIVKAFDTLDRDFLISVLNKFGYSHTFCNWIR 655
Query: 552 ECVGTATASVLVNGCPTDEFFLERGLRQGDPLSPFLF 588
+ +A S+ VNG P F +RG+RQGDPLSP L+
Sbjct: 654 VILLSAKLSISVNGEPVGFFSCQRGVRQGDPLSPSLY 544
Score = 53.1 bits (126), Expect(2) = 3e-19
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Frame = -2
Query: 622 SHLQFADDTLLIGNKSWANVRALRAGLILLEAMSGLKVNFHKSSLVGVNITGSWLSEAAS 681
SH+ ADD ++ + NV L L + G ++ HKS + +I G L +
Sbjct: 451 SHVMHADDIMIFCKGTSRNVHNLINFFQLYKDSFGQVISKHKSKIFIGSIPGQRLRVISD 272
Query: 682 VLGCKVGKIPFLYLGLSI--GGDPRRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKF 739
+L IPF Y G+ I G RR L+ V ++IK +L+ W+ LS GR+ L+
Sbjct: 271 LLQYFHSDIPFNYFGVPIFKGKPTRRHLYC--VADKIKCKLASWKGSILSIMGRIQLVNS 98
Query: 740 VLTALPVYALSFF 752
V+ + +Y+ S +
Sbjct: 97 VIHGMLLYSFSVY 59
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 92.4 bits (228), Expect = 1e-18
Identities = 41/98 (41%), Positives = 58/98 (58%)
Frame = +2
Query: 731 GGRLVLLKFVLTALPVYALSFFKAPSGIISSIESLFNKFFWGGGEDKRKISWIRWDTLSL 790
GGR+ L+K VL+ALP+ LSFFK P I+ + +L +F WGG + +I W++W +
Sbjct: 5 GGRVTLIKSVLSALPIXXLSFFKIPQRIVDKLVTLQRQFLWGGTQHHNRIPWVKWADICN 184
Query: 791 RKEYGGLGVTRLREFNLALLGKWCWRLLLEKEALWRKV 828
K GGLG+ L FN AL G+W W L LW ++
Sbjct: 185 PKIDGGLGIKDLSNFNAALRGRWIWGLASNHNQLWARL 298
>CO986021
Length = 900
Score = 87.4 bits (215), Expect = 3e-17
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 2/158 (1%)
Frame = -1
Query: 930 RWRRRLWAWEEELVEEFXALLLTVSLQESVTDRWIWLPTQDDGYSVRGAYDMLTSQEQPH 989
+WRR L+ E E F + +S+ + + D +W YS + AY +L +P
Sbjct: 876 KWRRNLFDHENEQAIAFMDDISAISIHQQLQDSMLWKADPTGIYSTKSAYRLLLPNNRPG 697
Query: 990 LHQ-NLELIWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCVSSCGN-EEDV 1047
H N +++W ++P + + +WRL RDRL + NL R + L+ MC CGN +E+
Sbjct: 696 QHSSNFKILWKLKIPPRAELFSWRLFRDRLSIRANLLRRHV-ALQDIMC-PLCGNHQEEA 523
Query: 1048 NHLFLSCATFSALWPLVQAWLGVVGVDSQSTSDHLVQF 1085
HLF C LW W +G + H +QF
Sbjct: 522 GHLFFHCRMTIGLWWESMNWTRTLGAFLDDPAAHFIQF 409
>CO979823
Length = 853
Score = 87.4 bits (215), Expect = 3e-17
Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Frame = -2
Query: 929 LRWRRRLWAWEEELVEEFXALLLTVSLQESVTDRWIWLPTQDDGYSVRGAYDMLTSQEQP 988
L WRR E + + F + + D+W+W P YS + Y +L +
Sbjct: 798 LNWRRPXXDSEIAMADSFLGEITQQQIHPQREDKWLWKPEPGGHYSTKSGYHVLWGELTE 619
Query: 989 HLHQ-NLELIWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCVSSCGN-EED 1046
+ + IW ++P K ++ AWRL+RDRLPTK NL R ++ + M C N EE
Sbjct: 618 EIQDADFAEIWKLKIPTKAAVFAWRLVRDRLPTKSNLRRRQVMVQD--MVCPLCNNIEEG 445
Query: 1047 VNHLFLSCATFSALWPLVQAWLGVVGVDSQSTSDHLVQF 1085
HLF +C LW +W+ + Q+ H +Q+
Sbjct: 444 AAHLFFNCTKTLPLWWESMSWVNLKTAMPQTPRQHFLQY 328
>TC213061
Length = 823
Score = 85.9 bits (211), Expect = 9e-17
Identities = 49/166 (29%), Positives = 82/166 (48%), Gaps = 3/166 (1%)
Frame = +2
Query: 922 VDVGGE-ALRWRRRLWAWEEELVEEFXALLLTVSLQESVTDRWIWLPTQDDGYSVRGAYD 980
++ G E +WRR L+ E E++ F + ++ + D+W+W Y R AY
Sbjct: 8 IETGWEWQFQWRRPLFDSEIEMLVAFIQEVEGHKIRSDIEDQWVWAAESSGSYLARSAYR 187
Query: 981 MLTSQEQPHLHQNLEL--IWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCV 1038
++ + P Q+ E +W +VP+KV++ AWRLL+D LPT+DNL + + L +C
Sbjct: 188 VIR-EGIPEEEQDREFKELWKLKVPMKVTMFAWRLLKDILPTRDNLRRKRV-ELHEYVCP 361
Query: 1039 SSCGNEEDVNHLFLSCATFSALWPLVQAWLGVVGVDSQSTSDHLVQ 1084
+E +HLF C+ +W +W+ +VG H Q
Sbjct: 362 LCRSMDESASHLFFHCSKILPIWWESLSWVKLVGAFPHHPRHHFHQ 499
>CO984521
Length = 716
Score = 85.9 bits (211), Expect = 9e-17
Identities = 50/152 (32%), Positives = 76/152 (49%), Gaps = 4/152 (2%)
Frame = -2
Query: 939 EEELVEEFXALLLTVSLQESVTDRWIWLPTQDDGYSVRGAYDML----TSQEQPHLHQNL 994
E ++ F L +++ ++D+W W YS + AY L +EQ + L
Sbjct: 712 EIDMAVAFLQQLEGFTIRPELSDQWKWAAEPSGCYSTKSAYKALHHVTVGEEQDGKFKEL 533
Query: 995 ELIWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCVSSCGNEEDVNHLFLSC 1054
W +VPLKV+I AWRL++D+LPTK NL + + L+ +C EE +HLF C
Sbjct: 532 ---WKLRVPLKVAIFAWRLIQDKLPTKANLRKKRV-ELQEYLCPLCRSVEETASHLFFHC 365
Query: 1055 ATFSALWPLVQAWLGVVGVDSQSTSDHLVQFI 1086
+ S LW Q+W+ ++GV H Q I
Sbjct: 364 SKVSPLWWESQSWVNMMGVFPYQPDQHFSQHI 269
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.140 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,007,840
Number of Sequences: 63676
Number of extensions: 910472
Number of successful extensions: 4989
Number of sequences better than 10.0: 152
Number of HSP's better than 10.0 without gapping: 4843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4926
length of query: 1091
length of database: 12,639,632
effective HSP length: 107
effective length of query: 984
effective length of database: 5,826,300
effective search space: 5733079200
effective search space used: 5733079200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Medicago: description of AC122166.6