TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122166.1 + phase: 0 
         (55 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC222837                                                               26  3.7
TC228884                                                               25  6.4
TC231969 similar to GB|AAM55302.1|28624758|AY115841 auxin influx...    25  6.4
TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and...    25  8.3

>TC222837 
          Length = 952

 Score = 26.2 bits (56), Expect = 3.7
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +2

Query: 13  GQLYVAISRVTSRGGLKILINDDDGD 38
           G+L +A + + SRG LK+ +++DDGD
Sbjct: 488 GRLLLAYNTI-SRGVLKLALSEDDGD 562


>TC228884 
          Length = 1200

 Score = 25.4 bits (54), Expect = 6.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 3    VWIHLCYFSHGQLY 16
            V ++LCYF HG LY
Sbjct: 1089 VVMYLCYFPHGNLY 1130


>TC231969 similar to GB|AAM55302.1|28624758|AY115841 auxin influx carrier
           protein {Medicago truncatula;} , partial (32%)
          Length = 644

 Score = 25.4 bits (54), Expect = 6.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 6   HLCYFSHGQLYVAISRVTSRGGLKILINDDDGD 38
           H C+ S+  + + +S+   RG + +L    DGD
Sbjct: 205 HPCFCSYAHIQICLSKTECRGEIALLYP*LDGD 303


>TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and
           recombination protein PIF1, mitochondrial precursor,
           partial (8%)
          Length = 596

 Score = 25.0 bits (53), Expect = 8.3
 Identities = 15/43 (34%), Positives = 21/43 (47%)
 Frame = +2

Query: 10  FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVS 52
           F  G +YVA+SRV S  GL +   +      D   S  YR ++
Sbjct: 74  FGCGMVYVALSRVRSLEGLHLSAFNRSKIKVDQRVSRFYRSLA 202


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,532,119
Number of Sequences: 63676
Number of extensions: 21555
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of query: 55
length of database: 12,639,632
effective HSP length: 31
effective length of query: 24
effective length of database: 10,665,676
effective search space: 255976224
effective search space used: 255976224
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)