BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122165.12 + phase: 1 /pseudo
(150 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC206313 similar to GB|AAP13363.1|30023660|BT006255 At5g55710 {A... 283 2e-77
TC219759 similar to UP|O82251 (O82251) Expressed protein, partia... 145 9e-36
TC206314 similar to GB|AAP13363.1|30023660|BT006255 At5g55710 {A... 37 0.004
BI470685 33 0.051
TC228427 UP|Q8H6S7 (Q8H6S7) Resistance protein KR3, complete 29 0.73
AW755556 homologue to GP|22335691|dbj cullin-like protein1 {Pisu... 28 1.6
TC205464 weakly similar to GB|AAP42752.1|30984578|BT008739 At1g5... 27 3.6
TC222917 similar to UP|Q9SR03 (Q9SR03) Ankyrin-like protein, par... 27 3.6
AW756232 27 3.6
BQ094531 27 4.8
BE800616 weakly similar to GP|21321024|db chloride channel {Oryz... 26 6.2
TC206915 similar to UP|Q945M8 (Q945M8) AT4g31460/F3L17_30, parti... 26 6.2
TC215784 weakly similar to UP|P93378 (P93378) Tumor-related prot... 26 6.2
TC210369 similar to UP|Q9SR03 (Q9SR03) Ankyrin-like protein, par... 26 6.2
BE611728 similar to GP|18700139|gb| At1g64350/F15H21_2 {Arabidop... 26 6.2
TC224926 homologue to UP|Q41119 (Q41119) Cyclophilin , complete 26 8.1
TC227368 similar to UP|Q9M7D2 (Q9M7D2) Root border cell-specific... 26 8.1
CA783262 similar to GP|9369361|gb|A F10A5.8 {Arabidopsis thalian... 26 8.1
TC231228 similar to UP|Q9FN19 (Q9FN19) Arabidopsis thaliana geno... 26 8.1
BI498289 26 8.1
>TC206313 similar to GB|AAP13363.1|30023660|BT006255 At5g55710 {Arabidopsis
thaliana;} , partial (76%)
Length = 1064
Score = 283 bits (725), Expect = 2e-77
Identities = 136/148 (91%), Positives = 145/148 (97%)
Frame = +3
Query: 3 DRLISALCYFYPFFDGIQYGKFVITQFYPIQAIVQPLIPAIRVFKSFPFNGFLVFLTLYF 62
DRLISALCYFYPFFDGIQYGK+VITQFYP+QAIVQPL+PAIRVFKSFPFNGFLVFLTLYF
Sbjct: 279 DRLISALCYFYPFFDGIQYGKYVITQFYPLQAIVQPLVPAIRVFKSFPFNGFLVFLTLYF 458
Query: 63 FVVRNPNFSKYVRFNTMQAIVLDVLLIFPDLLERGFNPRGGFGLDLLMSLDSTVFLFLLV 122
VVRNPNFSKYVRFNTMQA+VLDVLLIFPDLLERGFNP+ G GLDL+MSLDSTVFLFLLV
Sbjct: 459 VVVRNPNFSKYVRFNTMQAVVLDVLLIFPDLLERGFNPKDGLGLDLIMSLDSTVFLFLLV 638
Query: 123 CLIYGSSSCILGQLPRLPIVADAADRQV 150
CLIYGSSSC+LGQ+PRLPIVA+AADRQV
Sbjct: 639 CLIYGSSSCLLGQIPRLPIVAEAADRQV 722
>TC219759 similar to UP|O82251 (O82251) Expressed protein, partial (66%)
Length = 736
Score = 145 bits (365), Expect = 9e-36
Identities = 66/150 (44%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Frame = +3
Query: 2 SDRLISALCYFYPFFDGIQYGKFVITQFYPIQAIVQPLIPAIRVFKSFPFNGFLVFLTLY 61
++RLIS Y PFF+ +QYG++++ Q + + P++P + ++S P++ F+ F LY
Sbjct: 174 TERLISIASYALPFFNSLQYGRYLLAQNPTLAVLFDPIVPLLAFYRSIPYSSFVAFFALY 353
Query: 62 FFVVRNPNFSKYVRFNTMQAIVLDVLLIFPDLLERGFNP-RGGFGLDLLMSLDSTVFLFL 120
+VRNP+F +YVRFN MQA+ LDVLL+ P L R F+P RGG +L+ + +F+F
Sbjct: 354 LGIVRNPSFPRYVRFNAMQAVTLDVLLVLPLLFHRIFSPARGG---PILVWSSNAIFIFS 524
Query: 121 LVCLIYGSSSCILGQLPRLPIVADAADRQV 150
L+C +Y +SC+LG+ P LP VADAA RQ+
Sbjct: 525 LICFVYSVASCVLGRTPHLPFVADAASRQI 614
>TC206314 similar to GB|AAP13363.1|30023660|BT006255 At5g55710 {Arabidopsis
thaliana;} , partial (10%)
Length = 321
Score = 37.0 bits (84), Expect = 0.004
Identities = 16/19 (84%), Positives = 19/19 (99%)
Frame = +3
Query: 132 ILGQLPRLPIVADAADRQV 150
+LGQ+PRLPIVA+AADRQV
Sbjct: 3 LLGQIPRLPIVAEAADRQV 59
>BI470685
Length = 391
Score = 33.1 bits (74), Expect = 0.051
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = -1
Query: 76 FNTMQAIVLDVLLIFPDLLERGFNPRGGFGLDLLMSLDSTVFLFLLVCLIYGSSSC 131
+N+M+++VL FP L+E F G DL++S D+++FLF+LV Y S C
Sbjct: 160 YNSMKSVVL*----FPLLVEFFFISLG----DLVLS*DNSIFLFMLVLFRYLRSEC 17
>TC228427 UP|Q8H6S7 (Q8H6S7) Resistance protein KR3, complete
Length = 2358
Score = 29.3 bits (64), Expect = 0.73
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 29 FYPIQAIVQPLIPAIRVFKSFPFNGF-LVFLTLYFFVV 65
+Y IQ ++ LI I FKSFPF +FLT +F ++
Sbjct: 1305 YYIIQDLIVTLINFIICFKSFPFKQLNSIFLTQFFHLM 1192
>AW755556 homologue to GP|22335691|dbj cullin-like protein1 {Pisum sativum},
partial (12%)
Length = 442
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/42 (30%), Positives = 24/42 (56%)
Frame = +3
Query: 46 FKSFPFNGFLVFLTLYFFVVRNPNFSKYVRFNTMQAIVLDVL 87
F PF F L++++F N N Y++ N+++ +LDV+
Sbjct: 216 FFMLPFFSF*TLLSVFYFRKFNMNCYLYMQTNSLKRSILDVM 341
>TC205464 weakly similar to GB|AAP42752.1|30984578|BT008739 At1g57790
{Arabidopsis thaliana;} , partial (17%)
Length = 756
Score = 26.9 bits (58), Expect = 3.6
Identities = 12/27 (44%), Positives = 19/27 (69%)
Frame = -2
Query: 106 LDLLMSLDSTVFLFLLVCLIYGSSSCI 132
L +++SL+ FL LL +IYG+ +CI
Sbjct: 131 LSVIVSLNDFNFLLLLPGIIYGNRNCI 51
>TC222917 similar to UP|Q9SR03 (Q9SR03) Ankyrin-like protein, partial (17%)
Length = 650
Score = 26.9 bits (58), Expect = 3.6
Identities = 12/28 (42%), Positives = 15/28 (52%)
Frame = -3
Query: 5 LISALCYFYPFFDGIQYGKFVITQFYPI 32
LI ++C F F Q F IT F+PI
Sbjct: 147 LIKSICSFIKFLQQTQSRSFPITSFWPI 64
>AW756232
Length = 436
Score = 26.9 bits (58), Expect = 3.6
Identities = 21/56 (37%), Positives = 27/56 (47%), Gaps = 5/56 (8%)
Frame = +1
Query: 14 PFFDGIQYGKF---VITQFYPIQAIVQPLIPAIRVFKSFPFNGFLVFLT--LYFFV 64
PF D KF +TQ ++ QP+ V FP+NGF VF T L FF+
Sbjct: 10 PFVDTYHVSKFQPCCLTQLLSQFSMPQPIDDQF-VTLYFPYNGFFVFSTTPLAFFL 174
>BQ094531
Length = 399
Score = 26.6 bits (57), Expect = 4.8
Identities = 16/35 (45%), Positives = 18/35 (50%)
Frame = -1
Query: 56 VFLTLYFFVVRNPNFSKYVRFNTMQAIVLDVLLIF 90
VFL + V PNFS FNT + D LLIF
Sbjct: 396 VFLLIELLV---PNFSCSQNFNTQKLTQFDTLLIF 301
>BE800616 weakly similar to GP|21321024|db chloride channel {Oryza sativa
(japonica cultivar-group)}, partial (16%)
Length = 413
Score = 26.2 bits (56), Expect = 6.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 115 TVFLFLLVCLIYGSSSCILGQLPRL 139
T+F LL CLI +SC+L LP L
Sbjct: 121 TIFKILLACLISIFTSCLLFGLPWL 195
>TC206915 similar to UP|Q945M8 (Q945M8) AT4g31460/F3L17_30, partial (91%)
Length = 1186
Score = 26.2 bits (56), Expect = 6.2
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = -2
Query: 46 FKSFPFNGFLVFLTLYFFV 64
F+ FPF GFL+ LTL +V
Sbjct: 57 FRVFPFEGFLLLLTLSTWV 1
>TC215784 weakly similar to UP|P93378 (P93378) Tumor-related protein, partial
(57%)
Length = 870
Score = 26.2 bits (56), Expect = 6.2
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = -3
Query: 31 PIQAIVQPLIPAIRVFKSFPFNGFLVFLTLYFFVVRNPNFSKYVRFNTMQAIVLDVLLIF 90
PI +QP PA + K +VFL+L + + + ++ FNT A
Sbjct: 583 PIITNIQPKFPAQSLCKRGTERKHIVFLSLLNLEPIDNSVNPWIPFNTTSAQKPHPS*HL 404
Query: 91 PDLLERGFNPRGGFGLDL 108
+L GF GGF + L
Sbjct: 403 EELPHWGFVTSGGFPIRL 350
>TC210369 similar to UP|Q9SR03 (Q9SR03) Ankyrin-like protein, partial (43%)
Length = 997
Score = 26.2 bits (56), Expect = 6.2
Identities = 12/28 (42%), Positives = 15/28 (52%)
Frame = -2
Query: 5 LISALCYFYPFFDGIQYGKFVITQFYPI 32
LI ++C F F Q F IT F+PI
Sbjct: 576 LIKSICSFIKFLQQTQSCPFPITSFWPI 493
>BE611728 similar to GP|18700139|gb| At1g64350/F15H21_2 {Arabidopsis
thaliana}, partial (41%)
Length = 416
Score = 26.2 bits (56), Expect = 6.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 37 QPLIPAIRVFKSFPFNGFLVFLT 59
Q + P + F FP+ GFL F+T
Sbjct: 64 QSIAPQLFAFSLFPYMGFLYFIT 132
>TC224926 homologue to UP|Q41119 (Q41119) Cyclophilin , complete
Length = 1045
Score = 25.8 bits (55), Expect = 8.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 45 VFKSFPFNGFLVFLTLYFFVVRN 67
+ K FPF FL FL + VVR+
Sbjct: 703 ISKPFPFESFLSFLKYQYHVVRS 771
>TC227368 similar to UP|Q9M7D2 (Q9M7D2) Root border cell-specific protein,
partial (90%)
Length = 1203
Score = 25.8 bits (55), Expect = 8.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 123 CLIYGSSSCILGQLPRLPIVA 143
C+ +S CILG L RLPI+A
Sbjct: 561 CIFGEASQCILG*LWRLPILA 623
>CA783262 similar to GP|9369361|gb|A F10A5.8 {Arabidopsis thaliana}, partial
(20%)
Length = 457
Score = 25.8 bits (55), Expect = 8.1
Identities = 28/89 (31%), Positives = 36/89 (39%), Gaps = 2/89 (2%)
Frame = -2
Query: 44 RVFKSFPFNGFLVFLTLYF--FVVRNPNFSKYVRFNTMQAIVLDVLLIFPDLLERGFNPR 101
RV FP L L F F+ R Y A L L +FP LL FN
Sbjct: 384 RVLLCFPLLQLLELLLRAFKLFLQRRQAMGHY------HAFFLCPLQVFPRLL*LSFNVF 223
Query: 102 GGFGLDLLMSLDSTVFLFLLVCLIYGSSS 130
++ + + ST++LF LVC SS
Sbjct: 222 NSPKINAVF-ICSTLYLFELVCTCINLSS 139
>TC231228 similar to UP|Q9FN19 (Q9FN19) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K8K14 (AT5g67320/K8K14_4),
partial (27%)
Length = 1067
Score = 25.8 bits (55), Expect = 8.1
Identities = 13/31 (41%), Positives = 16/31 (50%)
Frame = -1
Query: 46 FKSFPFNGFLVFLTLYFFVVRNPNFSKYVRF 76
F S PF FL F++ FF +P F RF
Sbjct: 665 FFSIPFTFFLPFMSSLFF*PSSPTFILLFRF 573
>BI498289
Length = 301
Score = 25.8 bits (55), Expect = 8.1
Identities = 8/22 (36%), Positives = 15/22 (67%)
Frame = +2
Query: 48 SFPFNGFLVFLTLYFFVVRNPN 69
++ F F+++ TL+FF NP+
Sbjct: 107 TYLFYSFIIYFTLFFFFTSNPD 172
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.335 0.153 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,242,156
Number of Sequences: 63676
Number of extensions: 104520
Number of successful extensions: 1181
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of query: 150
length of database: 12,639,632
effective HSP length: 89
effective length of query: 61
effective length of database: 6,972,468
effective search space: 425320548
effective search space used: 425320548
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC122165.12