Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122163.2 + phase: 0 
         (428 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC229743                                                              298  3e-81
AW705311                                                              277  6e-75
TC232297                                                              234  7e-62
TC210527                                                              130  9e-31
TC209670                                                              118  6e-27
BG316062                                                               93  2e-19
TC222540 similar to GB|AAP31936.1|30387541|BT006592 At4g22290 {A...    93  2e-19
BU965258                                                               92  6e-19
TC231508                                                               65  4e-11
BG352658                                                               54  1e-07
TC205988 UP|PM1_SOYBN (Q01417) 18 kDa seed maturation protein, c...    37  0.017
TC207049 UP|Q01527 (Q01527) Maturation protein (Soybean seed mat...    36  0.038
TC217113 similar to UP|Q708X5 (Q708X5) Leucine rich repeat prote...    35  0.085
TC208731                                                               33  0.19
TC221470 similar to GB|AAR24741.1|38603996|BT010963 At2g34600 {A...    33  0.25
TC211099 similar to UP|NR41_HUMAN (P22736) Orphan nuclear recept...    32  0.72
TC211133 weakly similar to UP|Q9BKV7 (Q9BKV7) Ppg3, partial (4%)       30  1.6
TC206339 weakly similar to UP|Q9LVB8 (Q9LVB8) HSR203J protein-li...    30  1.6
AW156741 similar to GP|14597792|em c_pp004075307r {Physcomitrell...    30  2.1
TC233356 similar to PIR|A86166|A86166 protein F21B7.6 [imported]...    30  2.1

>TC229743 
          Length = 962

 Score =  298 bits (763), Expect = 3e-81
 Identities = 133/220 (60%), Positives = 175/220 (79%)
 Frame = +2

Query: 209 NCVLGRKGLLGFVKRYPDAELRGAIDGQYVKVTGVVTCGSIPLESSYQRIPRCVYVSSEL 268
           N   GR+ ++GFV  YPD+ELR A +GQ+VKV+GVVTCG++PLESS+Q++PRCVY S+ L
Sbjct: 2   NTYWGRRSIMGFVAHYPDSELRTAKNGQFVKVSGVVTCGNVPLESSFQKVPRCVYTSTSL 181

Query: 269 YEYKGWGGKSAHPKHRCFTWGSRYSEKYIADFYISDFQTGLRALVKAGYGNKVAPFVKPT 328
           YEY+GW  K+A+P HR  TWG R  E+ + DFYISDFQ+GLRALVK G+G +V P+V  +
Sbjct: 182 YEYRGWNSKAANPTHRRLTWGLRLLERRVVDFYISDFQSGLRALVKTGHGARVTPYVDDS 361

Query: 329 TVVDVTKENRELSPNFLGWLADRKLSTDDRIMRLKEGHIKEGSTVSVMGVVRRHENVLMI 388
            +++V     ELSP FL WL +R LS+DDRIMRL+EG+IKEGSTVSVMGVV+R+ENVLMI
Sbjct: 362 VLINVNPTKEELSPEFLRWLGERNLSSDDRIMRLEEGYIKEGSTVSVMGVVQRNENVLMI 541

Query: 389 VPPTEPVSTGCQWMRCLLPTGVEGLIITCEDNQNADVIAV 428
           VPP +P++TGCQW +C+ P+ +EG+++ CED    DVI V
Sbjct: 542 VPPPDPITTGCQWTKCIFPSSLEGIVLRCEDASKNDVIPV 661


>AW705311 
          Length = 444

 Score =  277 bits (709), Expect = 6e-75
 Identities = 130/147 (88%), Positives = 141/147 (95%)
 Frame = +3

Query: 196 GGVIVPVLVLIIWNCVLGRKGLLGFVKRYPDAELRGAIDGQYVKVTGVVTCGSIPLESSY 255
           G VIVPV+VLI WNCV GR+GLLGFVKRYPDAELRGAIDGQYVKVTGVVTCGSIPLESSY
Sbjct: 3   GAVIVPVVVLIAWNCVWGRRGLLGFVKRYPDAELRGAIDGQYVKVTGVVTCGSIPLESSY 182

Query: 256 QRIPRCVYVSSELYEYKGWGGKSAHPKHRCFTWGSRYSEKYIADFYISDFQTGLRALVKA 315
           QR+PRCVYVS+ELYEYKG GGKSA+ KHRCFTWGSRYSEKY+ADFY+SDFQ+GLRALVKA
Sbjct: 183 QRVPRCVYVSTELYEYKGLGGKSANSKHRCFTWGSRYSEKYVADFYVSDFQSGLRALVKA 362

Query: 316 GYGNKVAPFVKPTTVVDVTKENRELSP 342
           GYG KVAPFV+PTTVVD+TK+NRELSP
Sbjct: 363 GYGAKVAPFVEPTTVVDITKDNRELSP 443


>TC232297 
          Length = 637

 Score =  234 bits (596), Expect = 7e-62
 Identities = 103/164 (62%), Positives = 134/164 (80%)
 Frame = +1

Query: 265 SSELYEYKGWGGKSAHPKHRCFTWGSRYSEKYIADFYISDFQTGLRALVKAGYGNKVAPF 324
           S+ LYEY+GW  K+A+PKHR FTWG R +E+++ DFYISDFQ+GLRALVK GYG +V P+
Sbjct: 4   STSLYEYRGWDSKAANPKHRRFTWGLRAAERHVVDFYISDFQSGLRALVKTGYGARVTPY 183

Query: 325 VKPTTVVDVTKENRELSPNFLGWLADRKLSTDDRIMRLKEGHIKEGSTVSVMGVVRRHEN 384
           V  + V+DV   N+++SP FL WL +RKLS+DDRIM+LKEG+IKEGSTVSVMGVV+R++N
Sbjct: 184 VDDSIVIDVNPANKDMSPEFLRWLGERKLSSDDRIMQLKEGYIKEGSTVSVMGVVQRNDN 363

Query: 385 VLMIVPPTEPVSTGCQWMRCLLPTGVEGLIITCEDNQNADVIAV 428
           VLMIVPP EP++TGCQW +C+ P  +EG+++ CED    DVI V
Sbjct: 364 VLMIVPPPEPLTTGCQWAKCIFPASLEGIVLRCEDTSKIDVIPV 495


>TC210527 
          Length = 844

 Score =  130 bits (328), Expect = 9e-31
 Identities = 96/237 (40%), Positives = 123/237 (51%), Gaps = 51/237 (21%)
 Frame = +1

Query: 1   MGTRIPSHQLSSGLYVSGRPEQPKERQPPTMASRSVPYTGGDPKKSGELGKMLDIPVLDP 60
           MG+R PSHQLS+GLYVSGRPEQPKER  PTM S ++PYTGGD KKSGELGKM DIP+   
Sbjct: 148 MGSRFPSHQLSNGLYVSGRPEQPKER-TPTMTSVAMPYTGGDIKKSGELGKMFDIPMDAS 324

Query: 61  KSHPSSSSSQLSTGPARS-------------RPNSGQVGKNITGSG----TLSRKSTGSG 103
           KS     S QL+  P+R+              PN+       T SG    +LS K T SG
Sbjct: 325 KSR---KSGQLNNAPSRTGSFAAAASHSGPILPNTAPRSIYTTSSGGMAASLSMKKTNSG 495

Query: 104 PI----------------------------ALQPTGLITSGPVGSGPVGASRR-SGQLEQ 134
           P+                             L  TGLITSGP+ S   GA R+ SG LE 
Sbjct: 496 PLNKHGEPVKKSSGPQSGGVTRQNSGPIPHVLPTTGLITSGPLNSS--GAPRKVSGPLEF 669

Query: 135 SGSM---GKAVYGSAVTSLGEEVKVGFR--VSRSVVWVFMVVVAMCLLVGVFLMVAV 186
           SGSM       +  A+T+L  + +  FR    + ++W  +++  M  + G F++ AV
Sbjct: 670 SGSMKSHTSVTHNPAMTTLSLDDEYSFRRNFPKPILWSVILIFVMGFIAGAFILGAV 840


>TC209670 
          Length = 827

 Score =  118 bits (295), Expect = 6e-27
 Identities = 84/210 (40%), Positives = 112/210 (53%), Gaps = 51/210 (24%)
 Frame = +2

Query: 1   MGTRIPSHQLSSGLYVSGRPEQPKERQPPTMASRSVPYTGGDPKKSGELGKMLDIPVLDP 60
           MG+R PSHQLS+GLYVSGRPEQPKE+  PTM+S ++PYTGGD K+SGELGKM DIP+   
Sbjct: 182 MGSRFPSHQLSNGLYVSGRPEQPKEK-TPTMSSVAMPYTGGDIKRSGELGKMFDIPMDGS 358

Query: 61  KSHPSS--------------------------------------SSSQLSTGPARSRPNS 82
           KS  S                                       S+  +S   +  + NS
Sbjct: 359 KSRKSGPINNAPSRTGSFAGAASHSGPIMQNAAARSVYITSGNVSAGGMSASASMKKTNS 538

Query: 83  GQVGKN------ITG--SGTLSRKSTGSGPIALQPTGLITSGPVGSGPVGASRR-SGQLE 133
           G + K+       +G  SG ++R+++G  P  L  TGLITSGP+ S   GA R+ SGQL+
Sbjct: 539 GPLNKHGEPVKKSSGPQSGGVTRQNSGPIPPVLPTTGLITSGPLNSS--GAPRKVSGQLD 712

Query: 134 QSGSMGK----AVYGSAVTSLGEEVKVGFR 159
            +GSM        +  AVT+L  + +  FR
Sbjct: 713 STGSMKSLSSFVAHNPAVTTLSLDDEYSFR 802


>BG316062 
          Length = 324

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 45/57 (78%), Positives = 51/57 (88%)
 Frame = +2

Query: 1   MGTRIPSHQLSSGLYVSGRPEQPKERQPPTMASRSVPYTGGDPKKSGELGKMLDIPV 57
           MG+R PSHQLS+GLYVSGRPEQPKER  PTM+S ++PYTGGD KKSGELGKM DIP+
Sbjct: 140 MGSRFPSHQLSNGLYVSGRPEQPKER-TPTMSSVAMPYTGGDIKKSGELGKMFDIPM 307


>TC222540 similar to GB|AAP31936.1|30387541|BT006592 At4g22290 {Arabidopsis
           thaliana;} , partial (12%)
          Length = 600

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 43/55 (78%), Positives = 49/55 (88%)
 Frame = +3

Query: 374 SVMGVVRRHENVLMIVPPTEPVSTGCQWMRCLLPTGVEGLIITCEDNQNADVIAV 428
           SVMGVV+RH+NVLMIV   EPVSTGCQW+RCLLPT VEG I+TC+D+QNADVI V
Sbjct: 3   SVMGVVQRHDNVLMIVXAAEPVSTGCQWIRCLLPTYVEGXILTCDDSQNADVIPV 167


>BU965258 
          Length = 449

 Score = 91.7 bits (226), Expect = 6e-19
 Identities = 45/55 (81%), Positives = 49/55 (88%)
 Frame = +1

Query: 1   MGTRIPSHQLSSGLYVSGRPEQPKERQPPTMASRSVPYTGGDPKKSGELGKMLDI 55
           MG+RIPSH+LS+GLYVSGRPEQPKER  PTM S +VPYTGGD KKSGELGKM DI
Sbjct: 286 MGSRIPSHKLSNGLYVSGRPEQPKER-TPTMTSTAVPYTGGDIKKSGELGKMFDI 447


>TC231508 
          Length = 433

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 26/44 (59%), Positives = 33/44 (74%)
 Frame = +3

Query: 385 VLMIVPPTEPVSTGCQWMRCLLPTGVEGLIITCEDNQNADVIAV 428
           VLMIVPP EP++TGCQW +C+ P  +EG+I+ CED    DVI V
Sbjct: 54  VLMIVPPPEPLTTGCQWAKCIFPASLEGIILRCEDTSKIDVIPV 185


>BG352658 
          Length = 145

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 26/38 (68%), Positives = 31/38 (81%)
 Frame = +2

Query: 4  RIPSHQLSSGLYVSGRPEQPKERQPPTMASRSVPYTGG 41
          R PSHQLS+GLYVS  PEQ KE + PTM+S ++PYTGG
Sbjct: 5  RFPSHQLSNGLYVSSPPEQAKE-ETPTMSSVAMPYTGG 115


>TC205988 UP|PM1_SOYBN (Q01417) 18 kDa seed maturation protein, complete
          Length = 846

 Score = 37.0 bits (84), Expect = 0.017
 Identities = 32/124 (25%), Positives = 51/124 (40%), Gaps = 18/124 (14%)
 Frame = +1

Query: 25  ERQPPTMASRSVPYTGGDPKKSGELGKMLDIPVLDPKSHPSSSSSQLSTGPARSRPNSGQ 84
           E+   T+  ++   T  DP +  EL        ++       ++ Q +T   +S   +G 
Sbjct: 151 EKTKATVQEKAERMTARDPVQK-ELATQKKEAKMNQAELDKQAARQHNTAAKQSATTAGH 327

Query: 85  VGKNI----TGSGTLSRKSTGS--------------GPIALQPTGLITSGPVGSGPVGAS 126
           +G       TG+GT +  +TG               G    QPTG +T G VGS P+G +
Sbjct: 328 MGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAMPGHGTGQPTGHVTEGVVGSHPIGTN 507

Query: 127 RRSG 130
           R  G
Sbjct: 508 RGPG 519


>TC207049 UP|Q01527 (Q01527) Maturation protein (Soybean seed maturation
           polypeptides), complete
          Length = 759

 Score = 35.8 bits (81), Expect = 0.038
 Identities = 28/106 (26%), Positives = 47/106 (43%)
 Frame = +1

Query: 25  ERQPPTMASRSVPYTGGDPKKSGELGKMLDIPVLDPKSHPSSSSSQLSTGPARSRPNSGQ 84
           E+   T+  ++   T  DP +  EL        +        ++ Q +T  A+    +G 
Sbjct: 124 EKTKATVQEKAERMTARDPMQK-ELATQKKEAKMSQAELDKQAARQHNTA-AKQAATAGH 297

Query: 85  VGKNITGSGTLSRKSTGSGPIALQPTGLITSGPVGSGPVGASRRSG 130
           +G+ +    T +    G+G    QPTG +T G VGS P+G +R  G
Sbjct: 298 MGQPMGTHQTSAMPGHGTG----QPTGHVTEGVVGSHPIGTNRGPG 423


>TC217113 similar to UP|Q708X5 (Q708X5) Leucine rich repeat protein
           precursor, partial (96%)
          Length = 1553

 Score = 34.7 bits (78), Expect = 0.085
 Identities = 26/76 (34%), Positives = 35/76 (45%), Gaps = 9/76 (11%)
 Frame = +1

Query: 17  SGRPEQPKERQP------PTMASRSVPYTGGDPKKSGELGKMLD--IPVLDPKSHPSSSS 68
           +G P+ P  R+P      P  + R    +   P  S  +GK L    P   P+  PS+SS
Sbjct: 232 AGSPKTPSSRKPVAPAT*PENSQRRSAASTPSPPSSSLIGKTLPGRSPPASPRFPPSASS 411

Query: 69  SQLSTG-PARSRPNSG 83
           +   T  PARSRP  G
Sbjct: 412 TS*GTSSPARSRPTWG 459


>TC208731 
          Length = 1075

 Score = 33.5 bits (75), Expect = 0.19
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +1

Query: 43  PKKSGELGKMLDI----PVLDPKSHPSSSSSQLSTGPARSRPNSGQVGKNITGSGTLSRK 98
           P K G  G +L +    P+  PKS  SS S   S  P +S P      K I  +GTL  +
Sbjct: 274 PVKKGVKGSVLHLQIHKPIKKPKSPESSRSPSASNSPPKSSPVLVSTRKRIVTNGTLEER 453


>TC221470 similar to GB|AAR24741.1|38603996|BT010963 At2g34600 {Arabidopsis
           thaliana;} , partial (24%)
          Length = 754

 Score = 33.1 bits (74), Expect = 0.25
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 403 RCLLPTGVEGLIITCEDNQNADVIAV 428
           +C+ P  +EG+++ CED    DVI V
Sbjct: 482 KCIFPASLEGIVLRCEDTSKIDVIPV 559


>TC211099 similar to UP|NR41_HUMAN (P22736) Orphan nuclear receptor NR4A1
           (Orphan nuclear receptor HMR) (Early response protein
           NAK1) (TR3 orphan receptor), partial (4%)
          Length = 898

 Score = 31.6 bits (70), Expect = 0.72
 Identities = 29/107 (27%), Positives = 38/107 (35%)
 Frame = +1

Query: 33  SRSVPYTGGDPKKSGELGKMLDIPVLDPKSHPSSSSSQLSTGPARSRPNSGQVGKNITGS 92
           S+  P  G  P  S E           P +  SSS+SQ +  PA    ++     +   +
Sbjct: 313 SKPTPSRGSTPPPSSEHASTSSAATTLPGTTSSSSASQRTFSPATPPASASPSTPSAPSA 492

Query: 93  GTLSRKSTGSGPIALQPTGLITSGPVGSGPVGASRRSGQLEQSGSMG 139
            TLS     S      PT      P    P  A  RSG   + GS G
Sbjct: 493 TTLSAPCASSSATCSPPT------PTTPRPASAPSRSG-ARRGGSTG 612


>TC211133 weakly similar to UP|Q9BKV7 (Q9BKV7) Ppg3, partial (4%)
          Length = 709

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 15/109 (13%)
 Frame = +1

Query: 28  PPTMASRSVPYTGGDPKKSGELGKMLDIPVLDPKSHPSSSSSQLSTGPARSRPNSGQVGK 87
           PPT A+ S P     P            P   P S PSSSSS   + P+ + P+      
Sbjct: 184 PPTSATSSTPSPSSSP------------PSPSPTSSPSSSSSPSPSPPSSAAPDPAAASA 327

Query: 88  --------------NITGSGTLSRKSTGS-GPIALQPTGLITSGPVGSG 121
                           + S     KS  S G  AL+PT + T+    SG
Sbjct: 328 RDARASRRPWSSICRFSASAPPPPKSISSPGRAALRPTPITTASGPSSG 474


>TC206339 weakly similar to UP|Q9LVB8 (Q9LVB8) HSR203J protein-like protein,
           partial (43%)
          Length = 1255

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
 Frame = -2

Query: 63  HPSSSSSQLSTGPARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLI-TSGPVGSG 121
           HPSSS S  +T P  S  N+    ++ITGS      +T      L P+ LI    P    
Sbjct: 936 HPSSSKSLTTTTPFSSNNNTKSFSRSITGSPPFPLTNT------LHPSSLIFPIFPTHFS 775

Query: 122 PVGASRRSGQLEQSGSMGKAVYGSAVTSLGEEVKVGFRVSRSVVWV 167
            +G      +   +GS     +  +VT  G         S  ++WV
Sbjct: 774 ALGLQYS*SRSTPTGSASS--HNKSVTHSGRTSSFSSLTSDLLLWV 643


>AW156741 similar to GP|14597792|em c_pp004075307r {Physcomitrella patens},
           partial (34%)
          Length = 411

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 20/63 (31%), Positives = 28/63 (43%), Gaps = 2/63 (3%)
 Frame = +1

Query: 60  PKSHPSSSSSQLSTGPARSRPNSGQV-GKNITGSGTLSRKSTG-SGPIALQPTGLITSGP 117
           P   P SSSS LST P    P +  +  +    S T+S  ST    P+ + P   +   P
Sbjct: 145 PPVRPRSSSSTLSTTPVPVSPTTTSLPPRAALASSTVSSTSTARPSPLTVSPVSTVALSP 324

Query: 118 VGS 120
           + S
Sbjct: 325 LSS 333


>TC233356 similar to PIR|A86166|A86166 protein F21B7.6 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;} , partial
           (51%)
          Length = 659

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 24/86 (27%), Positives = 34/86 (38%), Gaps = 7/86 (8%)
 Frame = +2

Query: 3   TRIPSHQLSSGLYVSGR--PEQPKERQPPTMASRSVPYTGGDPKKSGELGKMLDIPVLDP 60
           T  P+  L S     GR  P  P     P+ +S         P+       + +  VL P
Sbjct: 182 TATPTRSLRSTSATPGRALPASPAASTTPSASS---------PRSPSSPSSLAEYTVLSP 334

Query: 61  KSHP-----SSSSSQLSTGPARSRPN 81
           K  P      SS+S  ++ PA+ RPN
Sbjct: 335 KRSPI*RTSGSSASTATSSPAKFRPN 412


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,147,974
Number of Sequences: 63676
Number of extensions: 267125
Number of successful extensions: 1771
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of query: 428
length of database: 12,639,632
effective HSP length: 100
effective length of query: 328
effective length of database: 6,272,032
effective search space: 2057226496
effective search space used: 2057226496
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)


Medicago: description of AC122163.2