BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122162.5 + phase: 1 /partial
(95 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC221248 weakly similar to GB|CAD40580.1|21741678|OSJN00141 oj00... 119 2e-28
TC223521 weakly similar to UP|Q84ZB9 (Q84ZB9) RNA recognition mo... 81 1e-16
TC208685 weakly similar to UP|Q84ZB9 (Q84ZB9) RNA recognition mo... 75 5e-15
AW596572 74 1e-14
TC229901 weakly similar to UP|GRP1_SORBI (Q99069) Glycine-rich R... 71 1e-13
AW597392 weakly similar to GP|7630030|emb| RNA binding protein-l... 70 2e-13
TC223147 weakly similar to UP|Q9LZT1 (Q9LZT1) RNA binding protei... 70 2e-13
TC208684 weakly similar to UP|Q84ZB9 (Q84ZB9) RNA recognition mo... 70 2e-13
TC215891 similar to GB|AAM78058.1|21928059|AY125548 AT5g61030/ma... 64 2e-11
TC204085 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding ... 63 3e-11
TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding ... 62 4e-11
TC204105 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding ... 62 5e-11
TC210743 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1,... 61 1e-10
TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, co... 59 4e-10
TC204083 similar to UP|O48567 (O48567) Glycine-rich RNA-binding ... 59 5e-10
TC217707 similar to UP|Q941H8 (Q941H8) RNA-binding protein precu... 57 1e-09
BG363508 57 2e-09
CD393416 weakly similar to GP|15822703|gb| RNA-binding protein p... 57 2e-09
TC225641 similar to GB|AAA18379.1|475719|ATU08467 RNA-binding pr... 56 3e-09
TC204093 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprot... 56 3e-09
>TC221248 weakly similar to GB|CAD40580.1|21741678|OSJN00141 oj000126_13.2
{Oryza sativa (japonica cultivar-group);} , partial
(40%)
Length = 861
Score = 119 bits (298), Expect = 2e-28
Identities = 58/74 (78%), Positives = 68/74 (91%)
Frame = +1
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
LAFSTTEE+LA+AFSQYG+V+KA+I+LNKAK R KGFGYVTFA+EEEA KAQI MNGKIL
Sbjct: 403 LAFSTTEEELAKAFSQYGSVLKANIILNKAKNRSKGFGYVTFAKEEEACKAQIDMNGKIL 582
Query: 61 HGRVLYVDMDPPNE 74
HGRV+YVD+ PN+
Sbjct: 583 HGRVIYVDVQLPNK 624
>TC223521 weakly similar to UP|Q84ZB9 (Q84ZB9) RNA recognition motif
(RRM)-containing protein-like, partial (57%)
Length = 651
Score = 80.9 bits (198), Expect = 1e-16
Identities = 39/73 (53%), Positives = 51/73 (69%)
Frame = +1
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L+F TTE L+EAFS YG V++A IV ++ R KGFG+VTFA ++EA A M GK L
Sbjct: 100 LSFYTTENALSEAFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASQDEAENAIEDMKGKTL 279
Query: 61 HGRVLYVDMDPPN 73
+GRV++VD PN
Sbjct: 280 NGRVIFVDYAKPN 318
>TC208685 weakly similar to UP|Q84ZB9 (Q84ZB9) RNA recognition motif
(RRM)-containing protein-like, partial (59%)
Length = 729
Score = 75.1 bits (183), Expect = 5e-15
Identities = 35/72 (48%), Positives = 50/72 (68%)
Frame = +1
Query: 5 TTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKILHGRV 64
TT+EKL EAFS +G +V+A +++++A R KGF +VT+ EEA KA+ GMN K L G V
Sbjct: 154 TTDEKLKEAFSSFGQLVEAKVIIDRASGRSKGFAFVTYTTIEEAEKAREGMNAKFLDGWV 333
Query: 65 LYVDMDPPNEQK 76
++VD P E +
Sbjct: 334 IFVDPAKPREPR 369
>AW596572
Length = 418
Score = 73.9 bits (180), Expect = 1e-14
Identities = 35/43 (81%), Positives = 41/43 (94%)
Frame = +3
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFA 43
LAFSTTEE+LA+AFSQYG+V+KA+I+LNKAK R KGFGYVTFA
Sbjct: 288 LAFSTTEEELAKAFSQYGSVLKANIILNKAKNRSKGFGYVTFA 416
>TC229901 weakly similar to UP|GRP1_SORBI (Q99069) Glycine-rich RNA-binding
protein 1 (Fragment), partial (28%)
Length = 673
Score = 70.9 bits (172), Expect = 1e-13
Identities = 33/81 (40%), Positives = 53/81 (64%)
Frame = +3
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L+F TTEE L AF +G +V+ +V+++ R +GF ++ +A EEE++KA GM+GK L
Sbjct: 288 LSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFL 467
Query: 61 HGRVLYVDMDPPNEQKNKIKQ 81
GRV++V++ P + KQ
Sbjct: 468 DGRVIFVEVAKPRSELAPRKQ 530
>AW597392 weakly similar to GP|7630030|emb| RNA binding protein-like
{Arabidopsis thaliana}, partial (78%)
Length = 392
Score = 70.1 bits (170), Expect = 2e-13
Identities = 36/75 (48%), Positives = 53/75 (70%)
Frame = +2
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L+F TT+E+L + FS +G V +AD+ L+ KR KGFG+V+F E EA KA MNG+I+
Sbjct: 98 LSFYTTQEQLKKLFSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKACKAMNGRIV 277
Query: 61 HGRVLYVDMDPPNEQ 75
+GR++ V +P NE+
Sbjct: 278 NGRLILV--EPANEK 316
>TC223147 weakly similar to UP|Q9LZT1 (Q9LZT1) RNA binding protein-like
(At3g46020), partial (73%)
Length = 622
Score = 70.1 bits (170), Expect = 2e-13
Identities = 36/75 (48%), Positives = 53/75 (70%)
Frame = +3
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L+F TT+E+L + FS +G V +AD+ L+ KR KGFG+V+F E EA KA MNG+I+
Sbjct: 144 LSFYTTQEQLKKLFSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKACKAMNGRIV 323
Query: 61 HGRVLYVDMDPPNEQ 75
+GR++ V +P NE+
Sbjct: 324 NGRLILV--EPANEK 362
>TC208684 weakly similar to UP|Q84ZB9 (Q84ZB9) RNA recognition motif
(RRM)-containing protein-like, partial (59%)
Length = 791
Score = 69.7 bits (169), Expect = 2e-13
Identities = 33/84 (39%), Positives = 53/84 (62%)
Frame = +3
Query: 5 TTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKILHGRV 64
T +E L EAFS +G +V+A ++ ++A R KGF +VT+ EEA +A+ GMN K L G V
Sbjct: 222 TKDENLKEAFSSFGQLVEAKVITDRASGRSKGFAFVTYTTIEEAERAREGMNAKFLDGWV 401
Query: 65 LYVDMDPPNEQKNKIKQATKNTEV 88
++VD P E + + ++ +E+
Sbjct: 402 IFVDPAKPREPRPPQQSQSQPSEI 473
>TC215891 similar to GB|AAM78058.1|21928059|AY125548 AT5g61030/maf19_30
{Arabidopsis thaliana;} , partial (41%)
Length = 782
Score = 63.5 bits (153), Expect = 2e-11
Identities = 29/68 (42%), Positives = 47/68 (68%)
Frame = +2
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
+++ST E+ L EAFS+YG VV A I++++ R +GFG++T+ EEA A ++G+ L
Sbjct: 194 VSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDL 373
Query: 61 HGRVLYVD 68
HGR + V+
Sbjct: 374 HGRPIRVN 397
>TC204085 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding protein,
partial (87%)
Length = 628
Score = 62.8 bits (151), Expect = 3e-11
Identities = 32/68 (47%), Positives = 47/68 (69%)
Frame = +3
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
LA++T L +AFSQYG+VV++ I+ ++ R +GFG+VTFA E+ R A GMNG+ L
Sbjct: 48 LAWATDNYDLEKAFSQYGDVVESKIINDRETGRSRGFGFVTFASEDSMRDAIEGMNGQNL 227
Query: 61 HGRVLYVD 68
GR + V+
Sbjct: 228 DGRNITVN 251
>TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein,
complete
Length = 748
Score = 62.4 bits (150), Expect = 4e-11
Identities = 30/68 (44%), Positives = 46/68 (67%)
Frame = +1
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
LA++T ++ L AFSQYG +V+ I+ ++ R +GFG+VTFA E+ + A GMNG+ L
Sbjct: 109 LAWATDDQALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIEGMNGQNL 288
Query: 61 HGRVLYVD 68
GR + V+
Sbjct: 289 DGRNITVN 312
>TC204105 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding protein,
partial (61%)
Length = 313
Score = 62.0 bits (149), Expect = 5e-11
Identities = 30/68 (44%), Positives = 46/68 (67%)
Frame = +1
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
LA++T + L +AFS YGN+V++ I+ ++ R +GFG+VTFA E + A GMNG+ L
Sbjct: 25 LAWATDDHALEKAFSHYGNIVESKIINDRETGRSRGFGFVTFASENSMKDAIEGMNGQNL 204
Query: 61 HGRVLYVD 68
GR + V+
Sbjct: 205DGRNITVN 228
>TC210743 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, partial
(53%)
Length = 452
Score = 60.8 bits (146), Expect = 1e-10
Identities = 28/74 (37%), Positives = 48/74 (64%)
Frame = +3
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
LA+ST++ KL + F ++G +++A +V++K R +GFG+VTF +++ +A MNG L
Sbjct: 102 LAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGMDL 281
Query: 61 HGRVLYVDMDPPNE 74
GR + VD P +
Sbjct: 282 DGRTITVDRAQPQQ 323
>TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, complete
Length = 1937
Score = 58.9 bits (141), Expect = 4e-10
Identities = 29/68 (42%), Positives = 44/68 (64%)
Frame = +2
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
LA++T + L AFSQYG +V+ I+ ++ R +GFG+VTFA E+ + A MNG+ L
Sbjct: 1262 LAWATDDHALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIGAMNGQNL 1441
Query: 61 HGRVLYVD 68
GR + V+
Sbjct: 1442 DGRNITVN 1465
Score = 56.6 bits (135), Expect = 2e-09
Identities = 30/72 (41%), Positives = 39/72 (53%)
Frame = -1
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L FS +LAE F GNV +++ +K R +GFG+VT + EEA A NG L
Sbjct: 860 LPFSVDSARLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAKQFNGYEL 681
Query: 61 HGRVLYVDMDPP 72
GR L V+ PP
Sbjct: 680 DGRSLRVNSGPP 645
Score = 41.6 bits (96), Expect = 7e-05
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = -1
Query: 1 LAFSTTEEKLAEAFSQYGN-VVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKI 59
LA+ + L F + G V++A ++ ++ R +GFG+VTF +E + A ++G
Sbjct: 542 LAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKSAIQSLDGVD 363
Query: 60 LHGRVLYVDM 69
L+GR + V +
Sbjct: 362 LNGRAIRVSL 333
>TC204083 similar to UP|O48567 (O48567) Glycine-rich RNA-binding protein,
partial (95%)
Length = 1019
Score = 58.5 bits (140), Expect = 5e-10
Identities = 28/68 (41%), Positives = 46/68 (67%)
Frame = +2
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
LA+ T + L +AFS YG++V++ ++ ++ R +GFG+VTFA E+ + A GMNG+ L
Sbjct: 80 LAWVTGNDALEKAFSIYGDIVESKVINDRETGRSRGFGFVTFASEQSMKDAIAGMNGQDL 259
Query: 61 HGRVLYVD 68
GR + V+
Sbjct: 260 DGRNITVN 283
>TC217707 similar to UP|Q941H8 (Q941H8) RNA-binding protein precursor,
partial (35%)
Length = 1008
Score = 57.4 bits (137), Expect = 1e-09
Identities = 25/68 (36%), Positives = 46/68 (66%)
Frame = +1
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
+++ST + L E+ ++YG V+ +++++ R +GFG++TFA E+A A GM+G+ L
Sbjct: 184 ISYSTDDMSLRESPARYGEVIDVKVIMDRETGRSRGFGFITFATSEDASYAIQGMDGQDL 363
Query: 61 HGRVLYVD 68
HGR + V+
Sbjct: 364 HGRRIRVN 387
>BG363508
Length = 433
Score = 56.6 bits (135), Expect = 2e-09
Identities = 28/68 (41%), Positives = 44/68 (64%)
Frame = +1
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L+ S + L EAFS +G+V + IV +K R +GFG+V F+ E++A+ A+ M+GK L
Sbjct: 106 LSCSVDHKSLKEAFSSFGDVTEVTIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKAL 285
Query: 61 HGRVLYVD 68
GR L ++
Sbjct: 286 LGRPLRIN 309
>CD393416 weakly similar to GP|15822703|gb| RNA-binding protein precursor
{Nicotiana tabacum}, partial (29%)
Length = 733
Score = 56.6 bits (135), Expect = 2e-09
Identities = 23/60 (38%), Positives = 42/60 (69%)
Frame = -2
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
+++ST + L E+F++YG V+ +++++ R +GFG+VTFA E+A A GM+G++L
Sbjct: 660 ISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAIQGMDGQVL 481
>TC225641 similar to GB|AAA18379.1|475719|ATU08467 RNA-binding protein 2
{Arabidopsis thaliana;} , partial (59%)
Length = 1223
Score = 56.2 bits (134), Expect = 3e-09
Identities = 31/72 (43%), Positives = 41/72 (56%)
Frame = +3
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L F EKLA F Q G V A+++ N+A R +GFG+VT + EE KA +G L
Sbjct: 447 LPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKMFSGYEL 626
Query: 61 HGRVLYVDMDPP 72
+GRVL V+ P
Sbjct: 627 NGRVLTVNKAAP 662
Score = 45.4 bits (106), Expect = 5e-06
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +3
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L + +L + FS++G V A +V ++ R +GFG+VT + E + A ++G+ L
Sbjct: 726 LPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSL 905
Query: 61 HGRVLYVDM 69
GR + V++
Sbjct: 906 DGRAIRVNV 932
>TC204093 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A,
chloroplast precursor (CP29A), partial (63%)
Length = 1403
Score = 55.8 bits (133), Expect = 3e-09
Identities = 29/72 (40%), Positives = 39/72 (53%)
Frame = +2
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
L F+ +LAE F GNV +++ +K R +GFG+VT + EEA A NG L
Sbjct: 350 LPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQFNGYEL 529
Query: 61 HGRVLYVDMDPP 72
GR L V+ PP
Sbjct: 530 DGRALRVNSGPP 565
Score = 49.3 bits (116), Expect = 3e-07
Identities = 23/69 (33%), Positives = 39/69 (56%)
Frame = +2
Query: 1 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 60
LA+ L F + GNV++A ++ ++ R +GFG+VTF+ +E A +NG L
Sbjct: 668 LAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNGVDL 847
Query: 61 HGRVLYVDM 69
+GR + V +
Sbjct: 848 NGRAIRVSL 874
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.312 0.130 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,817,232
Number of Sequences: 63676
Number of extensions: 24196
Number of successful extensions: 285
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of query: 95
length of database: 12,639,632
effective HSP length: 71
effective length of query: 24
effective length of database: 8,118,636
effective search space: 194847264
effective search space used: 194847264
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC122162.5