BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122160.3 - phase: 0 /pseudo
(835 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227570 weakly similar to UP|Q762A4 (Q762A4) BRI1-KD interactin... 159 4e-39
TC232114 similar to UP|Q8VZF5 (Q8VZF5) AT3g14400/MLN21_18, parti... 130 2e-30
TC216619 similar to UP|Q9FPS9 (Q9FPS9) Ubiquitin-specific protea... 129 4e-30
AI416787 similar to GP|11993486|gb| ubiquitin-specific protease ... 119 7e-27
TC222185 weakly similar to UP|Q9FKP5 (Q9FKP5) Similarity to ubiq... 79 6e-26
TC213502 110 3e-24
TC227569 weakly similar to UP|Q762A4 (Q762A4) BRI1-KD interactin... 98 2e-20
TC209728 weakly similar to UP|Q9FKP5 (Q9FKP5) Similarity to ubiq... 93 4e-19
TC230161 similar to UP|Q9C585 (Q9C585) Ubiquitin-specific protea... 86 5e-17
TC220582 similar to UP|Q9C585 (Q9C585) Ubiquitin-specific protea... 86 9e-17
TC208836 similar to UP|Q9ZSB5 (Q9ZSB5) F3H7.5 protein, partial (... 83 4e-16
TC207866 homologue to UP|O24454 (O24454) Ubiquitin-specific prot... 79 1e-14
TC219119 homologue to UP|Q9FG10 (Q9FG10) Ubiquitin carboxyl-term... 74 2e-13
TC206369 similar to UP|Q9FPS3 (Q9FPS3) Ubiquitin-specific protea... 74 2e-13
CO981469 67 2e-11
TC206368 similar to UP|Q8L7U2 (Q8L7U2) AT4g30890/F6I18_200, part... 65 9e-11
TC222922 similar to UP|Q9FPS9 (Q9FPS9) Ubiquitin-specific protea... 64 2e-10
BF069678 similar to GP|11993490|gb| ubiquitin-specific protease ... 61 2e-09
CA953465 weakly similar to GP|9759625|dbj| contains similarity t... 60 4e-09
BE059122 56 7e-08
>TC227570 weakly similar to UP|Q762A4 (Q762A4) BRI1-KD interacting protein
110 (Fragment), partial (9%)
Length = 1492
Score = 159 bits (403), Expect = 4e-39
Identities = 112/261 (42%), Positives = 141/261 (53%), Gaps = 37/261 (14%)
Frame = +1
Query: 612 SVIHCQKNSPAEVDAVAAQDSVTNLSEHAGLVGTSNAVVPQGLVLKVSSKRSLKDSSLDQ 671
S+IH + N A+ + + H LVG+ QGLVL S SL SL+Q
Sbjct: 85 SLIHPKVNHQLGTSAIGSVCEKASSMTHEDLVGS------QGLVLNKSVNTSLNTESLNQ 246
Query: 672 KQVKKSKKKFPKYKGSIMQLSLIRPSMRCLGPRKKNHKKNRRCLLGLKYHSKEKLKKNAI 731
K +KKSKKKF KY+ S M L I M LGPRKKNHK+ +R L +K +K+KL K A
Sbjct: 247 KPLKKSKKKFLKYQVSWMHLRPIFYYMAYLGPRKKNHKRIKRRTLSMKNPNKDKLDKLAF 426
Query: 732 SS-----DVGPSISRKEHLRS----------------SLMKHDAEREIINRMDQNCAVLA 770
SS DV P +S ++ SL++ AE E R+D +CAVLA
Sbjct: 427 SSEDAKPDVFPCLSSCSDSKATKAGYRPSANFKSSDESLIETRAEGEFRKRIDHSCAVLA 606
Query: 771 TATQVENMSRC-------------SLQDDKRDQMQNTVVTQ---GLEETVVARWDDVELP 814
+A Q+EN+S S QD RDQM N +++ G EETVVARWDD+ELP
Sbjct: 607 SAAQIENISGSGSVVSQFEARQADSAQDSTRDQMHNGLMSMPNGGPEETVVARWDDIELP 786
Query: 815 SSQALESKTDQIARIGYVGDE 835
SSQ LESK D+ IGYVGDE
Sbjct: 787 SSQHLESKNDKTVSIGYVGDE 849
>TC232114 similar to UP|Q8VZF5 (Q8VZF5) AT3g14400/MLN21_18, partial (26%)
Length = 659
Score = 130 bits (328), Expect = 2e-30
Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 1/206 (0%)
Frame = +2
Query: 237 SNKFDPFLDLSLEILKADSLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTIHKA 296
SNK D +D+SL++ ++SL+ ++ F E+LDG +K Y C CK+ V A KQ++I +A
Sbjct: 2 SNKVDEIMDISLDVFHSNSLKDSMQKFFQPEVLDGNKK-YKCDSCKKLVAAKKQMSILQA 178
Query: 297 PYVLAIHLKRFYAHDPNIKIKKKVRFDSALNLKPFV-SGSSDGDVKYSLYGVLVHSGFST 355
P +L I LKRF KI K V F+ L L F+ S D +Y L+G +VHSG+S
Sbjct: 179 PNILVIQLKRFEGILGG-KIDKAVAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGYSP 355
Query: 356 HSGHYYCYVRTSNNMWYTLDDTRVSHVGEQEVLNQQAYMLFYVRDKKSITPRKPVNIAKE 415
SGHYY Y++ + WY DD+ V+ QEVL+++ Y+LF+ R T ++PV
Sbjct: 356 ESGHYYAYIKDAMGRWYCCDDSCVTVATLQEVLSEKVYILFFSR-----TNQRPV----- 505
Query: 416 EISKTNVIGSRYPSTPTNALKDYPNG 441
S +N + S N +K + NG
Sbjct: 506 --SSSNSLAS-------NGVKPHSNG 556
>TC216619 similar to UP|Q9FPS9 (Q9FPS9) Ubiquitin-specific protease 15,
partial (23%)
Length = 1374
Score = 129 bits (325), Expect = 4e-30
Identities = 106/339 (31%), Positives = 155/339 (45%), Gaps = 13/339 (3%)
Frame = +1
Query: 237 SNKFDPFLDLSLEILK-ADSLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTIHK 295
S +++ +DL+LEIL +SL+ AL FT+ E LDG E Y C RC V+A KQL+IH+
Sbjct: 22 SERYENIMDLTLEILGWVESLEDALTQFTSPEDLDG-ENMYRCGRCTSYVRARKQLSIHE 198
Query: 296 APYVLAIHLKRFYAHDPNIKIKKKVRFDSALNLKPFVSGSSDGDVKYSLYGVLVHSGF-- 353
AP +L I LKRF KI K + F L++ PF++G+ D Y LY V+VH
Sbjct: 199 APNILTIVLKRFQEGRYG-KINKCITFPEMLDMIPFMTGTGDIPPLYMLYAVVVHLDTLN 375
Query: 354 STHSGHYYCYVRTSNNMWYTLDDTRVSHVGEQEVLNQQAYMLFYVRDKKSITPRKPVNIA 413
++ SGHY YV+ W+ +DD V V +V+++ AY+LFY+R PR PV
Sbjct: 376 ASFSGHYVSYVKDLQGNWFRIDDAEVQPVLINQVMSEGAYILFYMRS----CPRPPVEHT 543
Query: 414 KEEISKTNVIGSRYPSTPTNALKDYPNGHVENKFCGVPLTAETQKNLLNADPS-----RI 468
+ ++ S++ P K GH + + +PS I
Sbjct: 544 MNAMQQSVYDSSKH--NPMEMQKPNKPGH----------SRHGSRQFFVPEPSPNTRPEI 687
Query: 469 SDALIQQKNSGILAKSLMHNETPV----SERTSKELTQMNSSD-ELPVAKSELECLSSLD 523
+ +I N G L KS N PV +E +E + SSD L + E +
Sbjct: 688 TTHIIDTTN-GFLRKSTNRNALPVTQTYAENVRREFSDATSSDWSLFTSSDEASFTTEST 864
Query: 524 HSGKDNVSGNQKCLVAPAGDKPNLFTEDTLLKEGVDSPL 562
V C + P N +E + LK P+
Sbjct: 865 RDSFSTVDYGDSCNMDPISSIFNYPSEKSYLKFSHSRPV 981
>AI416787 similar to GP|11993486|gb| ubiquitin-specific protease 23
{Arabidopsis thaliana}, partial (2%)
Length = 386
Score = 119 bits (297), Expect = 7e-27
Identities = 68/125 (54%), Positives = 81/125 (64%), Gaps = 18/125 (14%)
Frame = +2
Query: 1 MAETLMVETE-----------TITKQHDPFQRKIEFIPVKKPFKGFSNDFNIETLNPTTS 49
MAET++++TE T T RKI F+PVKKPFKGFSN F++ETLNP++S
Sbjct: 47 MAETIVIQTEPPNPPDPSSSTTTTAAPPLLSRKIVFLPVKKPFKGFSNHFHVETLNPSSS 226
Query: 50 EHRQLVSANIQSSQPQPSKN-------SEFSEFGLDPELSLGITFRRIGAGLWNLGNTCF 102
S+P+PS + SEFSE+GLDPE S GITFRRIGAGL NLGNTCF
Sbjct: 227 ------------SEPRPSGSVAKKHDASEFSEYGLDPEFSFGITFRRIGAGLRNLGNTCF 370
Query: 103 LNSVL 107
LNSVL
Sbjct: 371 LNSVL 385
>TC222185 weakly similar to UP|Q9FKP5 (Q9FKP5) Similarity to ubiquitin
carboxyl-terminal hydrolase, partial (26%)
Length = 804
Score = 79.0 bits (193), Expect(2) = 6e-26
Identities = 46/109 (42%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Frame = +2
Query: 237 SNKFDPFLDLSLEIL-KADSLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTIHK 295
S + + +DL++EI + +L +AL FT+ E LDG E +YHC RCK +A K+LT+ +
Sbjct: 104 SERQERMMDLTVEIEGEITTLVEALRRFTSTETLDG-ENKYHCVRCKSYEKAKKKLTVSE 280
Query: 296 APYVLAIHLKRFYAHDPNIKIKKKVRFDSALNLKPFVSGSSDGDVKYSL 344
AP VL + LKRF + K+ K ++F LNL PF+SG+SD Y +
Sbjct: 281 APNVLTVALKRFQSGKFG-KLNKPIQFPEILNLAPFMSGTSDKSPIYQI 424
Score = 57.8 bits (138), Expect(2) = 6e-26
Identities = 40/113 (35%), Positives = 60/113 (52%), Gaps = 11/113 (9%)
Frame = +3
Query: 344 LYGVLVHSGF--STHSGHYYCYVRTSNNMWYTLDDTRVSHVGEQEVLNQQAYMLFYVRDK 401
LYGV+VH ++ SGHY CYV+ N W +DD+ V+ V VL + AY+LFY R
Sbjct: 423 LYGVVVHLDVMNASFSGHYVCYVKNIQNKWSKVDDSVVTAVELDRVLTKGAYILFYAR-- 596
Query: 402 KSITPRKPVNI--------AKEEIS-KTNVIGSRYPSTPTNALKDYPNGHVEN 445
+PR P I +K ++S KT +RY ST + + ++ N + +
Sbjct: 597 --CSPRAPRLIRNRILSPDSKSKVSGKTLTTKARYIST-NSGVSEHANSSISS 746
>TC213502
Length = 575
Score = 110 bits (275), Expect = 3e-24
Identities = 61/134 (45%), Positives = 80/134 (59%), Gaps = 2/134 (1%)
Frame = +1
Query: 268 LLDGGEKQYHCQRCKQKVQAVKQLTIHKAPYVLAIHLKRFYAHDPNIKIKKKVRFDSALN 327
LLDG E Y C+ CK V+A K+LT+ AP +L I LKRF + K+ K++ F LN
Sbjct: 1 LLDG-ENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFG-KLNKRIAFPETLN 174
Query: 328 LKPFVSGSSDGDVKYSLYGVLVHSGFSTHS--GHYYCYVRTSNNMWYTLDDTRVSHVGEQ 385
L P++S + DG Y LYGV+VH S GHY CY++ WY +DD +V V +
Sbjct: 175 LSPYMSEAGDGSDIYKLYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVE 354
Query: 386 EVLNQQAYMLFYVR 399
EVL+Q AYML Y R
Sbjct: 355 EVLSQGAYMLLYSR 396
>TC227569 weakly similar to UP|Q762A4 (Q762A4) BRI1-KD interacting protein
110 (Fragment), partial (9%)
Length = 939
Score = 97.8 bits (242), Expect = 2e-20
Identities = 54/104 (51%), Positives = 71/104 (67%), Gaps = 16/104 (15%)
Frame = +2
Query: 748 SLMKHDAEREIINRMDQNCAVLATATQVENMSRC-------------SLQDDKRDQMQN- 793
SL+++ AE E R+D +CAVLA+A Q+E +S S QD +RDQM N
Sbjct: 113 SLIENRAEGEFRKRIDHSCAVLASAAQIEIISGSGSIVSQFEARQADSAQDSRRDQMHNG 292
Query: 794 --TVVTQGLEETVVARWDDVELPSSQALESKTDQIARIGYVGDE 835
+++++GLEETVVARWDD+ELPSSQ LESK D++ IGYVGDE
Sbjct: 293 LMSMLSRGLEETVVARWDDIELPSSQHLESKNDKLVSIGYVGDE 424
>TC209728 weakly similar to UP|Q9FKP5 (Q9FKP5) Similarity to ubiquitin
carboxyl-terminal hydrolase, partial (17%)
Length = 1194
Score = 93.2 bits (230), Expect = 4e-19
Identities = 50/117 (42%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Frame = +1
Query: 287 AVKQLTIHKAPYVLAIHLKRFYAHDPNIKIKKKVRFDSALNLKPFVSGSSDGDVKYSLYG 346
A K+LT+ +AP +L I LKRF + + K+ K V+F LN+ P++SG+ D YSLY
Sbjct: 13 ARKKLTVLEAPNILTIVLKRFQSGNFE-KLNKSVQFPEVLNMAPYMSGTKDKSPLYSLYA 189
Query: 347 VLVHSGF----STHSGHYYCYVRTSNNMWYTLDDTRVSHVGEQEVLNQQAYMLFYVR 399
V+VH + SGHY CYV+ W+ DD+RV V VL+++AYML Y R
Sbjct: 190 VVVHLDLDIMNAAFSGHYVCYVKNIQGEWFRTDDSRVEPVELSRVLSERAYMLLYAR 360
>TC230161 similar to UP|Q9C585 (Q9C585) Ubiquitin-specific protease-like
protein, partial (18%)
Length = 1067
Score = 86.3 bits (212), Expect = 5e-17
Identities = 53/148 (35%), Positives = 80/148 (53%), Gaps = 2/148 (1%)
Frame = +3
Query: 255 SLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTIHKAPYVLAIHLKRF-YAHDPN 313
SL K L F E L G E ++C CK+ QA K+L + + P +L IHLKRF Y+
Sbjct: 150 SLYKCLEAFLQEEPL-GPEDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYLK 326
Query: 314 IKIKKKVRFD-SALNLKPFVSGSSDGDVKYSLYGVLVHSGFSTHSGHYYCYVRTSNNMWY 372
K++ V F L+L +++ +D Y+LY V H G S GHY +V + WY
Sbjct: 327 NKLETYVDFPVDNLDLSAYITYGNDESYHYTLYAVSNHYG-SMGGGHYTAFVHRGGDQWY 503
Query: 373 TLDDTRVSHVGEQEVLNQQAYMLFYVRD 400
DD+ V + ++++ + AY+LFY R+
Sbjct: 504 DFDDSHVYPIIKEKIKSSAAYVLFYRRN 587
>TC220582 similar to UP|Q9C585 (Q9C585) Ubiquitin-specific protease-like
protein, partial (16%)
Length = 1009
Score = 85.5 bits (210), Expect = 9e-17
Identities = 53/146 (36%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Frame = +3
Query: 255 SLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTIHKAPYVLAIHLKRF-YAHDPN 313
S+ K L F E L G E ++C CK+ QA K+L + + P +L +HLKRF Y+
Sbjct: 36 SIYKCLEAFLKEEPL-GPEDMWYCPNCKKPQQAYKKLDLWRLPEILVVHLKRFSYSRYFK 212
Query: 314 IKIKKKVRFD-SALNLKPFVS-GSSDGDVKYSLYGVLVHSGFSTHSGHYYCYVRTSNNMW 371
K++ V F + L+L +V+ G++ +Y LY + H G GHY +VR + W
Sbjct: 213 NKLETFVDFQINDLDLSTYVAHGNNQSSNRYVLYAISCHYG-GLGGGHYTAFVRYGYDKW 389
Query: 372 YTLDDTRVSHVGEQEVLNQQAYMLFY 397
Y DD+RV V E + AY+LFY
Sbjct: 390 YDFDDSRVESVSEDMIKTPAAYVLFY 467
>TC208836 similar to UP|Q9ZSB5 (Q9ZSB5) F3H7.5 protein, partial (17%)
Length = 1117
Score = 83.2 bits (204), Expect = 4e-16
Identities = 55/153 (35%), Positives = 76/153 (48%), Gaps = 3/153 (1%)
Frame = +1
Query: 252 KADSLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTIHKAPYVLAIHLKRF-YAH 310
+A SL L F E L G + ++C RCK+ QA K+L + K P +L HLKRF Y+
Sbjct: 115 EAISLFSCLEAFLTEEPL-GPDDMWYCPRCKEHRQATKKLDLWKLPEILVFHLKRFSYSR 291
Query: 311 DPNIKIKKKVRFD-SALNLKPFVSGSSDGDVKYSLYGVLVHSGFSTHSGHYYCYVR-TSN 368
K+ V F L+L +V Y LY + H G GHY Y +
Sbjct: 292 YLKNKLDTFVNFPIHNLDLTKYVKSKDGPSYVYDLYAISNHYG-GLGGGHYTAYCKLIDE 468
Query: 369 NMWYTLDDTRVSHVGEQEVLNQQAYMLFYVRDK 401
N W+ DD+ VS V E E+ + AY+LFY R++
Sbjct: 469 NKWFHFDDSHVSSVTEAEIKSSAAYVLFYQRNR 567
>TC207866 homologue to UP|O24454 (O24454) Ubiquitin-specific protease
(AtUBP3) (AT4g39910/T5J17_80) , partial (43%)
Length = 784
Score = 78.6 bits (192), Expect = 1e-14
Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Frame = +3
Query: 255 SLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTIHKAPYVLAIHLKRFYAHDPNI 314
S+ L NF++ E L+ +K + C +C +A K++ I K P++L IHLKRF +
Sbjct: 15 SITSCLKNFSSTETLNAEDKLF-CDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLG 191
Query: 315 KIKK---KVRFDSALNLKPFVSGSSDGDVKYSLYGVLVHSGFSTHSGHYYCYVRTSNNMW 371
+ KK +V F L L V D D++YSL+ V+VH G + GHY V+ S+N W
Sbjct: 192 RYKKLSYRVVFPLELKLSNTVE---DADIEYSLFAVVVHVGSGPNHGHYVSLVK-SHNHW 359
Query: 372 YTLDDTRVSHVGEQEV 387
DD V + E V
Sbjct: 360 LFFDDENVEMIDESAV 407
>TC219119 homologue to UP|Q9FG10 (Q9FG10) Ubiquitin carboxyl-terminal
hydrolase, partial (25%)
Length = 836
Score = 74.3 bits (181), Expect = 2e-13
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 10/165 (6%)
Frame = +2
Query: 237 SNKFDPFLDLSLEILKADSLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTIHKA 296
S + + F DL L++ + + + E L+G K YH ++ + A K +
Sbjct: 149 STRKESFYDLQLDVKGCPDVYASFDKYVEVERLEGDNK-YHAEQYGLQ-DAKKGVLFIDF 322
Query: 297 PYVLAIHLKRF---YAHDPNIKIKKKVRFDSALNLK----PFVSGSSDGDVK--YSLYGV 347
P VL + LKRF + D +KI + F L+L ++S +D +V+ Y+L+ V
Sbjct: 323 PPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRNVRNLYTLHSV 502
Query: 348 LVHSGFSTHSGHYYCYVR-TSNNMWYTLDDTRVSHVGEQEVLNQQ 391
LVHSG H GHYY ++R T + WY DD RV+ + L +Q
Sbjct: 503 LVHSG-GVHGGHYYAFIRPTLSEQWYKFDDERVTKEDTKRALEEQ 634
>TC206369 similar to UP|Q9FPS3 (Q9FPS3) Ubiquitin-specific protease 24,
partial (47%)
Length = 1305
Score = 74.3 bits (181), Expect = 2e-13
Identities = 55/167 (32%), Positives = 78/167 (45%), Gaps = 5/167 (2%)
Frame = +1
Query: 236 ASNKFDPFLDLSLEILK--ADSLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTI 293
AS P+L L L+I +++ AL F+A E L+G + V A K + I
Sbjct: 436 ASATVQPYLLLHLDIYPDAVHTIEDALHLFSAPETLEGYRTSLTAKA--GVVTARKSVQI 609
Query: 294 HKAPYVLAIHLKRF-YAHDPNIKIKKKVRF--DSALNLKPFVSGSSDGDVKYSLYGVLVH 350
P ++ +HL RF Y + K+ K V F + L VS S++G KY L + H
Sbjct: 610 VTLPKIMILHLMRFGYGSQGSTKLHKPVHFPLELVLGRDLLVSPSTEGR-KYELVATITH 786
Query: 351 SGFSTHSGHYYCYVRTSNNMWYTLDDTRVSHVGEQEVLNQQAYMLFY 397
G GHY + N W DD V +G +VL+ QAY+LFY
Sbjct: 787 HGMEPSKGHYTADAQYPNGRWLRFDDQSVFAIGTNKVLHDQAYVLFY 927
>CO981469
Length = 310
Score = 67.4 bits (163), Expect = 2e-11
Identities = 34/76 (44%), Positives = 46/76 (59%), Gaps = 2/76 (2%)
Frame = -1
Query: 326 LNLKPFVSGSSDGDVKYSLYGVLVHSGFSTHS--GHYYCYVRTSNNMWYTLDDTRVSHVG 383
L+L P++S + DG Y LY V+VH S GHY C+++ WY +DD +VS V
Sbjct: 310 LDLSPYMSEAGDGSDIYKLYAVVVHIDMLNASFFGHYICFIKDLCGNWYRIDDWKVSSVE 131
Query: 384 EQEVLNQQAYMLFYVR 399
+EVL+Q AYML Y R
Sbjct: 130 LEEVLSQGAYMLLYSR 83
>TC206368 similar to UP|Q8L7U2 (Q8L7U2) AT4g30890/F6I18_200, partial (42%)
Length = 711
Score = 65.5 bits (158), Expect = 9e-11
Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Frame = +3
Query: 287 AVKQLTIHKAPYVLAIHLKRF-YAHDPNIKIKKKVRF--DSALNLKPFVSGSSDGDVKYS 343
A K + I P ++ +HL RF Y + K+ K V F + L + VS S++G KY
Sbjct: 6 ARKSVRIVTLPKIMILHLMRFGYGSQGSTKLHKPVHFPLELVLGRELLVSPSTEGR-KYE 182
Query: 344 LYGVLVHSGFSTHSGHYYCYVRTSNNMWYTLDDTRVSHVGEQEVLNQQAYMLFY 397
L + H G GHY + N W DD V +G +VL+ QAY+LFY
Sbjct: 183 LVATITHHGTEPSKGHYTADAQYPNGRWLRFDDQSVFAIGTNKVLHDQAYVLFY 344
>TC222922 similar to UP|Q9FPS9 (Q9FPS9) Ubiquitin-specific protease 15,
partial (17%)
Length = 502
Score = 64.3 bits (155), Expect = 2e-10
Identities = 31/83 (37%), Positives = 48/83 (57%)
Frame = +2
Query: 93 GLWNLGNTCFLNSVLQCLTYTEPLAAYLQSGKHKSSCHIAGFCALCAIQNHVSCALQATG 152
GL N GN+C+ N+VLQCLT T+PL YL H +C +C +C ++ H+ L+ G
Sbjct: 110 GLLNCGNSCYANAVLQCLTSTKPLVVYLLYRSHSKACCAKDWCLMCELEKHI-MVLRENG 286
Query: 153 RIVSPQDMVGNLRCILMSCFFNE 175
+SP ++ ++R I +C E
Sbjct: 287 DPLSPSRILWHMRSI--NCHMGE 349
>BF069678 similar to GP|11993490|gb| ubiquitin-specific protease 25
{Arabidopsis thaliana}, partial (8%)
Length = 406
Score = 61.2 bits (147), Expect = 2e-09
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +3
Query: 65 QPSKNSEFSEFGLDPELSLGITFRRIGAGLWNLGNTCFLNSVLQCLTYTEPLAAYLQSGK 124
QPS S+ + G P L GL NLGN+C+LNSVLQCLTYT PLA + +
Sbjct: 144 QPSLLSQKRKTGTGPPL-----------GLRNLGNSCYLNSVLQCLTYTPPLANFCLRLQ 290
Query: 125 HKSSCHIAG-FCALCAIQNHVSCALQ 149
H S C +G C C ++ ++ +L+
Sbjct: 291 HSSLCDSSGSSCPFCILEKQIARSLR 368
>CA953465 weakly similar to GP|9759625|dbj| contains similarity to ubiquitin
carboxyl-terminal hydrolase~gene_id:MNA5.19 {Arabidopsis
thaliana}, partial (9%)
Length = 401
Score = 60.1 bits (144), Expect = 4e-09
Identities = 41/111 (36%), Positives = 54/111 (47%), Gaps = 11/111 (9%)
Frame = +2
Query: 342 YSLYGVLVHSGF--STHSGHYYCYVRTSNNMWYTLDDTRVSHVGEQEVLNQQAYMLFYVR 399
Y LYGV+VH + SGHY CYV+ + W+ +DD+ V+ V + VL + AYMLFY R
Sbjct: 29 YRLYGVVVHLDIMNAAFSGHYVCYVKNFQSRWFKVDDSVVTAVELESVLAKGAYMLFYSR 208
Query: 400 DKKSITPRKPVNIAKEEIS---------KTNVIGSRYPSTPTNALKDYPNG 441
+PR P I +S KT + SR ST P G
Sbjct: 209 ----CSPRAPRLIRNSIVSSDSKWKLNGKTATMKSRRLSTGAGVNLTSPGG 349
>BE059122
Length = 387
Score = 55.8 bits (133), Expect = 7e-08
Identities = 28/67 (41%), Positives = 42/67 (61%)
Frame = +3
Query: 241 DPFLDLSLEILKADSLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTIHKAPYVL 300
+ F DLSL+I + S+ L NF++ E L+ +K + C +C +A K++ I K P+VL
Sbjct: 156 ETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDK-FFCDKCCSLQEAQKRMKIKKPPHVL 332
Query: 301 AIHLKRF 307
IHLKRF
Sbjct: 333 VIHLKRF 353
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,916,493
Number of Sequences: 63676
Number of extensions: 538221
Number of successful extensions: 2776
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 2732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2755
length of query: 835
length of database: 12,639,632
effective HSP length: 105
effective length of query: 730
effective length of database: 5,953,652
effective search space: 4346165960
effective search space used: 4346165960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC122160.3