BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121245.5 + phase: 0
(72 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232032 weakly similar to UP|Q6K376 (Q6K376) ABC transporter-li... 103 2e-23
CD400122 102 4e-23
TC229551 weakly similar to UP|Q6X4V5 (Q6X4V5) ABC transporter, p... 72 7e-14
TC218418 homologue to UP|Q6X4V5 (Q6X4V5) ABC transporter, partia... 66 3e-12
BI701600 54 2e-08
BE803620 homologue to GP|13605839|gb| At2g01320/F10A8.20 {Arabid... 50 2e-07
BM892277 46 4e-06
BG509363 similar to GP|14331118|e ABC1 protein {Nicotiana plumba... 44 2e-05
TC217803 similar to UP|Q9AT00 (Q9AT00) At1g65410/T8F5_19, partia... 42 8e-05
AW471726 similar to PIR|T45888|T45 ABC transporter-like protein ... 40 3e-04
TC214401 weakly similar to UP|Q949G3 (Q949G3) ABC1 protein, part... 38 0.001
CK606293 37 0.001
AW308906 35 0.006
TC205958 similar to UP|Q93YY0 (Q93YY0) 68 kDa protein HP68, part... 35 0.007
TC227035 similar to UP|Q9M1H3 (Q9M1H3) ABC transporter-like prot... 33 0.021
TC233514 similar to UP|Q8LPQ6 (Q8LPQ6) At4g25450/M7J2_180, parti... 33 0.028
BI973264 similar to GP|19335722|gb transporter associated with a... 33 0.028
BE661812 33 0.036
TC219029 similar to UP|Q93ZN6 (Q93ZN6) AT5g64840/MXK3_6, partial... 32 0.061
TC207563 similar to UP|Q9ZRG2 (Q9ZRG2) P-glycoprotein, partial (... 32 0.080
>TC232032 weakly similar to UP|Q6K376 (Q6K376) ABC transporter-like protein,
partial (11%)
Length = 799
Score = 103 bits (256), Expect = 2e-23
Identities = 52/62 (83%), Positives = 55/62 (87%)
Frame = +2
Query: 6 EDEVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTL 65
E E GTCL+WKD+ V T S GKNGSKSIL+GLTGYAKPGQLLAIMGPSGCGKSTLLDTL
Sbjct: 539 EREEKGTCLSWKDVRV-TASVGKNGSKSILEGLTGYAKPGQLLAIMGPSGCGKSTLLDTL 715
Query: 66 AG 67
AG
Sbjct: 716 AG 721
>CD400122
Length = 585
Score = 102 bits (254), Expect = 4e-23
Identities = 49/66 (74%), Positives = 56/66 (84%)
Frame = -1
Query: 2 KREKEDEVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTL 61
K +ED+ +G LTW+D+WV T+SNGKNG K ILQGL GYAKPG+LLAIMGPSGCGKSTL
Sbjct: 327 KDGEEDQEEGVFLTWEDLWV-TVSNGKNGRKPILQGLKGYAKPGKLLAIMGPSGCGKSTL 151
Query: 62 LDTLAG 67
LD LAG
Sbjct: 150 LDALAG 133
>TC229551 weakly similar to UP|Q6X4V5 (Q6X4V5) ABC transporter, partial
(34%)
Length = 1436
Score = 71.6 bits (174), Expect = 7e-14
Identities = 38/60 (63%), Positives = 47/60 (78%)
Frame = +3
Query: 8 EVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
E + LTW+++ T++NGKN K IL GLTGYA+PG+LLAI+GPSG GKSTLLD LAG
Sbjct: 3 EQNDITLTWENLEA-TVTNGKN-RKLILHGLTGYAQPGRLLAIIGPSGSGKSTLLDALAG 176
>TC218418 homologue to UP|Q6X4V5 (Q6X4V5) ABC transporter, partial (49%)
Length = 1220
Score = 66.2 bits (160), Expect = 3e-12
Identities = 33/54 (61%), Positives = 44/54 (81%), Gaps = 1/54 (1%)
Frame = +1
Query: 14 LTWKDIWVN-TISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
LTWKD+ V T+SNG+ ++++L+GLTGYA+PG A+MGPSG GKSTLLD L+
Sbjct: 241 LTWKDLTVMVTLSNGE--TQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALS 396
>BI701600
Length = 426
Score = 53.9 bits (128), Expect = 2e-08
Identities = 24/41 (58%), Positives = 33/41 (79%)
Frame = +3
Query: 27 GKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
G ++IL+G+TG A+PG++LA++GPSG GKSTLL LAG
Sbjct: 51 GAPKERTILKGVTGIAQPGEILAVLGPSGSGKSTLLHALAG 173
>BE803620 homologue to GP|13605839|gb| At2g01320/F10A8.20 {Arabidopsis
thaliana}, partial (8%)
Length = 413
Score = 50.4 bits (119), Expect = 2e-07
Identities = 23/34 (67%), Positives = 30/34 (87%)
Frame = +3
Query: 34 ILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
+L+ ++G AKPG+LLAIMGPSG GK+TLL+ LAG
Sbjct: 294 LLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAG 395
>BM892277
Length = 421
Score = 45.8 bits (107), Expect = 4e-06
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = +2
Query: 4 EKEDEVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLD 63
E+E EV+ +C +G + +L+ ++ AKP ++LAI+GPSG GKS+LL+
Sbjct: 191 EEEAEVEQSC---------------SGVRHVLKNVSFQAKPWEILAIVGPSGAGKSSLLE 325
Query: 64 TLAG 67
LAG
Sbjct: 326 ILAG 337
>BG509363 similar to GP|14331118|e ABC1 protein {Nicotiana plumbaginifolia},
partial (8%)
Length = 455
Score = 43.5 bits (101), Expect = 2e-05
Identities = 19/34 (55%), Positives = 27/34 (78%)
Frame = +1
Query: 34 ILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
+L+G++G +PG L A+MG SG GK+TL+D LAG
Sbjct: 331 LLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 432
>TC217803 similar to UP|Q9AT00 (Q9AT00) At1g65410/T8F5_19, partial (81%)
Length = 1563
Score = 41.6 bits (96), Expect = 8e-05
Identities = 24/65 (36%), Positives = 38/65 (57%)
Frame = +3
Query: 3 REKEDEVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLL 62
R+ ED+ D + +D++ + G K IL G++ K G+ + I+GPSG GKST+L
Sbjct: 312 RDHEDDSD-VLIECRDVYKSF------GEKKILNGVSFKIKHGEAVGIIGPSGTGKSTVL 470
Query: 63 DTLAG 67
+AG
Sbjct: 471 KIIAG 485
>AW471726 similar to PIR|T45888|T45 ABC transporter-like protein -
Arabidopsis thaliana, partial (6%)
Length = 425
Score = 39.7 bits (91), Expect = 3e-04
Identities = 18/34 (52%), Positives = 25/34 (72%)
Frame = +3
Query: 34 ILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
+L +TG +PG L A+MG SG GK+TL+D L+G
Sbjct: 252 LLCDITGAFRPGILTALMGVSGAGKTTLMDVLSG 353
>TC214401 weakly similar to UP|Q949G3 (Q949G3) ABC1 protein, partial (18%)
Length = 1177
Score = 37.7 bits (86), Expect = 0.001
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +1
Query: 34 ILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
ILQ ++G KP ++ ++GP G GK+TLL LAG
Sbjct: 763 ILQNVSGIIKPRRMTLLLGPPGSGKTTLLLALAG 864
>CK606293
Length = 782
Score = 37.4 bits (85), Expect = 0.001
Identities = 16/35 (45%), Positives = 25/35 (70%)
Frame = -3
Query: 33 SILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
+IL+ ++G KPG++ ++GP GK+TLL LAG
Sbjct: 171 NILEDVSGIIKPGRMTLLLGPPSSGKTTLLLALAG 67
>AW308906
Length = 445
Score = 35.4 bits (80), Expect = 0.006
Identities = 14/30 (46%), Positives = 24/30 (79%)
Frame = +3
Query: 33 SILQGLTGYAKPGQLLAIMGPSGCGKSTLL 62
S+ + L+ A+ G+ LA++GPSGCGKS+++
Sbjct: 225 SVFRNLSLRARAGKTLALVGPSGCGKSSVI 314
>TC205958 similar to UP|Q93YY0 (Q93YY0) 68 kDa protein HP68, partial (22%)
Length = 623
Score = 35.0 bits (79), Expect = 0.007
Identities = 16/30 (53%), Positives = 21/30 (69%)
Frame = +1
Query: 43 KPGQLLAIMGPSGCGKSTLLDTLAGTNKLN 72
+PGQ+L ++G +G GKST L LAG K N
Sbjct: 430 RPGQVLGLVGTNGIGKSTALKVLAGKLKPN 519
>TC227035 similar to UP|Q9M1H3 (Q9M1H3) ABC transporter-like protein
(At3g54540), partial (56%)
Length = 1561
Score = 33.5 bits (75), Expect = 0.021
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 45 GQLLAIMGPSGCGKSTLLDTLAG 67
G +AI+GP+G GKSTLL+ LAG
Sbjct: 626 GTRVAIVGPNGAGKSTLLNLLAG 694
>TC233514 similar to UP|Q8LPQ6 (Q8LPQ6) At4g25450/M7J2_180, partial (20%)
Length = 505
Score = 33.1 bits (74), Expect = 0.028
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 34 ILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
IL+GL K G + A++GPSG GKST++ L+
Sbjct: 186 ILRGLNLRLKFGTVTALVGPSGAGKSTVVQLLS 284
>BI973264 similar to GP|19335722|gb transporter associated with antigen
processing-like protein {Arabidopsis thaliana}, partial
(14%)
Length = 346
Score = 33.1 bits (74), Expect = 0.028
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +2
Query: 33 SILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTL 65
S++Q + PG+++AI+G SG GKSTL++ L
Sbjct: 242 SVVQHVNFVVHPGEVVAIVGLSGSGKSTLVNLL 340
>BE661812
Length = 747
Score = 32.7 bits (73), Expect = 0.036
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 34 ILQGLTGYAKPGQLLAIMGPSGCGKSTLL 62
+L+ GYA PG + IMGP+ GKSTL+
Sbjct: 595 VLRVQLGYALPGTMTRIMGPA*SGKSTLI 681
>TC219029 similar to UP|Q93ZN6 (Q93ZN6) AT5g64840/MXK3_6, partial (34%)
Length = 889
Score = 32.0 bits (71), Expect = 0.061
Identities = 13/21 (61%), Positives = 16/21 (75%)
Frame = +3
Query: 50 IMGPSGCGKSTLLDTLAGTNK 70
I+GP+GCGKSTLL + G K
Sbjct: 18 IIGPNGCGKSTLLKLIMGLEK 80
>TC207563 similar to UP|Q9ZRG2 (Q9ZRG2) P-glycoprotein, partial (24%)
Length = 1164
Score = 31.6 bits (70), Expect = 0.080
Identities = 11/20 (55%), Positives = 18/20 (90%)
Frame = +1
Query: 43 KPGQLLAIMGPSGCGKSTLL 62
+ G+ LA++GPSGCGKS+++
Sbjct: 244 RAGKTLALVGPSGCGKSSII 303
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,291,482
Number of Sequences: 63676
Number of extensions: 32758
Number of successful extensions: 185
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of query: 72
length of database: 12,639,632
effective HSP length: 48
effective length of query: 24
effective length of database: 9,583,184
effective search space: 229996416
effective search space used: 229996416
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)
Medicago: description of AC121245.5