BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121242.1 + phase: 0 /pseudo
(403 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial ... 141 6e-34
TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kin... 135 4e-32
TC222094 82 3e-27
CF922341 39 0.005
TC217698 similar to UP|Q89GY6 (Q89GY6) Blr6209 protein, partial ... 31 1.1
TC216056 similar to GB|AAP37836.1|30725628|BT008477 At2g39450 {A... 31 1.1
TC213161 30 2.0
TC227422 similar to UP|P92973 (P92973) CCA1 (MYB-related transcr... 29 3.3
TC231730 29 3.3
BQ610369 similar to GP|9759119|dbj AMP-binding protein {Arabidop... 28 5.7
TC204721 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17... 28 5.7
TC218605 similar to GB|AAP31938.1|30387545|BT006594 At2g32480 {A... 28 7.4
BE823795 weakly similar to PIR|T12040|T120 cysteine proteinase (... 28 9.7
TC224727 Glycine max disease resistance-like KR9 pseudogene, par... 28 9.7
TC215574 similar to UP|O04076 (O04076) ACC-oxidase, partial (98%) 28 9.7
TC224715 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%) 28 9.7
TC231975 similar to PIR|T00986|T00986 yeast pheromone receptor-l... 28 9.7
>TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial (3%)
Length = 1144
Score = 141 bits (355), Expect = 6e-34
Identities = 85/247 (34%), Positives = 135/247 (54%), Gaps = 3/247 (1%)
Frame = -3
Query: 6 LKEYATPSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLS 65
L++Y++ + + I P V P+L+ L+Q N F G P EDP H+++++ +
Sbjct: 902 LEDYSSSTVPQFFTSIAQPEVQAQTITYPPSLIQLIQSNFFHGLPNEDPYAHLATYIEIC 723
Query: 66 GTIK---ENQEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAK 122
TI+ +A+RL L FSL A W HS + S+ SWD++ FL ++FP SKTA+
Sbjct: 722 NTIRLAGVPADAIRLSLLSFSLSGEAKRWLHSFKGNSLKSWDEVVEKFLKKYFPESKTAE 543
Query: 123 LRDQITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAA 182
+ I+ F+Q ESL EA ERF+ +LR P HG + + ++ F + L +K VDA+
Sbjct: 542 GKAAISSFHQFPDESLSEALERFRGLLRKTPTHGFSEPIQLNIFIDELRPESKQLVDASV 363
Query: 183 GGALMNKNYTEAYALIEDMAQNHYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEAL 242
GG + K EA LIE MA + +RA P KK + E++ + L A+ + L
Sbjct: 362 GGKIKMKTPDEAMDLIESMAASDIAILRDRA---HIPTKK--SLLELTSQDTLLAQNKLL 198
Query: 243 TQKIEKL 249
++++E L
Sbjct: 197 SKQLETL 177
>TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kinase/response
regulator, partial (3%)
Length = 1374
Score = 135 bits (339), Expect = 4e-32
Identities = 80/210 (38%), Positives = 113/210 (53%), Gaps = 3/210 (1%)
Frame = +2
Query: 3 ERTLKEYATPSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFL 62
ERTL+E P YP + +K L++L+ + F G EDP+ H+ F
Sbjct: 434 ERTLREMVAPDFTYESLCNQYPD-EDVPYVLKTGLIHLLPK--FHGLVGEDPHKHLKEFH 604
Query: 63 RLSGTIKE---NQEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSK 119
+ T+K ++ + L FP SL A W + L SI +WDD++R FL +FFP S+
Sbjct: 605 IVCSTMKPPDVQEDHIFLKAFPHSLEGVAKDWLYYLAPRSIFNWDDLKRVFLEKFFPASR 784
Query: 120 TAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVD 179
T +R I+ Q ESLYE WERFK+ CPHH + K L++ FY LS + +D
Sbjct: 785 TTTIRKDISGIRQLSRESLYEYWERFKKSCASCPHHQISKQLLL*YFYEELSNMKRSMID 964
Query: 180 AAAGGALMNKNYTEAYALIEDMAQNHYQWT 209
AA+GGAL + TEA LI+ MA N Q++
Sbjct: 965 AASGGALGDMTPTEARNLIKKMASNSQQFS 1054
>TC222094
Length = 984
Score = 82.4 bits (202), Expect(2) = 3e-27
Identities = 41/119 (34%), Positives = 67/119 (55%), Gaps = 3/119 (2%)
Frame = -2
Query: 5 TLKEYATPSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRL 64
TL++Y++P + I P V NF +L+ L+Q N F G PTEDP H+++++ +
Sbjct: 845 TLEDYSSPIIPQYFTSIARPEVQTANFSYPYSLIQLIQGNLFYGLPTEDPYAHLATYIDI 666
Query: 65 SGTIK---ENQEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKT 120
T+K ++A+ L LF FSL A W S + ++ +W++ FL ++FP SKT
Sbjct: 665 CNTVKIVGVPEDAIHLDLFCFSLAGEARTWLRSFKGNNLRTWNEXXEKFLKKYFPESKT 489
Score = 57.8 bits (138), Expect(2) = 3e-27
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Frame = -3
Query: 126 QITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGA 185
+I+ F+Q ESL EA +RF +L P HG + + ++ F +G+ +K +DA+AGG
Sbjct: 472 EISSFHQHPHESLSEALDRFHGLLWKTPTHGFSEPVQLNIFIDGMQPHSKQLLDASAGGK 293
Query: 186 LMNKNYTEAYALIEDMAQNHYQWTNERAVTTPTPFKKEAGIYE-----VSEYNHLAAKVE 240
+ K EA LIE+MA N Y ++ P+P ++ + E + E +
Sbjct: 292 IKLKTPEEAIELIENMAANDYVILRDQ---EPSPQEESTRLEELLVQFMQETRSHQKSTD 122
Query: 241 ALTQKIEKLNVKAVP 255
A + +E K VP
Sbjct: 121 AAIRNLEVQLAKLVP 77
>CF922341
Length = 675
Score = 38.5 bits (88), Expect = 0.005
Identities = 26/108 (24%), Positives = 52/108 (48%)
Frame = +1
Query: 7 KEYATPSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSG 66
++YA + EE + + P + I P ++ +++ G T P H+ + + G
Sbjct: 349 EDYAFANLEE---LFLVPNI------ITPPKFKVLDFDKYKG--TTCPKNHLKMYCQKMG 495
Query: 67 TIKENQEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARF 114
+++E + +H F SL A W+ +LE + SW D+ AF+ ++
Sbjct: 496 AYAKDEELL-IHSFQESLTGVAVTWYTNLEPSRVHSWKDLMVAFVRQY 636
>TC217698 similar to UP|Q89GY6 (Q89GY6) Blr6209 protein, partial (5%)
Length = 865
Score = 30.8 bits (68), Expect = 1.1
Identities = 18/46 (39%), Positives = 23/46 (49%), Gaps = 5/46 (10%)
Frame = +2
Query: 286 QLNYAQYNQGMRPNQNF-----YKNPQGSYGQAAPPGYTNNQRVAQ 326
Q NY Q +Q P QN+ PQ +YGQA+ P Y Q+ Q
Sbjct: 44 QXNYGQASQNYPPQQNYGMTSQNYTPQQNYGQAS-PNYPPQQKYGQ 178
>TC216056 similar to GB|AAP37836.1|30725628|BT008477 At2g39450 {Arabidopsis
thaliana;} , partial (88%)
Length = 1617
Score = 30.8 bits (68), Expect = 1.1
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +2
Query: 13 STEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKENQ 72
S P + I P + N ++ + + Q+Q SGSP PN++ F+R Q
Sbjct: 1298 SLSSPVSCICEPFLVVRNLNLRASH*EVGYQSQISGSPDNIPNVYHDRFIR--------Q 1453
Query: 73 EAVRLHL 79
+ R HL
Sbjct: 1454 DPFRFHL 1474
>TC213161
Length = 502
Score = 30.0 bits (66), Expect = 2.0
Identities = 17/62 (27%), Positives = 25/62 (39%), Gaps = 3/62 (4%)
Frame = +1
Query: 153 PHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKN---YTEAYALIEDMAQNHYQWT 209
PH+ L WL V +N ++T A G N N E +++D+ W
Sbjct: 109 PHNNLSSWLDVSEDHNQKQFSTLSPTITACGSFSNNGNGRFLREESGVVDDVISPDLAWV 288
Query: 210 NE 211
NE
Sbjct: 289 NE 294
>TC227422 similar to UP|P92973 (P92973) CCA1 (MYB-related transcription
factor (CCA1); supported by cDNA: gi:1777442) (MYB
transcription factor), partial (11%)
Length = 901
Score = 29.3 bits (64), Expect = 3.3
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = -2
Query: 71 NQEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDM----RRAFLARFFPPSKTAKLRDQ 126
N++ +LH FPF L+ H S+ W + + F++ FF P+ +LR +
Sbjct: 360 NKQITKLHTFPFFLK-------H*NPQNSVQKWTSLATKQKHCFVSLFFYPTLLFQLRIE 202
Query: 127 ITRFNQKD 134
T +D
Sbjct: 201 DTLLRSRD 178
>TC231730
Length = 479
Score = 29.3 bits (64), Expect = 3.3
Identities = 10/29 (34%), Positives = 21/29 (71%)
Frame = -2
Query: 333 LLENCIANQNKNLQELKNQTGFLNDSLSP 361
++ NCI NQ+ NL ++ + GF+++++ P
Sbjct: 436 VINNCIKNQSSNLLKIDD*IGFIHENIYP 350
>BQ610369 similar to GP|9759119|dbj AMP-binding protein {Arabidopsis
thaliana}, partial (24%)
Length = 441
Score = 28.5 bits (62), Expect = 5.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 360 SPHTPKCLRPKSPKWPNKWPPLLKHQESFLVNLKQTPKPM 399
SP C P S + PP+L+ Q + + +QTPKP+
Sbjct: 230 SPSPATCSTPPSTRMT---PPILRSQSNHTRDSRQTPKPL 120
>TC204721 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
{Arabidopsis thaliana;} , partial (30%)
Length = 1762
Score = 28.5 bits (62), Expect = 5.7
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 3 ERTLKEYATPSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSP 50
ERTLK TP E +VY ++G N PA+ Q + P
Sbjct: 410 ERTLKIDGTPEQIESAKQLVYQVISGENRVRNPAMSGGYPQQGYQSRP 553
>TC218605 similar to GB|AAP31938.1|30387545|BT006594 At2g32480 {Arabidopsis
thaliana;} , partial (50%)
Length = 931
Score = 28.1 bits (61), Expect = 7.4
Identities = 22/62 (35%), Positives = 25/62 (39%), Gaps = 11/62 (17%)
Frame = +1
Query: 256 PSSASPPCEVCGITGHIGVD----CQ------LGSAANIEQL-NYAQYNQGMRPNQNFYK 304
P P C HIG+D CQ GS AN NYA YN G+ P + Y
Sbjct: 484 PCGYKPSAFACFRWRHIGIDPN*GCQGWEKATFGSGANDHVFWNYACYNSGVIPYCS*YP 663
Query: 305 NP 306
P
Sbjct: 664 KP 669
>BE823795 weakly similar to PIR|T12040|T120 cysteine proteinase (EC 3.4.22.-)
2 precursor - kidney bean, partial (9%)
Length = 603
Score = 27.7 bits (60), Expect = 9.7
Identities = 20/65 (30%), Positives = 29/65 (43%)
Frame = +2
Query: 334 LENCIANQNKNLQELKNQTGFLNDSLSPHTPKCLRPKSPKWPNKWPPLLKHQESFLVNLK 393
L + ++ L + + T SL+P KCL SP WP+ LL HQ ++L
Sbjct: 62 LRRVLLKHHRYLSDSSSSTF*TLHSLTP-VRKCLSLFSP-WPSPASSLLPHQNQTPLSLH 235
Query: 394 QTPKP 398
P P
Sbjct: 236 PPPNP 250
>TC224727 Glycine max disease resistance-like KR9 pseudogene, partial
sequence
Length = 1638
Score = 27.7 bits (60), Expect = 9.7
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 360 SPHTPKCLRPKSP--KWPNKWPPLLKHQESFLVNLKQTP 396
S +P P SP WP+ PPL +H +S L TP
Sbjct: 812 STSSPSSSAPSSPPSSWPSSPPPLFQHSDSPLELELATP 928
>TC215574 similar to UP|O04076 (O04076) ACC-oxidase, partial (98%)
Length = 1169
Score = 27.7 bits (60), Expect = 9.7
Identities = 20/76 (26%), Positives = 35/76 (45%), Gaps = 3/76 (3%)
Frame = +3
Query: 105 DMRRAFLARFFPPSKTAKLRDQITRFNQKDGESLYEAWERFKEMLRL-CPHHGLEKWLIV 163
D F R P S +++ D + E + + +E+L L C + GLEK +
Sbjct: 282 DWESTFFLRHLPTSNISEIPDLSQEYRDAMKEFAQKLEKLAEELLDLLCENLGLEKGYLK 461
Query: 164 HTFY--NGLSYTTKMS 177
+ FY G ++ TK++
Sbjct: 462 NAFYGSRGPNFGTKVA 509
>TC224715 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%)
Length = 1270
Score = 27.7 bits (60), Expect = 9.7
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 360 SPHTPKCLRPKSP--KWPNKWPPLLKHQESFLVNLKQTP 396
S +P P SP WP+ PPL +H +S L TP
Sbjct: 815 STSSPSSSAPSSPPSSWPSSPPPLFQHSDSPLELELATP 931
>TC231975 similar to PIR|T00986|T00986 yeast pheromone receptor-like protein
AR781 [imported] - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (22%)
Length = 799
Score = 27.7 bits (60), Expect = 9.7
Identities = 19/56 (33%), Positives = 30/56 (52%), Gaps = 2/56 (3%)
Frame = -3
Query: 94 SLEVGSITSWDDMRRAFLARFFPPSK-TAKLRDQITRFNQK-DGESLYEAWERFKE 147
SL++G +T F R FPPSK +A R+ +R+ K + +S +W R +E
Sbjct: 425 SLDLGDVTGV*SRGGGFKGRIFPPSKSSAAEREGRSRWPLKLNSKSCCSSWGRTEE 258
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.131 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,437,767
Number of Sequences: 63676
Number of extensions: 289972
Number of successful extensions: 1705
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1703
length of query: 403
length of database: 12,639,632
effective HSP length: 99
effective length of query: 304
effective length of database: 6,335,708
effective search space: 1926055232
effective search space used: 1926055232
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC121242.1