BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121241.8 - phase: 0
(972 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC234364 similar to UP|ROC5_NICSY (P19684) 33 kDa ribonucleoprot... 33 0.47
TC207932 similar to UP|Q7XYX6 (Q7XYX6) AKIN beta3, partial (91%) 33 0.61
AW458045 33 0.80
TC217761 32 1.0
TC224500 32 1.4
TC211372 32 1.4
TC214159 32 1.4
BQ610650 32 1.8
TC207805 homologue to UP|Q945Q4 (Q945Q4) At2g16800/T24I21.21, pa... 31 2.3
TC205658 weakly similar to UP|Q9LWK9 (Q9LWK9) Oryza sativa (japo... 31 3.0
BE803825 weakly similar to GP|14190425|gb| At1g68400/T2E12_5 {Ar... 31 3.0
TC219129 weakly similar to UP|O23792 (O23792) CND41, chloroplast... 30 4.0
BE210402 similar to GP|536984|gb|AA ORF_o125 {Escherichia coli},... 30 6.7
TC224880 similar to UP|Q9LUZ4 (Q9LUZ4) Zinc finger transcription... 30 6.7
TC207963 similar to GB|AAP37817.1|30725590|BT008458 At1g31190 {A... 29 8.8
TC218290 similar to UP|Q93VG8 (Q93VG8) AT4g17486/AT4g17486, part... 29 8.8
>TC234364 similar to UP|ROC5_NICSY (P19684) 33 kDa ribonucleoprotein,
chloroplast precursor, partial (32%)
Length = 710
Score = 33.5 bits (75), Expect = 0.47
Identities = 22/58 (37%), Positives = 27/58 (45%), Gaps = 6/58 (10%)
Frame = +2
Query: 70 LPPHLSFSKLHPFLPKHSFSFDHPFSTFNL------LSKTLSTFPNFPLTYNPKAANL 121
L PH SFS +HP S S +NL LS T S FP P++ P + NL
Sbjct: 20 LKPHPSFSLIHPMAATASVSSSICNRIYNLSFTHPSLSLTSSNFPQRPVSQKPLSLNL 193
>TC207932 similar to UP|Q7XYX6 (Q7XYX6) AKIN beta3, partial (91%)
Length = 752
Score = 33.1 bits (74), Expect = 0.61
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 65 FFFSSLPPHLSFSKLH-PFLPKHSFSFDHPFS 95
F F+SL L F++LH PFLP H+F F PFS
Sbjct: 28 FLFASL---LGFAELHFPFLPIHAFCFRFPFS 114
>AW458045
Length = 421
Score = 32.7 bits (73), Expect = 0.80
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = -3
Query: 38 NYIKN--ILSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLHPFLPKHSFSFDHPFS 95
+Y KN I++T K L + P TS F+ K F S L LS L P SFSFD S
Sbjct: 230 DYDKNQ*IMATKKLLVTVIPKLTS-FSCKIFVSWLLSILSSVNLDIVTPD-SFSFDSSPS 57
Query: 96 TFNLLSKTLSTFPNF 110
+FN +S F NF
Sbjct: 56 SFNFISSI--AFNNF 18
>TC217761
Length = 567
Score = 32.3 bits (72), Expect = 1.0
Identities = 21/61 (34%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Frame = +1
Query: 745 VKQICLLLENIQCHMEGGFF---GDWNLENYVAKIIKSRYSHTLEDIVHKIYNKMDLLLF 801
++QIC L N +C + F + L +Y+ + SRY+ + +V K +N DLLLF
Sbjct: 319 LQQICHLF-NCKCILTSQIFLVLFHFILNSYMLPVFPSRYTWSSYCVVQKKFNARDLLLF 495
Query: 802 V 802
V
Sbjct: 496 V 498
>TC224500
Length = 520
Score = 32.0 bits (71), Expect = 1.4
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -2
Query: 9 IRYSHTNRIVLLIDLDP---LLLLLHNTTTTTNYIKNILSTSKTLF 51
++ SHT +L + P LLLLLHNT T +++KN + +LF
Sbjct: 234 LKKSHTPTWLLSLPHFPSFFLLLLLHNTNTNISFVKNPIPKISSLF 97
>TC211372
Length = 1053
Score = 32.0 bits (71), Expect = 1.4
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +3
Query: 302 FRVFGRGEDVNLQGGGRKERLWNVCSDGMAKLKVTVVRKCDAFVKFRSCLSDSVLVREVL 361
F V GR D+ G R+ + + S G +LK+ + K + R C +++ +++
Sbjct: 441 FGVAGRASDLTDHGNPRRAKKRLLESGGGVRLKMRLP-KAEVERLMRGCETEAEAAEKIM 617
Query: 362 GECMKGDSGG 371
G CM + GG
Sbjct: 618 GLCMANNGGG 647
>TC214159
Length = 1142
Score = 32.0 bits (71), Expect = 1.4
Identities = 46/140 (32%), Positives = 61/140 (42%), Gaps = 22/140 (15%)
Frame = -3
Query: 13 HTNRIVLLIDLDPLLL-LLHNTTTTTNYI--KNILSTSKTL-----FSFPPLSTSLFAFK 64
H +I L+ L L LLH T YI ++I+S + FS P +LF+
Sbjct: 786 HCCKIFYLMTLQKFYLCLLHYVTLHI*YIVSRSIISPKSSFT*RWNFSACPYLPTLFSCI 607
Query: 65 FFFSSLP-----------PHLSFS--KLHPFLPKHSFSFDHPFSTF-NLLSKTLSTFPNF 110
FF LP P LSF +LHP HSF F HP + F +++ L F
Sbjct: 606 FFLVQLPDSVKCFILSLSPFLSFCLIQLHP-SKVHSF-FLHPLNHFISVICAKLLFIELF 433
Query: 111 PLTYNPKAANLIDSLTQLLH 130
P + +A I SL LLH
Sbjct: 432 PQLISYRAE--ISSLGGLLH 379
>BQ610650
Length = 447
Score = 31.6 bits (70), Expect = 1.8
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Frame = -3
Query: 68 SSLPPHLSFSKLHPFLPKHSFSFDH---------PFSTFNLLSKTLSTFPNFPLTYN 115
S LP HLSFS +PKH+ DH FST LLS L P L N
Sbjct: 217 SQLPNHLSFSHQFSPVPKHTAF*DH*SLLSPLPLLFSTLPLLSPILQESPRADLVPN 47
>TC207805 homologue to UP|Q945Q4 (Q945Q4) At2g16800/T24I21.21, partial (59%)
Length = 1460
Score = 31.2 bits (69), Expect = 2.3
Identities = 18/46 (39%), Positives = 23/46 (49%), Gaps = 9/46 (19%)
Frame = +2
Query: 66 FFSSLPPHLSFSKL-----HPFLPKHSFSF----DHPFSTFNLLSK 102
F S+ PHL + L HPF P HSF F HP + ++SK
Sbjct: 230 FHPSMKPHLHYRLLLQKPYHPFPPLHSFIFMPPCPHPNPSLRIISK 367
>TC205658 weakly similar to UP|Q9LWK9 (Q9LWK9) Oryza sativa (japonica
cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485D09, partial (72%)
Length = 1153
Score = 30.8 bits (68), Expect = 3.0
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 247 GSALVPFGLIYPKIGVSW--ISVRCCSREVKVQLT 279
GS+ FG+I P+ G SW +++ C+ VK QLT
Sbjct: 185 GSSSKEFGMIKPR*GPSWLALAILLCNSNVKAQLT 81
>BE803825 weakly similar to GP|14190425|gb| At1g68400/T2E12_5 {Arabidopsis
thaliana}, partial (5%)
Length = 409
Score = 30.8 bits (68), Expect = 3.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 72 PHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTL--STFP 108
PH + HPF P S + P + L+SKTL STFP
Sbjct: 9 PHQKTPRFHPFNPSTSHTIGLPTQSSFLVSKTLKSSTFP 125
>TC219129 weakly similar to UP|O23792 (O23792) CND41, chloroplast nucleoid
DNA binding protein precursor, partial (52%)
Length = 1348
Score = 30.4 bits (67), Expect = 4.0
Identities = 31/126 (24%), Positives = 48/126 (37%), Gaps = 3/126 (2%)
Frame = +2
Query: 33 TTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLHPFLPKHSFSFDH 92
T++TT+ + + T++ PP S + A F S+ PP +
Sbjct: 752 TSSTTSSLA-VAKTTRASSGAPPASWASAATPFPLSNKPPQFT----------------- 877
Query: 93 PFSTFNLLSKTLSTFPNFPLTYNPKAANLIDSLTQLLHDYPWEP---NSDADTDTTTPLV 149
S T+S P PL +P A LT +P P S T + +PL
Sbjct: 878 -----TKFSPTVSPPPPAPLATSPSALPPPPMLTSNTLPFPQSPAKTPSTVSTSSASPLA 1042
Query: 150 SPNLIL 155
+PN +L
Sbjct: 1043APNSLL 1060
>BE210402 similar to GP|536984|gb|AA ORF_o125 {Escherichia coli}, partial
(9%)
Length = 420
Score = 29.6 bits (65), Expect = 6.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 44 LSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLHP 81
L+T +LF FPP S F+ ++ S LPP ++ +P
Sbjct: 225 LNTCPSLFPFPPHSLLSFSLYYYSSHLPPFFP*AR*NP 338
>TC224880 similar to UP|Q9LUZ4 (Q9LUZ4) Zinc finger transcription factor-like
protein (AT5g58620/mzn1_70), partial (21%)
Length = 1723
Score = 29.6 bits (65), Expect = 6.7
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 898 SKIPKRKDRTSACYDTVCETPMTRNTRSMTRNTVCETPMTRSTRSSPQ--SIGSDDHNYM 955
S +P K +++ D +P+ ++ S+ TV PM+ T SSP+ S+ + N
Sbjct: 252 SAMPSPKSYSASGLDMTAMSPLALSSTSLPMPTVSTPPMSPLTASSPKSGSLWQNKINLT 431
Query: 956 ADGNQVCGSVAKA 968
Q+ GS KA
Sbjct: 432 PPSLQLPGSRLKA 470
>TC207963 similar to GB|AAP37817.1|30725590|BT008458 At1g31190 {Arabidopsis
thaliana;} , partial (67%)
Length = 1229
Score = 29.3 bits (64), Expect = 8.8
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = -3
Query: 69 SLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLSTFPNFPLTYNPKAANLIDSLTQL 128
S+P SFS P L + SF++ PF T LSKT + P+ T P A++ I + +
Sbjct: 987 SIPLFFSFSVAGPILSR-SFAWS*PFETKTDLSKTQNFPPSIRETV-PPASSTIKTPAAI 814
Query: 129 LHDY 132
H +
Sbjct: 813 SHGF 802
>TC218290 similar to UP|Q93VG8 (Q93VG8) AT4g17486/AT4g17486, partial (68%)
Length = 1333
Score = 29.3 bits (64), Expect = 8.8
Identities = 23/61 (37%), Positives = 29/61 (46%), Gaps = 1/61 (1%)
Frame = +1
Query: 54 PPLSTSLFAFKFFFSSLPPHL-SFSKLHPFLPKHSFSFDHPFSTFNLLSKTLSTFPNFPL 112
PPLS+ F KF F S PH+ SF H F F H + +L + + FP F L
Sbjct: 31 PPLSSLFFFCKFLFFSFIPHMRSF---------HFFFFFHFWDLRSLFFRFM-PFPFFSL 180
Query: 113 T 113
T
Sbjct: 181 T 183
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,593,447
Number of Sequences: 63676
Number of extensions: 709009
Number of successful extensions: 4187
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 4136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4186
length of query: 972
length of database: 12,639,632
effective HSP length: 106
effective length of query: 866
effective length of database: 5,889,976
effective search space: 5100719216
effective search space used: 5100719216
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Medicago: description of AC121241.8