TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121241.7 + phase: 0 /pseudo
         (69 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC208323 similar to UP|Q9LH69 (Q9LH69) Arabidopsis thaliana geno...    62  4e-11
TC210912 homologue to GB|AAT06476.1|46931344|BT012657 At5g12300 ...    25  5.9
BE660015                                                               25  10.0

>TC208323 similar to UP|Q9LH69 (Q9LH69) Arabidopsis thaliana genomic DNA,
           chromosome 3, BAC clone: T21E2, partial (19%)
          Length = 1175

 Score = 62.4 bits (150), Expect = 4e-11
 Identities = 31/56 (55%), Positives = 41/56 (72%), Gaps = 1/56 (1%)
 Frame = +2

Query: 3   QQPSERDFKGEASSDKSKSTLERTKEETGWPSFRQ-VVDLLKLSLEEFTSSILKFM 57
           QQPS++ FKG AS++K    LE +KEE GWPSF Q +VDL KLSLE   S+ ++F+
Sbjct: 245 QQPSQKQFKGLASNEKHMPILESSKEEPGWPSFGQLIVDLSKLSLEALASTFIQFI 412


>TC210912 homologue to GB|AAT06476.1|46931344|BT012657 At5g12300 {Arabidopsis
           thaliana;} , partial (12%)
          Length = 737

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +3

Query: 36  RQVVDLLKLSLEEFTSSILKF-----MSKPHTTERSSSD 69
           +Q+VD+   S+++FT S+ K      + KP   +    D
Sbjct: 252 KQIVDMYMRSMQQFTESLAKMKLPMDLDKPEKVDHGDGD 368


>BE660015 
          Length = 647

 Score = 24.6 bits (52), Expect = 10.0
 Identities = 19/44 (43%), Positives = 24/44 (54%)
 Frame = +1

Query: 6   SERDFKGEASSDKSKSTLERTKEETGWPSFRQVVDLLKLSLEEF 49
           SER   G+AS DK      + KEE GW + R    LL++  EEF
Sbjct: 235 SER*TMGKASRDKRDIYYRKAKEE-GWRA-RSAFKLLQID-EEF 357


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.306    0.122    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,390,019
Number of Sequences: 63676
Number of extensions: 19273
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of query: 69
length of database: 12,639,632
effective HSP length: 45
effective length of query: 24
effective length of database: 9,774,212
effective search space: 234581088
effective search space used: 234581088
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.6 bits)