TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121241.13 - phase: 0 /pseudo
         (869 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP595172 polyprotein [Glycine max]                                    339  4e-93
BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis ...   178  1e-44
BU549069                                                              177  2e-44
NP395548 reverse transcriptase [Glycine max]                          149  5e-36
CF922488                                                              145  1e-34
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)         144  2e-34
NP395547 reverse transcriptase [Glycine max]                          138  9e-33
TC211627                                                               70  4e-26
BE802896                                                              104  1e-22
NP334778 reverse transcriptase [Glycine max]                          100  4e-21
AW570005                                                               98  1e-20
BI317507                                                               97  2e-20
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...    91  2e-18
BQ627806                                                               51  2e-14
BI424213                                                               77  3e-14
BQ299538                                                               51  2e-13
BI425021                                                               70  4e-12
TC213114 weakly similar to UP|Q8W150 (Q8W150) Polyprotein, parti...    69  9e-12
TC211973 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, parti...    67  4e-11
BM142940                                                               44  9e-10

>NP595172 polyprotein [Glycine max]
          Length = 4659

 Score =  339 bits (869), Expect = 4e-93
 Identities = 168/346 (48%), Positives = 237/346 (67%)
 Frame = +1

Query: 3    DYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTRY 62
            DYR LN +T+K+ +P+P +D+L+D+L GA+ FSK+DL SGYHQI V+ ED +KTAFRT +
Sbjct: 1954 DYRALNAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHH 2133

Query: 63   GHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIVL 122
            GHYE+ VMPFG+TNAP  F   MN+IF   L KFV+VF DDILIYS + ++H +H++ VL
Sbjct: 2134 GHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVL 2313

Query: 123  QLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSFL 182
            Q LK+ +L+A+LSKC F  +EV +LGH +SG G+ ++ +KV AV  W TP +V ++R FL
Sbjct: 2314 QTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFL 2493

Query: 183  GLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPDE 242
            GL GYYRRFI+ ++ +A PLT L  K  SF+W+ + E +F +LK+ +T AP+L LP   +
Sbjct: 2494 GLTGYYRRFIKSYANIAGPLTDLLQK-DSFLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQ 2670

Query: 243  PFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYLY 302
            PF++  DAS +G+G VL Q+G  +AY S++L    +    +  EL A+   L  +RHYL 
Sbjct: 2671 PFILETDASGIGVGAVLGQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLL 2850

Query: 303  GS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
            G+ F + +D +SLK L DQ      Q+ WL      DF + Y PGK
Sbjct: 2851 GNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGK 2988



 Score =  158 bits (399), Expect(2) = 4e-39
 Identities = 105/309 (33%), Positives = 157/309 (49%), Gaps = 8/309 (2%)
 Frame = +1

Query: 565  LAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSERT 624
            +AE ++ +IVKLHG+P SIVSDR+  FTS FW+ L    G+ L +SSAYHPQ+DG SE  
Sbjct: 3562 VAEAFMSHIVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVL 3741

Query: 625  IQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFES 684
             + LE  LR    E    W   LP  EF YN +YH S+GM PF  LYGR   T       
Sbjct: 3742 NKCLEMYLRCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPPT----LTR 3909

Query: 685  GESVLLGPDLVHQTIEKVQMIREKMKASQSR----QKSYHDKRKKALEFQEGDHVFLRVT 740
                +  P  V + +     +  K+K + +R     K   DK++  + FQ GD V +++ 
Sbjct: 3910 QACSIDDPAEVREQLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQ 4089

Query: 741  PMTGVGRAL-KSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKY--- 796
            P       L K++KL+ ++ GP+++  ++G VAY++ L P  + +H VFHVSQL+ +   
Sbjct: 4090 PYRQHSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKLEL-PSAARIHPVFHVSQLKPFNGT 4266

Query: 797  VADPSHVIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWEL 856
              DP   +P    ++   +     P++I    +       I  + V       +  TWE 
Sbjct: 4267 AQDPYLPLPLTVTEMGPVMQ----PVKILASRIIIRGHNQIEQILVQWENGLQDEATWED 4434

Query: 857  ESKMLESYP 865
               +  SYP
Sbjct: 4435 IEDIKASYP 4461



 Score = 22.7 bits (47), Expect(2) = 4e-39
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 491  CCSVCLCMFDLSEV*G*ASEACRVVDTIRCARVEVGQHFHGFCDEFAEY 539
            C S+   M DLS  *     A R   T   +   +G+  HGF   F ++
Sbjct: 3324 CQSLYTEMLDLSTS*IKQYTASRTTPTFTYSSTSLGRCSHGFHHRFTKF 3470


>BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis melo},
           partial (9%)
          Length = 410

 Score =  178 bits (451), Expect = 1e-44
 Identities = 88/136 (64%), Positives = 108/136 (78%)
 Frame = -3

Query: 718 SYHDKRKKALEFQEGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGL 777
           SYHDKR+K LEF+ GDHVFLRVTP TGVGRALKS KLTP FIGP+QI ++V  VAY++ L
Sbjct: 408 SYHDKRRKDLEFEVGDHVFLRVTP*TGVGRALKS*KLTPHFIGPFQILKKVDFVAYQIAL 229

Query: 778 PPHLSNLHDVFHVSQLRKYVADPSHVIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDI 837
           PP L++LH+VFHVSQ+ KY+ DPSH++    VQV++NL  ETLPLRI+    K LRGK+I
Sbjct: 228 PPSLTSLHNVFHVSQIHKYINDPSHMVNLDVVQVKENLAHETLPLRIKDMRTKHLRGKEI 49

Query: 838 PLVKVVLGGVTGESLT 853
            LVKV+ GG +GE  T
Sbjct: 48  LLVKVIWGGASGEEAT 1


>BU549069 
          Length = 615

 Score =  177 bits (449), Expect = 2e-44
 Identities = 87/132 (65%), Positives = 104/132 (77%)
 Frame = -1

Query: 737 LRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKY 796
           L+VTP TGVG+ALKS+KLTP FIG +QI +R   VAY++ LPP LSNLH+VFHVSQLR Y
Sbjct: 615 LKVTPRTGVGQALKSRKLTPHFIGHFQILKRAXPVAYQIALPPSLSNLHNVFHVSQLRMY 436

Query: 797 VADPSHVIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWEL 856
           + DPSHV+   DVQV++NLT ETLPLRIE R  K LR K+ PLVKV+ GG +GE  TWEL
Sbjct: 435 IHDPSHVVKLDDVQVKENLTYETLPLRIEDRRTKHLRRKENPLVKVIWGGTSGEDATWEL 256

Query: 857 ESKMLESYPELF 868
           ES+M  +YP LF
Sbjct: 255 ESQMRVAYPSLF 220


>NP395548 reverse transcriptase [Glycine max]
          Length = 762

 Score =  149 bits (376), Expect = 5e-36
 Identities = 78/197 (39%), Positives = 117/197 (58%)
 Frame = +1

Query: 2   IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
           IDYR+LN+ T K+ +PLP +D ++++L G   +  +D   GY+QI V  +D +K AF   
Sbjct: 172 IDYRKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCP 351

Query: 62  YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
           +G + Y+ +PFG+ NAP  F   M  IF   ++K + VF DD  ++  + E   + +++V
Sbjct: 352 FGVFAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMV 531

Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
           LQ   E  L     KC F + E   LGH IS  GI VD +K+D + +   P +V  IRSF
Sbjct: 532 LQRCVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSF 711

Query: 182 LGLAGYYRRFIEGFSKL 198
           LG A +YRRFI+ F+K+
Sbjct: 712 LGQARFYRRFIKDFTKV 762


>CF922488 
          Length = 741

 Score =  145 bits (365), Expect = 1e-34
 Identities = 80/235 (34%), Positives = 126/235 (53%)
 Frame = +3

Query: 2   IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
           +DYR LN  + K+++PLP I+ L+D       FS +D  SGY+QIK+  EDM+KT F T 
Sbjct: 36  VDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAPEDMEKTTFITL 215

Query: 62  YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
           +G + YK M FG+ N    +   M  +F   + K + V+ DD+++ S+ EEEH  +++ +
Sbjct: 216 WGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRTEEEHLVNLRKL 395

Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
            + L++ +L    +KC F +     L  I S  GI VD +KV  + +   P +  +++ F
Sbjct: 396 FRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMAKPHTEKQVQGF 575

Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILI 236
           LG   Y  RFI        PL  L CK +   WD  C  +F  +K+ L    +L+
Sbjct: 576 LGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLINPHVLV 740


>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
          Length = 589

 Score =  144 bits (362), Expect = 2e-34
 Identities = 73/163 (44%), Positives = 102/163 (61%)
 Frame = +1

Query: 171 TPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLT 230
           T KSV +IRSF GLA +YRRF+  FS +A PL +L  K  +F W  + E +F  LK +LT
Sbjct: 100 TLKSVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLKEKLT 279

Query: 231 TAPILILPKPDEPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAV 290
            AP+L LP   + F + CDAS +G+  VL+Q G  +AY S +L     NYPT+D EL A+
Sbjct: 280 KAPVLALPDFSKTFELECDASGVGVRAVLLQGGHPIAYFSEKLHSATLNYPTYDKELYAL 459

Query: 291 VFVLKIWRHYLYGS*FEVFSDHKSLKYLFDQKELNMRQRRWLE 333
           +   + W H+L    F + SDH+SLKY+  + +LN R  +W+E
Sbjct: 460 IRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKWVE 588



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 22/76 (28%), Positives = 38/76 (49%)
 Frame = +2

Query: 139 FWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 198
           F +  + F G ++  +G+ +DP K+ A+ +W  P  V EI   LG +   +  IEG   +
Sbjct: 2   FCVDNIFFSGFVVGRNGVQMDPEKIKAIQEWPPP*KVWEI---LGASMG*QASIEGSFLI 172

Query: 199 ALPLTQLTCKGKSFVW 214
           +L L  L+      +W
Sbjct: 173 SLQLHHLSMSW*RRIW 220


>NP395547 reverse transcriptase [Glycine max]
          Length = 762

 Score =  138 bits (348), Expect = 9e-33
 Identities = 75/197 (38%), Positives = 110/197 (55%)
 Frame = +1

Query: 2   IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
           IDYR+LN+ T K+ YPLP +D ++ +L     +  +D  SGY+QI V  +D +KTAF   
Sbjct: 172 IDYRKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCP 351

Query: 62  YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
           +  + Y+ MPFG+ NA   F   M  IF   ++K + VF DD   +  +      +++ V
Sbjct: 352 FSVFAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKV 531

Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
           LQ  ++  L     KC F + E   LGH IS  GI V   K+D + +   P +V  I SF
Sbjct: 532 LQRCEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSF 711

Query: 182 LGLAGYYRRFIEGFSKL 198
           LG  G+YRRFI+ F+K+
Sbjct: 712 LGHVGFYRRFIKDFTKV 762


>TC211627 
          Length = 1034

 Score = 70.5 bits (171), Expect(2) = 4e-26
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 2/185 (1%)
 Frame = +3

Query: 682 FESGESVLLGPDLVHQTIEKVQ-MIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVT 740
           + +G S +   D +  ++  +   +  +++  Q   K   D  ++ L F  GD V++R+ 
Sbjct: 276 YSAGTSTVEAVDAILHSLATIHHTLTCRLQKYQDSMKRIADSHRRDLTFNIGDWVYVRL* 455

Query: 741 PMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVAD- 799
           P           KL+ +F GPYQI  RVG VAYR+ LPP  S +H +FHVS L+ +    
Sbjct: 456 PYRQTSIQSTYTKLSKRFYGPYQIQARVGQVAYRLQLPP-TSKIHPIFHVSLLKVHHGPI 632

Query: 800 PSHVIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESK 859
           P  ++        ++  ++  PL+    ++ +     IP V V    +  E  TWE  ++
Sbjct: 633 PPELLALPPFSTTNHPLVQ--PLQFLDWKMDESTTPPIPQVLVQWTNLAPEDTTWESWTQ 806

Query: 860 MLESY 864
           + + Y
Sbjct: 807 LKDIY 821



 Score = 67.0 bits (162), Expect(2) = 4e-26
 Identities = 36/78 (46%), Positives = 42/78 (53%)
 Frame = +2

Query: 591 FTSRFWKSLQDALGSKLRVSSAYHPQADGHSERTIQSLEDLLRVCVLEQGGAWDSHLPLI 650
           F S  W  L    G+KLR S+AYHPQ DG +E   + LE  LR  V +    W   L L 
Sbjct: 5   FISGLWHELFHISGTKLRFSTAYHPQTDGQTEVINRILEQYLRAFVHDHPQHWFKFLSLA 184

Query: 651 EFTYNNSYHSSIGMAPFE 668
           E  YN S HS IG +PFE
Sbjct: 185 E*CYNTSVHSGIGFSPFE 238


>BE802896 
          Length = 416

 Score =  104 bits (260), Expect = 1e-22
 Identities = 61/137 (44%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
 Frame = -2

Query: 180 SFLGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPK 239
           SFLG AG+YRRFI  F K+ALPL+ L  K   F ++ +C+ +F+ LKR L T PI+  P 
Sbjct: 415 SFLGHAGFYRRFIRDFRKVALPLSNLLQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPD 236

Query: 240 PDEPFVVYCDASKLGLGGVLMQD----GKVVAYASRQLRIHEKNYPTHDLELAAVVFVLK 295
              PF + CDAS   LG VL Q      +V+ Y+SR L   + NY T + EL A+VF L+
Sbjct: 235 WTAPFELMCDASNYALGVVLAQKIDKLPRVIYYSSRTLDAAQANYTTTEKELLAIVFALE 56

Query: 296 IWRHYLYGS*FEVFSDH 312
            +  YL G+   V+ DH
Sbjct: 55  KFHSYLLGTRIIVYIDH 5


>NP334778 reverse transcriptase [Glycine max]
          Length = 431

 Score =  100 bits (248), Expect = 4e-21
 Identities = 52/140 (37%), Positives = 82/140 (58%)
 Frame = +3

Query: 2   IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
           +DYR LN+ + K+ +PLP ID LM  +    +FS +D  SGY+QIK+  EDM+KT F T 
Sbjct: 12  VDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTFITL 191

Query: 62  YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
           +G + YKVM FG+ N    +   M  +F   + K +  + D+++  S+ EEEH  +++ +
Sbjct: 192 WGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNLQNL 371

Query: 122 LQLLKEKKLYAKLSKCEFWL 141
              L++ +L     KC F L
Sbjct: 372 FGQLRKYRLRLNPRKCVFGL 431


>AW570005 
          Length = 413

 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 53/132 (40%), Positives = 77/132 (58%)
 Frame = -2

Query: 172 PKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTT 231
           P++   +R FL L G+YRRFI+G++ +A PL+ L  K  SFVW  + + +F  LK  +T 
Sbjct: 406 PRTARSLRGFLRLTGFYRRFIKGYAAMAAPLSHLLTKD-SFVWSPEADVAFQALKNVVTN 230

Query: 232 APILILPKPDEPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVV 291
             +L LP   +PF V  DAS   +G VL Q+G  +A+ S++         T+  ELAA+ 
Sbjct: 229 TLVLALPDFTKPFTVETDASGSDMGAVLSQEGHPIAFFSKEFCPKLVRSSTYVHELAAIT 50

Query: 292 FVLKIWRHYLYG 303
            V+K WR YL G
Sbjct: 49  NVVKKWRQYLLG 14


>BI317507 
          Length = 359

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 50/113 (44%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
 Frame = -1

Query: 103 DILIYSKNEEEHAEHMKIVLQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSK 162
           +ILIYS + + H  H+  VL +LK+++L A   KC F  + + +LGH+IS   + +D +K
Sbjct: 353 NILIYSPDWKSHIMHLTAVLDVLKKERLVANRKKCYFSQTTIEYLGHVISKDCVAMDSNK 174

Query: 163 VDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLA-LPLTQLTCKGKSFVW 214
           V +V +W  PK+V  + SFL L GYYR+FI+ + KLA  PLT LT K   F W
Sbjct: 173 VKSVIEWPVPKNVKRVCSFLRLTGYYRKFIKDYGKLAPRPLTDLT-KNDGFKW 18


>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
          Length = 402

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 48/133 (36%), Positives = 76/133 (57%)
 Frame = +2

Query: 34  FSKIDLSSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYL 93
           FS +D  SGY+QI +  ED++KT F T +G + Y+VM FG+ N    +   M  +FH  +
Sbjct: 2   FSFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMM 181

Query: 94  DKFVVVFSDDILIYSKNEEEHAEHMKIVLQLLKEKKLYAKLSKCEFWLSEVSFLGHIISG 153
            K + V+ DD++  S+ E EH  ++  +   L++ +L    +KC F +     LG I+S 
Sbjct: 182 HKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQ 361

Query: 154 SGIVVDPSKVDAV 166
            GI +DP KV A+
Sbjct: 362 KGIEIDPEKVKAL 400


>BQ627806 
          Length = 435

 Score = 50.8 bits (120), Expect(2) = 2e-14
 Identities = 26/67 (38%), Positives = 36/67 (52%)
 Frame = +1

Query: 282 THDLELAAVVFVLKIWRHYLYGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFG 341
           T+  ELAA+   +K WR YL G  F + +DH+SLK L  Q      Q+ +L  L   D+ 
Sbjct: 232 TYVRELAAITVAVKKWRQYLLGHHFVILTDHRSLKELMSQAVQTPEQQIYLARLMGFDYT 411

Query: 342 LNYHPGK 348
           + Y  GK
Sbjct: 412 IQYRAGK 432



 Score = 47.0 bits (110), Expect(2) = 2e-14
 Identities = 22/57 (38%), Positives = 36/57 (62%)
 Frame = +3

Query: 212 FVWDAQCENSFNELKRRLTTAPILILPKPDEPFVVYCDASKLGLGGVLMQDGKVVAY 268
           F W+ + + +F++LK  L  AP+L LP  +  FVV  DAS +G+G +L Q+   +A+
Sbjct: 21  FHWNEEADRAFSQLKLALCQAPVLGLPDFNSSFVVETDASGIGMGAILSQNHHPLAF 191


>BI424213 
          Length = 426

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 45/138 (32%), Positives = 68/138 (48%)
 Frame = +1

Query: 593 SRFWKSLQDALGSKLRVSSAYHPQADGHSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEF 652
           S FWK+L   LG+KL  S+  HPQ DG ++   +SL  LLR  +     +WD +LP +EF
Sbjct: 4   SHFWKTLWAKLGTKLLFSTTCHPQTDGQTKVVNRSLSTLLRALLKGNHKSWDEYLPHVEF 183

Query: 653 TYNNSYHSSIGMAPFETLYGRRCRTPLCWFESGESVLLGPDLVHQTIEKVQMIREKMKAS 712
            YN   H +   +PFE +YG    TPL             DL+   ++    I ++ ++ 
Sbjct: 184 AYNRGVHRTTKQSPFEVVYGFNPLTPL-------------DLIPLPLD-TSFIHKEGESR 321

Query: 713 QSRQKSYHDKRKKALEFQ 730
               K  H++ K  +E Q
Sbjct: 322 SEFVKKMHERVKNQIENQ 375


>BQ299538 
          Length = 426

 Score = 51.2 bits (121), Expect(2) = 2e-13
 Identities = 27/71 (38%), Positives = 40/71 (56%)
 Frame = +3

Query: 604 GSKLRVSSAYHPQADGHSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIG 663
           G+ L++S++YHP  DG +      LE  LR  V +Q       L   E+ YN ++H+S G
Sbjct: 144 GTYLKMSTSYHP*IDGQTVN--HCLETFLRCFVADQPKM*VQWLSWAEYWYNTNFHASTG 317

Query: 664 MAPFETLYGRR 674
             PFE +YGR+
Sbjct: 318 TTPFEVVYGRK 350



 Score = 43.5 bits (101), Expect(2) = 2e-13
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +1

Query: 565 LAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSL 599
           LAEI+   +V LHGVP+S++SD +  F S FWK L
Sbjct: 28  LAEIFTKEVVHLHGVPASVLSDEDPIFVSSFWKEL 132


>BI425021 
          Length = 426

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 34/72 (47%), Positives = 48/72 (66%)
 Frame = -1

Query: 565 LAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSERT 624
           +A ++++ ++KLHG P SIVSDR+  F S FW+ L    G+ LR+SSAYHPQ DG +E  
Sbjct: 261 VASLFLNIVIKLHGFPRSIVSDRDPLFISHFWQDLFRLSGTVLRMSSAYHPQTDGQTEVL 82

Query: 625 IQSLEDLLRVCV 636
            + +E  LR  V
Sbjct: 81  NRVIEQYLRAFV 46


>TC213114 weakly similar to UP|Q8W150 (Q8W150) Polyprotein, partial (7%)
          Length = 810

 Score = 68.9 bits (167), Expect = 9e-12
 Identities = 39/108 (36%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
 Frame = +3

Query: 717 KSYHDKRKKALEFQEGDHVFLRVTPMTGVGRALK-SKKLTPKFIGPYQISERVGTVAYRV 775
           K+Y D+ ++A+    GD V+L++ P      A K ++KL+P+F GPYQI +++G VA+ +
Sbjct: 6   KAYADRSRRAVTLSVGDWVYLKLQPYRLKSLAKKRNEKLSPRFYGPYQIKKQIGLVAFEL 185

Query: 776 GLPPHLSNLHDVFHVSQLRKYVADPSHVIPRADVQVRDNLTIETLPLR 823
            LPP    +H VFH S L+K VA  ++  P   + + ++L+ E   L+
Sbjct: 186 DLPP-ARKIHPVFHASLLKKAVAATANPQP-LPLMLSEDLSSEFFQLK 323


>TC211973 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (4%)
          Length = 730

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 35/92 (38%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
 Frame = +1

Query: 705 IREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMTGVGRALK-SKKLTPKFIGPYQ 763
           +RE +  S     +  +KR++ +E+  GD VFL++ P      A + ++KL+P+F  P+Q
Sbjct: 64  LRENLLKS*DIM*ANTNKRRRDIEYVVGD*VFLKMQPYRRRSLAKRINEKLSPRFYAPFQ 243

Query: 764 ISERVGTVAYRVGLPPHLSNLHDVFHVSQLRK 795
           +  +VGT+AY++ LP H+  +H VFHVS L+K
Sbjct: 244 VFNKVGTIAYKLDLPSHI-KIHPVFHVSLLKK 336


>BM142940 
          Length = 422

 Score = 43.5 bits (101), Expect(2) = 9e-10
 Identities = 21/34 (61%), Positives = 25/34 (72%)
 Frame = -1

Query: 97  VVVFSDDILIYSKNEEEHAEHMKIVLQLLKEKKL 130
           +  FS DILIYS NE +H +H+KIVLQ  KE KL
Sbjct: 260 ICFFSYDILIYSINEGKHEKHLKIVLQTFKEAKL 159



 Score = 38.5 bits (88), Expect(2) = 9e-10
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 129 KLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSV 175
           K+ A   KC F   +  +L H+IS  G+  DP K++ +  W  PK +
Sbjct: 165 KVGANRKKCSFGCKKFEYLVHMISVKGVSADPKKLEVMVAWPIPKEM 25


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.337    0.148    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,458,317
Number of Sequences: 63676
Number of extensions: 606793
Number of successful extensions: 4054
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 3998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4041
length of query: 869
length of database: 12,639,632
effective HSP length: 106
effective length of query: 763
effective length of database: 5,889,976
effective search space: 4494051688
effective search space used: 4494051688
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 63 (28.9 bits)