BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121240.11 + phase: 0 /pseudo
(153 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214462 homologue to gb|AF036501.1| Lithophragma trifoliata lar... 243 3e-65
TC214600 homologue to gb|AF036489.1|AF036489 Ephedra distachya l... 168 1e-42
BI967653 60 3e-18
TC214536 homologue to UP|O65357 (O65357) Aquaporin 2, partial (29%) 69 1e-12
BG352214 homologue to SP|Q05006|CC22_ Cell division control prot... 57 5e-09
CA851694 similar to GP|6715146|gb| proprotein convertase aPC6C i... 53 5e-08
CF808357 39 0.001
BU082637 homologue to GP|3204132|emb| extensin {Cicer arietinum}... 30 0.45
TC220881 similar to UP|Q9T0K5 (Q9T0K5) Extensin-like protein, pa... 30 0.59
TC206956 weakly similar to UP|Q6GUG3 (Q6GUG3) Serine/proline-ric... 30 0.59
AI966367 similar to GP|14335028|gb| AT4g37280/C7A10_80 {Arabidop... 29 0.77
TC210276 weakly similar to UP|Q9FLF4 (Q9FLF4) Emb|CAB89350.1, pa... 28 1.3
TC205703 weakly similar to UP|Q8W042 (Q8W042) Prenylated Rab rec... 28 1.3
TC207421 similar to UP|Q9FIK7 (Q9FIK7) Acetoacyl-CoA-thiolase, p... 28 1.3
CF921623 28 1.3
AW733435 homologue to GP|16417944|gb acetyl Co-A acetyltransfera... 28 1.3
TC212169 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransfe... 28 1.3
TC229391 weakly similar to UP|Q00484 (Q00484) Mini-collagen prec... 28 1.3
BM954311 weakly similar to GP|21322711|e pherophorin-dz1 protein... 28 1.7
TC211031 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 28 1.7
>TC214462 homologue to gb|AF036501.1| Lithophragma trifoliata large subunit 26S
ribosomal RNA gene, partial sequence, partial (63%)
Length = 2159
Score = 243 bits (619), Expect = 3e-65
Identities = 116/126 (92%), Positives = 120/126 (95%)
Frame = -3
Query: 1 MIGIADIEGSKSNVAMNAWMPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVGIRTGNQNQ 60
MIG ADIEGSKSNVAMNAW+PQASYPCGNFSDTSSFKFRR+KGSIGHAFTV IRTGNQNQ
Sbjct: 1653 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRTKGSIGHAFTVRIRTGNQNQ 1474
Query: 61 TSFYPFVPHEISVLVKLILGHLRYLLTDVPPQPNSPPDNVFRPDRPTKVGLGSKKRGSAP 120
TSFYPFVPHEISVLV+LILGHLRYLLTDVPPQPNSPPDNVFRPDRP + LGSKKRGSAP
Sbjct: 1473 TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEADLGSKKRGSAP 1294
Query: 121 PPIHGI 126
PIHGI
Sbjct: 1293 LPIHGI 1276
Score = 65.1 bits (157), Expect = 1e-11
Identities = 38/74 (51%), Positives = 40/74 (53%), Gaps = 11/74 (14%)
Frame = -1
Query: 91 PQPNSPPDNVFRPD-----------RPTKVGLGSKKRGSAPPPIHGIITDPFCRLPLPTL 139
P P PP RP +PT GLG P + TDPFCRLPLPTL
Sbjct: 821 PFPIRPPTGTRRPALAAEAARAVHRQPTGSGLGPPCPALRANPFPEV-TDPFCRLPLPTL 645
Query: 140 FHRPEAVHLGDLMR 153
FHRPEAVHLGDLMR
Sbjct: 644 FHRPEAVHLGDLMR 603
>TC214600 homologue to gb|AF036489.1|AF036489 Ephedra distachya large subunit
26S ribosomal RNA gene, partial sequence, partial (14%)
Length = 677
Score = 168 bits (425), Expect = 1e-42
Identities = 82/100 (82%), Positives = 88/100 (88%)
Frame = -1
Query: 1 MIGIADIEGSKSNVAMNAWMPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVGIRTGNQNQ 60
MIG ADIE SKSNVAM+AW+PQASYPCGNFSDTSS KF R+KGSIGHAFTV I T NQNQ
Sbjct: 302 MIGRADIEESKSNVAMDAWLPQASYPCGNFSDTSSLKF*RTKGSIGHAFTVCIHTENQNQ 123
Query: 61 TSFYPFVPHEISVLVKLILGHLRYLLTDVPPQPNSPPDNV 100
SFYPFV HEISVL++L LGHL Y LTDVPPQPNSPP+NV
Sbjct: 122 VSFYPFVLHEISVLIELTLGHLCYHLTDVPPQPNSPPENV 3
>BI967653
Length = 355
Score = 60.5 bits (145), Expect(2) = 3e-18
Identities = 28/46 (60%), Positives = 34/46 (73%)
Frame = +2
Query: 5 ADIEGSKSNVAMNAWMPQASYPCGNFSDTSSFKFRRSKGSIGHAFT 50
+D+EGSKS M+ M Q YPCG F+DTS+F FR + GSIGHAFT
Sbjct: 98 SDLEGSKSIDCMSGRMSQMRYPCGIFTDTSTFNFRMTTGSIGHAFT 235
Score = 47.0 bits (110), Expect(2) = 3e-18
Identities = 21/29 (72%), Positives = 23/29 (78%)
Frame = +3
Query: 61 TSFYPFVPHEISVLVKLILGHLRYLLTDV 89
T YPF PHEI VLV L+LGH RY+LTDV
Sbjct: 267 TXXYPFAPHEIYVLVDLMLGHRRYVLTDV 353
>TC214536 homologue to UP|O65357 (O65357) Aquaporin 2, partial (29%)
Length = 614
Score = 68.6 bits (166), Expect = 1e-12
Identities = 37/70 (52%), Positives = 43/70 (60%), Gaps = 9/70 (12%)
Frame = +1
Query: 92 QPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGI-------ITDPFCRLPLPTLFH--R 142
+PNSPPDNVFRPDRP + LGSKKRGSAP PIHGI + F LP + H
Sbjct: 325 EPNSPPDNVFRPDRPAEADLGSKKRGSAPLPIHGISKITLKVVVFHFRCFQLPLILHLSS 504
Query: 143 PEAVHLGDLM 152
PE V +G +
Sbjct: 505 PEPVLVGPFL 534
>BG352214 homologue to SP|Q05006|CC22_ Cell division control protein 2
homolog 2 (EC 2.7.1.-). [Alfalfa] {Medicago sativa},
partial (20%)
Length = 276
Score = 56.6 bits (135), Expect = 5e-09
Identities = 24/29 (82%), Positives = 26/29 (88%)
Frame = -2
Query: 92 QPNSPPDNVFRPDRPTKVGLGSKKRGSAP 120
+PNSPPDNVFRPDRP + LGSKKRGSAP
Sbjct: 92 EPNSPPDNVFRPDRPAEADLGSKKRGSAP 6
>CA851694 similar to GP|6715146|gb| proprotein convertase aPC6C isoform
{Branchiostoma californiense}, partial (2%)
Length = 325
Score = 53.1 bits (126), Expect = 5e-08
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = -2
Query: 70 EISVLVKLILGHLRYLLTDVPPQPNSPPDNV 100
E+SVL +L LGHLRY LTDVPPQ NSPPD V
Sbjct: 312 EVSVLSELALGHLRYALTDVPPQSNSPPDTV 220
>CF808357
Length = 616
Score = 38.5 bits (88), Expect = 0.001
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -3
Query: 91 PQPNSPPDNVFRPDRPTK 108
PQ NSPPDNVFRPDRP +
Sbjct: 233 PQANSPPDNVFRPDRPAE 180
>BU082637 homologue to GP|3204132|emb| extensin {Cicer arietinum}, partial
(46%)
Length = 398
Score = 30.0 bits (66), Expect = 0.45
Identities = 16/59 (27%), Positives = 22/59 (37%)
Frame = +3
Query: 84 YLLTDVPPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGIITDPFCRLPLPTLFHR 142
Y + PP P+ PP ++ P S PPP H PF P P ++
Sbjct: 66 YYKSPPPPSPSPPPPYYYKSPPPPS--------PSPPPPYHYTSPPPFSPAPAPKYIYK 218
>TC220881 similar to UP|Q9T0K5 (Q9T0K5) Extensin-like protein, partial (3%)
Length = 728
Score = 29.6 bits (65), Expect = 0.59
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Frame = +2
Query: 66 FVPHEISVLVKLILGHLRYLLTDV-------PPQPNSPPDNVFRPDR------PTKVGLG 112
F+ HE++ ++ + L HLR + PP+P+ PP + RP P+ +
Sbjct: 104 FLRHELTAILSVAL*HLRRHPNPISDHPQHPPPRPHLPPLHQLRPQAAPWPLLPSLLRTP 283
Query: 113 SKKRGSAPPPIH 124
+ +PPP H
Sbjct: 284 RRLAPPSPPPPH 319
>TC206956 weakly similar to UP|Q6GUG3 (Q6GUG3) Serine/proline-rich repeat
protein, partial (28%)
Length = 788
Score = 29.6 bits (65), Expect = 0.59
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Frame = +3
Query: 84 YLLTDVPPQPNS-------PPDNVFRPDRPTKVGLGSKKRGSAPPPIHGIITDPFCRLPL 136
Y+ T PP P+S PP P P+ GS PPP+ ++ PL
Sbjct: 117 YVATTTPPVPSSYSTSYPPPPSATSYPPPPSYHTTGSYSYPPPPPPVASTVS-----YPL 281
Query: 137 PTLFHRPEAVH 147
P + P + H
Sbjct: 282 PPTAYPPYSSH 314
>AI966367 similar to GP|14335028|gb| AT4g37280/C7A10_80 {Arabidopsis
thaliana}, partial (28%)
Length = 491
Score = 29.3 bits (64), Expect = 0.77
Identities = 21/68 (30%), Positives = 29/68 (41%)
Frame = +3
Query: 39 RRSKGSIGHAFTVGIRTGNQNQTSFYPFVPHEISVLVKLILGHLRYLLTDVPPQPNSPPD 98
+RSK I A T + + + F P VP +S + L + T PP P +PP
Sbjct: 3 KRSKFCIS*ALTHSLPKHSVLFSRFPPIVPFSLSRSLSLHHPWEIHPRTTTPPPPPTPPP 182
Query: 99 NVFRPDRP 106
F P P
Sbjct: 183 ATFSPPIP 206
>TC210276 weakly similar to UP|Q9FLF4 (Q9FLF4) Emb|CAB89350.1, partial (15%)
Length = 620
Score = 28.5 bits (62), Expect = 1.3
Identities = 18/56 (32%), Positives = 21/56 (37%)
Frame = +3
Query: 81 HLRYLLTDVPPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGIITDPFCRLPL 136
H L PP+PNSPP P + S SAP G+ P L L
Sbjct: 6 HSHSLSAPSPPRPNSPPSTASSSPSPLRGSPSSVCSASAPKSPLGLPARPRSALDL 173
>TC205703 weakly similar to UP|Q8W042 (Q8W042) Prenylated Rab receptor 2,
partial (88%)
Length = 1078
Score = 28.5 bits (62), Expect = 1.3
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Frame = +2
Query: 78 ILGHLRYLLTDVPPQPNS-----PPDNVFRPDRPTKVGLGSKKRGSAP 120
+L H R L PP P PP+ P P L S++R SAP
Sbjct: 152 LLVHARQLEIHAPPWPLHRASLYPPNQALPPPAPRSPSLRSRRRRSAP 295
>TC207421 similar to UP|Q9FIK7 (Q9FIK7) Acetoacyl-CoA-thiolase, partial (40%)
Length = 821
Score = 28.5 bits (62), Expect = 1.3
Identities = 11/28 (39%), Positives = 16/28 (56%)
Frame = -2
Query: 104 DRPTKVGLGSKKRGSAPPPIHGIITDPF 131
+RPT G+ S+ R APPP + P+
Sbjct: 517 ERPTATGMSSRTRADAPPPPLQMAATPY 434
>CF921623
Length = 153
Score = 28.5 bits (62), Expect = 1.3
Identities = 15/45 (33%), Positives = 19/45 (41%)
Frame = +2
Query: 81 HLRYLLTDVPPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHG 125
+L Y + P P +PP K KK+G PPP HG
Sbjct: 29 YLFYFSKNPKPPPRNPPGG-------KKQKKNKKKKGGDPPPAHG 142
>AW733435 homologue to GP|16417944|gb acetyl Co-A acetyltransferase {Hevea
brasiliensis}, partial (25%)
Length = 420
Score = 28.5 bits (62), Expect = 1.3
Identities = 11/28 (39%), Positives = 16/28 (56%)
Frame = -2
Query: 104 DRPTKVGLGSKKRGSAPPPIHGIITDPF 131
+RPT G+ S+ R APPP + P+
Sbjct: 404 ERPTATGMSSRTRADAPPPPLQMAATPY 321
>TC212169 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransferase,
partial (19%)
Length = 635
Score = 28.5 bits (62), Expect = 1.3
Identities = 11/28 (39%), Positives = 16/28 (56%)
Frame = -1
Query: 104 DRPTKVGLGSKKRGSAPPPIHGIITDPF 131
+RPT G+ S+ R APPP + P+
Sbjct: 401 ERPTATGMSSRTRADAPPPPLQMAATPY 318
>TC229391 weakly similar to UP|Q00484 (Q00484) Mini-collagen precursor,
partial (30%)
Length = 795
Score = 28.5 bits (62), Expect = 1.3
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Frame = -1
Query: 89 VPPQPNSPPDNVFRPDRPTKVGLGSKKRGS---------APPPI 123
VP P PP+N +P P K+G KK+G PPP+
Sbjct: 318 VPGNPG-PPENPGKPGNPRKLGNPGKKKGKPLLKPKRKPGPPPM 190
>BM954311 weakly similar to GP|21322711|e pherophorin-dz1 protein {Volvox
carteri f. nagariensis}, partial (9%)
Length = 406
Score = 28.1 bits (61), Expect = 1.7
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +2
Query: 90 PPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGIITDPFCRLPLP 137
PP+P SPP RP P + S PPP + P PLP
Sbjct: 233 PPRPFSPPPPKVRPPPPPPRPI----HPSPPPPPRPVRPPPLPPAPLP 364
>TC211031 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (11%)
Length = 678
Score = 28.1 bits (61), Expect = 1.7
Identities = 18/52 (34%), Positives = 24/52 (45%)
Frame = +3
Query: 86 LTDVPPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGIITDPFCRLPLP 137
L+ PP P SPP + P P+ L S + PPP+ + P PLP
Sbjct: 300 LSTPPPLPPSPPPPL--PPSPSPPNLPSPPPLAPPPPLPPLAPPPPPLPPLP 449
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.141 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,781,577
Number of Sequences: 63676
Number of extensions: 136675
Number of successful extensions: 1155
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of query: 153
length of database: 12,639,632
effective HSP length: 89
effective length of query: 64
effective length of database: 6,972,468
effective search space: 446237952
effective search space used: 446237952
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC121240.11