BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121238.1 + phase: 0
(533 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226882 similar to UP|O81316 (O81316) F6N15.20 protein (Scarecr... 562 e-160
TC217781 similar to UP|O81316 (O81316) F6N15.20 protein (Scarecr... 512 e-145
TC226881 similar to UP|O81316 (O81316) F6N15.20 protein (Scarecr... 490 e-139
TC226166 similar to UP|O23724 (O23724) GAI protein, partial (70%) 135 5e-32
TC204219 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial... 115 5e-26
TC228546 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partia... 110 2e-24
TC231611 similar to UP|Q6H4Z9 (Q6H4Z9) Leucine zipper protein-li... 69 3e-23
TC227563 similar to PIR|E96542|E96542 scarecrow-like protein [im... 65 8e-22
TC226165 GAI1 [Glycine max] 99 4e-21
TC228139 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible gibberel... 94 2e-19
TC219179 similar to UP|Q9LDL7 (Q9LDL7) SCARECROW gene regulator-... 92 4e-19
BM107962 similar to GP|7267102|emb| scarecrow-like 6 (SCL6) {Ara... 92 6e-19
TC227564 similar to UP|Q9LDL7 (Q9LDL7) SCARECROW gene regulator-... 91 1e-18
TC209743 similar to PIR|E86347|E86347 scarecrow-like 1 protein F... 86 3e-17
BF068550 weakly similar to GP|7267102|emb| scarecrow-like 6 (SCL... 86 5e-17
TC220762 similar to UP|Q6S5L6 (Q6S5L6) GAI protein, partial (27%) 85 9e-17
TC204215 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin ... 81 7e-16
TC210472 similar to UP|Q9FHZ1 (Q9FHZ1) SCARECROW gene regulator-... 81 1e-15
TC229255 similar to UP|Q7X9T5 (Q7X9T5) SCARECROW-like protein, p... 74 2e-13
BQ296629 similar to GP|17064924|gb SCARECROW gene regulator {Ara... 73 4e-13
>TC226882 similar to UP|O81316 (O81316) F6N15.20 protein (Scarecrow-like 6)
(SCL6) (AT4g00150/F6N15_20), partial (32%)
Length = 1423
Score = 562 bits (1449), Expect = e-160
Identities = 273/331 (82%), Positives = 303/331 (91%)
Frame = +3
Query: 203 QLSPIGNPFQRASFYMKEALQLMLHSNGNNLTAFSPISFIFKIGAYKSFSEISPVLQFAN 262
QLSPIG PFQRA+FYMKEAL +LHSN ++ AFSPISFIFKIGAYKSFSEISPVLQFAN
Sbjct: 3 QLSPIGRPFQRAAFYMKEALMSLLHSNAHSFMAFSPISFIFKIGAYKSFSEISPVLQFAN 182
Query: 263 FTCNQSLIEALERFDRIHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLKITAVVSPSSCNE 322
FTCNQ+LIEA+ER DRIHVIDFDIGFGVQWSSFMQEI LRS+G PSLK+TA+VSPS+C+E
Sbjct: 183 FTCNQALIEAVERSDRIHVIDFDIGFGVQWSSFMQEIALRSSGAPSLKVTAIVSPSTCDE 362
Query: 323 IELNFTQENLSQYAKDLNILFEFNVLNIESLNLPSCPLPGHFFDSNEAIGVNFPVSSFIS 382
+ELNFT+ENL QYAKD+N+ FEFNVL+IESLN PSCPL G FFD NEAI VN PVSSF +
Sbjct: 363 VELNFTRENLIQYAKDINVSFEFNVLSIESLNSPSCPLLGKFFD-NEAIVVNMPVSSFTN 539
Query: 383 NPSCFPVALHFLKQLRPKIVVTLDKNCDRMDVPLPTNVVHVLQCYSALLESLDAVNVNLD 442
PS FP LHF+KQLRPK+VVTLD+ CD+MDVPLPTNVVHVLQCYSALLESLDAVNVNLD
Sbjct: 540 YPSLFPSVLHFVKQLRPKVVVTLDRICDQMDVPLPTNVVHVLQCYSALLESLDAVNVNLD 719
Query: 443 VLQKIERHYIQPTINKIVLSHHNQRDKLPPWRNMFLQSGFSPFSFSNFTEAQAECLVQRA 502
VLQKIERH+IQP I KI+L HH+ ++KLPPWRN+F+QSGFSPF+FSNFTEAQAECLVQRA
Sbjct: 720 VLQKIERHFIQPAIKKIILGHHHFQEKLPPWRNLFMQSGFSPFTFSNFTEAQAECLVQRA 899
Query: 503 PVRGFQVERKPSSLVLCWQRKELISVSTWRC 533
PVRGF VERKPSSLVLCWQ+KELISVSTWRC
Sbjct: 900 PVRGFHVERKPSSLVLCWQKKELISVSTWRC 992
>TC217781 similar to UP|O81316 (O81316) F6N15.20 protein (Scarecrow-like 6)
(SCL6) (AT4g00150/F6N15_20), partial (42%)
Length = 1762
Score = 512 bits (1318), Expect = e-145
Identities = 272/452 (60%), Positives = 332/452 (73%), Gaps = 10/452 (2%)
Frame = +1
Query: 92 QGNYNVFPFIPE-------NYNV--LPLLDSGQEVFARRHQQQETQLPLFPHHYLQHQQQ 142
Q N+ + P P NY V P LDSGQE+ RR QQQ L L PHH LQ
Sbjct: 172 QENHQLLPQPPAKRLNCGPNYQVPKTPFLDSGQELLLRRQQQQ---LQLLPHHLLQ---- 330
Query: 143 QQQSSVVPFAKQQKVSSSTTGDDASIQLQQSIFDQLFKTAELIEAGNPVQAQGILARLNH 202
+ S VV A +QK+ +S + D A+ QLQQ+I +QLFK AELI+AGN A GILARLNH
Sbjct: 331 -RPSMVV--APKQKMVNSGSQDLATHQLQQAITEQLFKAAELIDAGNLELAHGILARLNH 501
Query: 203 QLSPIGNPFQRASFYMKEALQLMLHSNGNNLT-AFSPISFIFKIGAYKSFSEISPVLQFA 261
QLSPIG PFQRA+FY KEALQL+LH N NN + FSP + KIGAYKSFSEISPVLQFA
Sbjct: 502 QLSPIGKPFQRAAFYFKEALQLLLHPNANNSSFTFSPTGLLLKIGAYKSFSEISPVLQFA 681
Query: 262 NFTCNQSLIEALERFDRIHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLKITAVVSPSSCN 321
NFTCNQ+L+EA+E FDRIH+IDFDIG G QWSSFMQE+ LR+ P LKITA VSPS +
Sbjct: 682 NFTCNQALLEAVEGFDRIHIIDFDIGLGGQWSSFMQELALRNGSAPELKITAFVSPSHHD 861
Query: 322 EIELNFTQENLSQYAKDLNILFEFNVLNIESLNLPSCPLPGHFFDSNEAIGVNFPVSSFI 381
EIEL+F+QE+L QYA +L++ FE +L++ESLN S P P EA+ VN P+ SF
Sbjct: 862 EIELSFSQESLKQYAGELHMSFELEILSLESLNSASWPQP---LRDCEAVVVNMPIGSFS 1032
Query: 382 SNPSCFPVALHFLKQLRPKIVVTLDKNCDRMDVPLPTNVVHVLQCYSALLESLDAVNVNL 441
+ PS P+ L F+KQL PKIVVTLD++CDR D P P +++ LQ YS LLESLDAVNV+
Sbjct: 1033NYPSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHLIFALQSYSGLLESLDAVNVHP 1212
Query: 442 DVLQKIERHYIQPTINKIVLSHHNQRDKLPPWRNMFLQSGFSPFSFSNFTEAQAECLVQR 501
DVLQ IE++Y+QP++ K+VL H +++ PW+N+ L SGFSP +FSNFTE+QAECLVQR
Sbjct: 1213DVLQMIEKYYLQPSMEKLVLGRHGLQERALPWKNLLLSSGFSPLTFSNFTESQAECLVQR 1392
Query: 502 APVRGFQVERKPSSLVLCWQRKELISVSTWRC 533
P +GF VE++ SSLVLCWQRK+LISVSTWRC
Sbjct: 1393TPSKGFHVEKRQSSLVLCWQRKDLISVSTWRC 1488
>TC226881 similar to UP|O81316 (O81316) F6N15.20 protein (Scarecrow-like 6)
(SCL6) (AT4g00150/F6N15_20), partial (26%)
Length = 871
Score = 490 bits (1262), Expect = e-139
Identities = 235/286 (82%), Positives = 261/286 (91%)
Frame = +2
Query: 248 YKSFSEISPVLQFANFTCNQSLIEALERFDRIHVIDFDIGFGVQWSSFMQEIVLRSNGKP 307
YKSFSEISPVLQFANFTCNQ+LIEA+ERFDRIHVIDFDIGFGVQWSSFMQE+ LRS+G P
Sbjct: 2 YKSFSEISPVLQFANFTCNQALIEAVERFDRIHVIDFDIGFGVQWSSFMQELALRSSGAP 181
Query: 308 SLKITAVVSPSSCNEIELNFTQENLSQYAKDLNILFEFNVLNIESLNLPSCPLPGHFFDS 367
SLK+TA+VSPS+C+E+ELNFT+ENL QYAKD+N+ FE NV +IESLN SCPL G FFD
Sbjct: 182 SLKVTAIVSPSTCDEVELNFTRENLIQYAKDINVSFELNVFSIESLNSASCPLLGQFFD- 358
Query: 368 NEAIGVNFPVSSFISNPSCFPVALHFLKQLRPKIVVTLDKNCDRMDVPLPTNVVHVLQCY 427
NEAI VN PVSSF + PS FP LHF+KQLRPK+VVTLD+ CDR+DVPLPTNVVHVLQCY
Sbjct: 359 NEAIAVNMPVSSFTNYPSLFPSVLHFVKQLRPKVVVTLDRICDRIDVPLPTNVVHVLQCY 538
Query: 428 SALLESLDAVNVNLDVLQKIERHYIQPTINKIVLSHHNQRDKLPPWRNMFLQSGFSPFSF 487
SALLESLDAVNVNLD LQKIERH+IQP I KI+L HH+ ++KLPPWRN+F+QSGFSPF+F
Sbjct: 539 SALLESLDAVNVNLDALQKIERHFIQPAIKKIILGHHHSQEKLPPWRNLFIQSGFSPFTF 718
Query: 488 SNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWRC 533
SNFTEAQAECLVQRAPVRGF VERKPSSLVLCWQRKELISVSTWRC
Sbjct: 719 SNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQRKELISVSTWRC 856
>TC226166 similar to UP|O23724 (O23724) GAI protein, partial (70%)
Length = 1613
Score = 135 bits (340), Expect = 5e-32
Identities = 93/362 (25%), Positives = 162/362 (44%), Gaps = 7/362 (1%)
Frame = +1
Query: 178 LFKTAELIEAGNPVQAQGILARLNHQLSPIGNPFQRASFYMKEALQLMLHSNGNNLTAFS 237
L AE +E N A+ ++ ++ ++ + Y EAL ++
Sbjct: 124 LMACAEAVENNNLAVAEALVKQIGFLAVSQVGAMRKVAIYFAEALARRIYR-------VF 282
Query: 238 PISFIFKIGAYKSFSEISPVLQFANFTCNQSLIEALERFDRIHVIDFDIGFGVQWSSFMQ 297
P+ F E P L+FA+FT NQ ++EA + +R+HVIDF I G+QW + MQ
Sbjct: 283 PLQHSLSDSLQIHFYETCPYLKFAHFTANQVILEAFQGKNRVHVIDFGINQGMQWPALMQ 462
Query: 298 EIVLRSNGKPSLKITAVVSPSSCNEIELNFTQENLSQYAKDLNILFEFNVLNIESLNLPS 357
+ +R+ G P ++T + P++ N L L+Q A+++N+ FE+ SL
Sbjct: 463 ALAVRTGGPPVFRLTGIGPPAADNSDHLQEVGWKLAQLAEEINVQFEYRGFVANSLADLD 642
Query: 358 CPLPGHFFDSNEAIGVNFPVSSFISNPSCFPVALHFLKQLRPKIVVTLDKNCDRMDVPLP 417
+ D + A+ F ++ P L ++Q+RP+I+ +++ + +
Sbjct: 643 ASMLDLREDESVAVNSVFEFHKLLARPGAVEKVLSVVRQIRPEILTVVEQEANHNGLSFV 822
Query: 418 TNVVHVLQCYSALLESLDA--VNVNLDVLQKIERHYIQPTINKIV----LSHHNQRDKLP 471
L YS L +SL+ VN N + ++ Y+ I +V + + + L
Sbjct: 823 DRFTESLHYYSTLFDSLEGSPVNPNDKAMSEV---YLGKQICNVVACEGMDRVERHETLN 993
Query: 472 PWRNMFLQSGFSPFSFSNFTEAQAECLVQR-APVRGFQVERKPSSLVLCWQRKELISVST 530
WRN F +GFSP + QA L+ G++VE L+L W + LI+ S
Sbjct: 994 QWRNRFGSTGFSPVHLGSNAYKQASMLLSLFGGGDGYRVEENNGCLMLGWHTRPLIATSV 1173
Query: 531 WR 532
W+
Sbjct: 1174WQ 1179
>TC204219 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial (50%)
Length = 1208
Score = 115 bits (288), Expect = 5e-26
Identities = 85/297 (28%), Positives = 137/297 (45%), Gaps = 15/297 (5%)
Frame = +1
Query: 251 FSEISPVLQFANFTCNQSLIEALERFDRIHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLK 310
F E P L+FA+FT NQ+++EA ++HVIDF + G+QW + MQ + LR G P+ +
Sbjct: 16 FYESCPYLKFAHFTANQAILEAFATAGKVHVIDFGLKQGMQWPALMQALALRPGGPPTFR 195
Query: 311 ITAVVSPSSCNEIELNFTQENLSQYAKDLNILFEFNVLNIESL-NLPSCPLPGHFFDSNE 369
+T + P N L L+Q A+++ + FEF SL +L L E
Sbjct: 196 LTGIGPPQPDNTDALQQVGWKLAQLAQNIGVQFEFRGFVCNSLADLDPKMLE---IRPGE 366
Query: 370 AIGVN--FPVSSFISNPSCFPVALHFLKQLRPKIVVTLDKNCDRMDVPLPTNVVHVLQCY 427
A+ VN F + ++ P L +K+++PKIV +++ + L Y
Sbjct: 367 AVAVNSVFELHRMLARPGSVDKVLDTVKKIKPKIVTIVEQEANHNGPGFLDRFTEALHYY 546
Query: 428 SALLESLDAV-------NVNLDVLQKIERHYIQPTINKIVLSHHNQR----DKLPPWRNM 476
S+L +SL+ + N D+L + Y+ I +V + R + L WR
Sbjct: 547 SSLFDSLEGSSSSTGLGSPNQDLL--MSELYLGRQICNVVANEGADRVERHETLSQWRGR 720
Query: 477 FLQSGFSPFSFSNFTEAQAECLVQR-APVRGFQVERKPSSLVLCWQRKELISVSTWR 532
+GF P + QA L+ A G++VE L+L W + LI+ S W+
Sbjct: 721 LDSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWK 891
>TC228546 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial (60%)
Length = 1493
Score = 110 bits (275), Expect = 2e-24
Identities = 94/344 (27%), Positives = 152/344 (43%), Gaps = 18/344 (5%)
Frame = +3
Query: 208 GNPFQRASFYMKEALQLMLHSNGN----NLTAFSPISFIFKIGAYKSFSEISPVLQFANF 263
G+P QR YM E L+ L S+G+ L P S + + +I P +FA
Sbjct: 54 GDPIQRLGAYMLEGLRARLESSGSIIYKALKCEQPTSNDLMTYMHILY-QICPYWKFAYT 230
Query: 264 TCNQSLIEALERFDRIHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLKITAVVSPSSCNEI 323
+ N + EA+ RI +IDF I G QW +Q + R G P + +T V S +
Sbjct: 231 SANAVIGEAMLNESRIRIIDFQIAQGTQWLLLIQALASRPGGPPFVHVTGVDDSQSFHAR 410
Query: 324 --ELNFTQENLSQYAKDLNILFEFNVLNIESLNLPSCPLPGHFFDSNEAIGVNFPV---- 377
L+ + LS YAK + FEF+ + L L EA+ VNFP
Sbjct: 411 GGGLHIVGKRLSDYAKSCGVPFEFHSAAMCGSEL---ELENLVIQPGEALVVNFPFVLHH 581
Query: 378 --SSFISNPSCFPVALHFLKQLRPKIVVTLDKNCDRMDVPLPTNVVHVLQCYSALLESLD 435
+S + L +K L PK+V +++ + P V L Y+A+ ES+D
Sbjct: 582 MPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETLSYYTAMFESID 761
Query: 436 AVNVNLDVLQKI--ERHYIQPTINKIVLSHHNQR----DKLPPWRNMFLQSGFSPFSFSN 489
V + D Q+I E+H + I +V ++R + L WR+ F +GF+P S+
Sbjct: 762 -VALPRDDKQRINAEQHCVARDIVNMVACEGDERLERHELLGKWRSRFSMAGFAPCPLSS 938
Query: 490 FTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWRC 533
A ++ ++++ + +L L W+ + + + S WRC
Sbjct: 939 SVTAAVRNMLNEFN-ENYRLQHRDGALYLGWKSRAMCTSSAWRC 1067
>TC231611 similar to UP|Q6H4Z9 (Q6H4Z9) Leucine zipper protein-like, partial
(3%)
Length = 740
Score = 68.6 bits (166), Expect(2) = 3e-23
Identities = 40/70 (57%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Frame = +3
Query: 89 SVQQGNYNVFPFIPENYNV--LPLLDSGQEVFARRHQQQETQLPLFPHHYLQHQQQQQQS 146
S Q +++F I N+ L LLDSGQEVF RR Q+TQLPLFPHH QQQQQQS
Sbjct: 441 SQHQAKHHLFDTIGHNFQAPRLSLLDSGQEVFGRR---QQTQLPLFPHH--MQQQQQQQS 605
Query: 147 SVVPFAKQQK 156
V+P KQQK
Sbjct: 606 MVMPSTKQQK 635
Score = 58.5 bits (140), Expect(2) = 3e-23
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = +1
Query: 160 STTGDDASIQLQQSIFDQLFKTAELIEAGNPV 191
S+TGDDAS QLQQ+IFDQL+KTAELIEAGNPV
Sbjct: 640 SSTGDDASHQLQQAIFDQLYKTAELIEAGNPV 735
Score = 44.7 bits (104), Expect = 1e-04
Identities = 27/58 (46%), Positives = 38/58 (64%), Gaps = 6/58 (10%)
Frame = +3
Query: 53 NKILQNSGYGSQNVDFHGGFGVLDHQQQQGLTM-MDASVQQGNYNV-----FPFIPEN 104
+K+LQ++ GSQ+ DF+ GFGV+D QQGL M M+ ++ GN + FPFI EN
Sbjct: 3 SKLLQSTACGSQSADFNAGFGVVD---QQGLNMNMNMNMVGGNIDPNYPAGFPFIAEN 167
>TC227563 similar to PIR|E96542|E96542 scarecrow-like protein [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(71%)
Length = 1274
Score = 64.7 bits (156), Expect(2) = 8e-22
Identities = 57/239 (23%), Positives = 99/239 (40%), Gaps = 13/239 (5%)
Frame = +2
Query: 307 PSLKITAVVSPSSCNEIE--LNFTQENLSQYAKDLNILFEFNVLNIESLNLPSCPLPGHF 364
P ++IT +S E L LS+ A+ N+ FEF+ + + L
Sbjct: 452 PKIRITGFDDSTSAYAREGGLEIVGARLSRLAQSYNVPFEFHAIRAAPTEVELKDLA--- 622
Query: 365 FDSNEAIGVNFPVSSFISNPSCFPVALH------FLKQLRPKIVVTLDKNCDRMDVPLPT 418
EAI VNF + C H K L PKIV +++ ++P
Sbjct: 623 LQPGEAIAVNFAMMLHHVPDECVDSRNHRDRLVRLAKCLSPKIVTLVEQESHTNNLPFFP 802
Query: 419 NVVHVLQCYSALLESLD-AVNVNLDVLQKIERHYIQPTINKIVLSHHNQR----DKLPPW 473
V + Y A+ ES+D A+ +E+H + + ++ +R + L W
Sbjct: 803 RFVETMNYYLAIFESIDVALPREHKERINVEQHCLAREVVNLIACEGAERVERHELLKKW 982
Query: 474 RNMFLQSGFSPFSFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWR 532
R+ F +GF+P+ ++F + L Q++ + +E + +L L W + LI+ WR
Sbjct: 983 RSRFTMAGFTPYPLNSFVTCSIKNL-QQSYQGHYTLEERDGALCLGWMNQVLITSCAWR 1156
Score = 57.4 bits (137), Expect(2) = 8e-22
Identities = 36/116 (31%), Positives = 58/116 (49%), Gaps = 6/116 (5%)
Frame = +3
Query: 187 AGNPVQA-QGILARLNHQLSPIGNPFQRASFYMKEALQLMLHSNGNNLTAFSPISFIFKI 245
AGN ++ + +++ L +S GNP QR YM EAL L S+G+ T + +
Sbjct: 78 AGNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVARLASSGS--TIYKVLKCKEPT 251
Query: 246 GA-----YKSFSEISPVLQFANFTCNQSLIEALERFDRIHVIDFDIGFGVQWSSFM 296
G+ EI P L+F + N ++ E ++ +H+IDF I G+QW S +
Sbjct: 252 GSELLSHMHLLYEICPYLKFGYMSANGAIAEVMKEESEVHIIDFQINQGIQWVSLI 419
>TC226165 GAI1 [Glycine max]
Length = 1313
Score = 99.4 bits (246), Expect = 4e-21
Identities = 72/287 (25%), Positives = 130/287 (45%), Gaps = 4/287 (1%)
Frame = +3
Query: 146 SSVVPFAKQQKVSSSTTGDDASIQLQQS---IFDQLFKTAELIEAGNPVQAQGILARLNH 202
S +P K+ + ST + LQ++ + L AE +E N A+ ++ ++
Sbjct: 477 SDALPNPKRVRTDESTRAV-VVVDLQENGIRLVHSLMACAEAVENNNLAVAEALVKQIGF 653
Query: 203 -QLSPIGNPFQRASFYMKEALQLMLHSNGNNLTAFSPISFIFKIGAYKSFSEISPVLQFA 261
LS +G ++ + Y EAL ++ P F E P L+FA
Sbjct: 654 LALSQVG-AMRKVATYFAEALARRIYR-------VFPQQHSLSDSLQIHFYETCPYLKFA 809
Query: 262 NFTCNQSLIEALERFDRIHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLKITAVVSPSSCN 321
+FT NQ+++EA + +R+HVIDF I G+QW + MQ + LR++G P ++T + P++ N
Sbjct: 810 HFTANQAILEAFQGKNRVHVIDFGINQGMQWPALMQALALRNDGPPVFRLTGIGPPAADN 989
Query: 322 EIELNFTQENLSQYAKDLNILFEFNVLNIESLNLPSCPLPGHFFDSNEAIGVNFPVSSFI 381
L L+Q A+ +++ FE+ SL + D + A+ F +
Sbjct: 990 SDHLQEVGWKLAQLAERIHVQFEYRGFVANSLADLDASMLDLREDESVAVNSVFEFHKLL 1169
Query: 382 SNPSCFPVALHFLKQLRPKIVVTLDKNCDRMDVPLPTNVVHVLQCYS 428
+ P L ++Q+RP+I+ +++ + + L YS
Sbjct: 1170ARPGAVEKVLSVVRQIRPEILTVVEQEANHNGLSFVDRFTESLHYYS 1310
>TC228139 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible
gibberellin-responsive protein, partial (47%)
Length = 1497
Score = 93.6 bits (231), Expect = 2e-19
Identities = 72/292 (24%), Positives = 127/292 (42%), Gaps = 16/292 (5%)
Frame = +1
Query: 258 LQFANFTCNQSLIEALERFDRIHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLKITAVVSP 317
L+F N ++ +A D IH+IDF I G QW + +Q + R G P ++IT + P
Sbjct: 7 LKFGYMAANGAIAQACRNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDP 186
Query: 318 SS--CNEIELNFTQENLSQYAKDLNILFEFNVLNIESLNLPSCPLPGHFFDSNEAIGVNF 375
S L + L+ ++ I EF+ + + + N+ L EA+ VNF
Sbjct: 187 VSKYARGDGLEVVGKRLALMSEKFGIPVEFHGVPVFAPNVTREMLD---IRPGEALAVNF 357
Query: 376 PV--------SSFISNPSCFPVALHFLKQLRPKIVVTLDKNCDRMDVPLPTNVVHVLQCY 427
P+ S +SNP L ++ L PK+ +++ + P + L Y
Sbjct: 358 PLQLHHTADESVHVSNPR--DGLLRLVRSLSPKVTTLVEQESNTNTTPFFNRFIETLDYY 531
Query: 428 SALLESLDAVNVNLDVLQKI--ERHYIQPTINKIVLSHHNQR----DKLPPWRNMFLQSG 481
A+ ES+D V + D ++I E+H + I I+ +R + W++ +G
Sbjct: 532 LAIFESID-VTLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLKMAG 708
Query: 482 FSPFSFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWRC 533
F S++ + L+ + + K +++L W+ + LIS S W C
Sbjct: 709 FQQCPLSSYVNSVIRSLLM-CYSEHYTLVEKDGAMLLGWKDRNLISASAWHC 861
>TC219179 similar to UP|Q9LDL7 (Q9LDL7) SCARECROW gene regulator-like
(Phytochrome A signal transduction 1 protein), partial
(52%)
Length = 1025
Score = 92.4 bits (228), Expect = 4e-19
Identities = 65/267 (24%), Positives = 123/267 (45%), Gaps = 11/267 (4%)
Frame = +3
Query: 277 DRIHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLKITAVVSPSS--CNEIELNFTQENLSQ 334
DR+H+IDF IG G QW + +Q R G P ++IT + +S L+ LS+
Sbjct: 9 DRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAYARGGGLHIVGRRLSK 188
Query: 335 YAKDLNILFEFNVLNIESLNLPSCPL---PGHFFDSNEAIGVNFPVSSFISNPSCFPVAL 391
A+ + FEF+ I ++ L PG N A ++ +S + L
Sbjct: 189 LAEHFKVPFEFHAAAISGFDVQLHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLL 368
Query: 392 HFLKQLRPKIVVTLDKNCDRMDVPLPTNVVHVLQCYSALLESLDAVNVNLDVLQKI--ER 449
++ L PK+V +++ + + L Y+A+ ES+D V + + ++I E+
Sbjct: 369 RLVRSLSPKVVTLVEQESNTNTAAFFPRFLETLNYYTAMFESID-VTLPREHKERINVEQ 545
Query: 450 HYIQPTINKIVLSHHNQR----DKLPPWRNMFLQSGFSPFSFSNFTEAQAECLVQRAPVR 505
H + + I+ +R + L WR+ F +GF+P+ S+ + L++ R
Sbjct: 546 HCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSDR 725
Query: 506 GFQVERKPSSLVLCWQRKELISVSTWR 532
+++E + +L L W ++L++ W+
Sbjct: 726 -YRLEERDGALYLGWMNRDLVASCAWK 803
>BM107962 similar to GP|7267102|emb| scarecrow-like 6 (SCL6) {Arabidopsis
thaliana}, partial (5%)
Length = 676
Score = 92.0 bits (227), Expect = 6e-19
Identities = 48/94 (51%), Positives = 63/94 (66%), Gaps = 3/94 (3%)
Frame = +3
Query: 14 DNSEEKCGGGGMRMEDWEGQDQSLLRLIMGDVEDPSAGLNKILQNSGYGSQNVDFHGGFG 73
++S EKCG +RMEDW QDQS+LRLIMGDVEBPSAGL+K+LQ++ GSQ+ DF+ GFG
Sbjct: 213 ESSPEKCG---IRMEDWXCQDQSILRLIMGDVEBPSAGLSKLLQSTACGSQSADFNAGFG 383
Query: 74 VLDHQ---QQQGLTMMDASVQQGNYNVFPFIPEN 104
V+D Q + M+ ++ FPFI N
Sbjct: 384 VVDXQGLNMNMNMNMVGGNIDPNYPAGFPFIAXN 485
>TC227564 similar to UP|Q9LDL7 (Q9LDL7) SCARECROW gene regulator-like
(Phytochrome A signal transduction 1 protein), partial
(53%)
Length = 1107
Score = 91.3 bits (225), Expect = 1e-18
Identities = 66/267 (24%), Positives = 120/267 (44%), Gaps = 13/267 (4%)
Frame = +3
Query: 279 IHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLKITAVVSPSS--CNEIELNFTQENLSQYA 336
+H++DF IG G QW S +Q + R G P ++I+ V S L+ + LS A
Sbjct: 6 VHIVDFQIGQGTQWVSLIQALARRPVGPPKIRISGVDDSYSAYARRGGLDIVGKRLSALA 185
Query: 337 KDLNILFEFNVLNIESLNLPSCPLPGHFFDSNEAIGVNFPVS------SFISNPSCFPVA 390
+ ++ FEFN + + + L EA+ VNF +S +++ +
Sbjct: 186 QSCHVPFEFNAVRVP---VTEVQLEDLELRPYEAVAVNFAISLHHVPDESVNSHNHRDRL 356
Query: 391 LHFLKQLRPKIVVTLDKNCDRMDVPLPTNVVHVLQCYSALLESLDAVNVNLDVLQ-KIER 449
L KQL PK+V +++ + P V + Y A+ ES+D V + +E+
Sbjct: 357 LRLAKQLSPKVVTLVEQEFSTNNAPFLQRFVETMNYYLAVFESIDTVLPREHKERINVEQ 536
Query: 450 HYIQPTINKIVLSHHNQR----DKLPPWRNMFLQSGFSPFSFSNFTEAQAECLVQRAPVR 505
H + + ++ +R + L WR F ++GF+P+ S+ + + L+Q
Sbjct: 537 HCLAREVVNLIACEGEERVERHELLNKWRMRFTKAGFTPYPLSSVINSSIKDLLQSYHGH 716
Query: 506 GFQVERKPSSLVLCWQRKELISVSTWR 532
+ +E + +L L W + L++ WR
Sbjct: 717 -YTLEERDGALFLGWMNQVLVASCAWR 794
>TC209743 similar to PIR|E86347|E86347 scarecrow-like 1 protein F24J8.8 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(47%)
Length = 1078
Score = 86.3 bits (212), Expect = 3e-17
Identities = 66/277 (23%), Positives = 116/277 (41%), Gaps = 10/277 (3%)
Frame = +1
Query: 266 NQSLIEALERFDRIHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLKITAVVSPSSCNEI-- 323
N ++ E + ++H+IDFDI G Q+ + +Q + P +++TAV P S
Sbjct: 16 NGAIAEVVRDEKKVHIIDFDISQGTQYITLIQTLASMPGRPPHVRLTAVDDPESVQRSIG 195
Query: 324 ELNFTQENLSQYAKDLNILFEFNVLNIESLNLPSCPL---PGHFFDSNEAIGVNFPVSSF 380
+N + L + A++L + FEF + + N+ L PG N A ++
Sbjct: 196 GINIIGQRLEKLAEELRLPFEFRAVASRTSNVTQSMLNCRPGEALVVNFAFQLHHMRDET 375
Query: 381 ISNPSCFPVALHFLKQLRPKIVVTLDKNCDRMDVPLPTNVVHVLQCYSALLESLDA-VNV 439
+S + L +K L PKIV ++++ + P + YSA+ +LDA +
Sbjct: 376 VSTVNERDQLLRMVKSLNPKIVTVVEQDMNTNTSPFLPRFIETYNYYSAVFNTLDATLPR 555
Query: 440 NLDVLQKIERHYIQPTINKIVLSHHNQR----DKLPPWRNMFLQSGFSPFSFSNFTEAQA 495
+ER + I IV +R + WR +GF+P S
Sbjct: 556 ESQDRMNVERQCLAKDIVNIVACEGEERIERYEVAGKWRARLSMAGFTPSPMSTNVREAI 735
Query: 496 ECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWR 532
L+ + F+++ + L W+ K LI S W+
Sbjct: 736 RNLIIKQYCDKFKIKEEMGGLHFGWEDKNLIVASAWK 846
>BF068550 weakly similar to GP|7267102|emb| scarecrow-like 6 (SCL6)
{Arabidopsis thaliana}, partial (9%)
Length = 241
Score = 85.5 bits (210), Expect = 5e-17
Identities = 44/78 (56%), Positives = 54/78 (68%)
Frame = +2
Query: 255 SPVLQFANFTCNQSLIEALERFDRIHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLKITAV 314
SP L FANFT QSL+E+++ DRIH+IDF I QWSSFM E+ LR+ P ITA
Sbjct: 2 SPALPFANFTWYQSLLESVDWLDRIHIIDFVI*LDGQWSSFMHELSLRNGSAPDRNITAF 181
Query: 315 VSPSSCNEIELNFTQENL 332
VSPS +EIEL+F+ E L
Sbjct: 182 VSPSHHDEIELSFSHERL 235
>TC220762 similar to UP|Q6S5L6 (Q6S5L6) GAI protein, partial (27%)
Length = 725
Score = 84.7 bits (208), Expect = 9e-17
Identities = 59/189 (31%), Positives = 101/189 (53%), Gaps = 4/189 (2%)
Frame = +1
Query: 161 TTGDDASIQLQQSIFD--QLFKTAELIEAGNPVQ-AQGILARLNHQLSPIGNPFQRASFY 217
T +D+ I+L ++ + +L AG+ ++ QG+LA +N + IG + + Y
Sbjct: 19 TMEEDSGIRLVHTLMTCADSVQRGDLAFAGSLIENMQGLLAHVNTNIG-IG----KVAGY 183
Query: 218 MKEALQLMLHSNGNNLTAFSPISFIFKIGA-YKSFSEISPVLQFANFTCNQSLIEALERF 276
+AL+ + G T S S+ ++ Y + E P L+FA+FT NQ+++EA
Sbjct: 184 FIDALRRRILGQGVFQT-LSSSSYPYEDNVLYHHYYEACPYLKFAHFTANQAILEAFNGH 360
Query: 277 DRIHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLKITAVVSPSSCNEIELNFTQENLSQYA 336
D +HVIDF++ G+QW + +Q + LR G P L++T + PSS N L L++ A
Sbjct: 361 DCVHVIDFNLMQGLQWPALIQALALRPGGPPLLRLTGIGPPSSDNRDTLREIGLRLAELA 540
Query: 337 KDLNILFEF 345
+ +N+ F F
Sbjct: 541 RSVNVRFAF 567
>TC204215 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin response
modulator, partial (45%)
Length = 1589
Score = 81.3 bits (199), Expect(2) = 7e-16
Identities = 50/176 (28%), Positives = 84/176 (47%)
Frame = +1
Query: 178 LFKTAELIEAGNPVQAQGILARLNHQLSPIGNPFQRASFYMKEALQLMLHSNGNNLTAFS 237
L AE ++ N A ++ + + ++ + Y +AL ++ T S
Sbjct: 745 LLACAEAVQQENLKLADALVKHVGILAASQAGAMRKVASYFAQALARRIYGIFPEETLDS 924
Query: 238 PISFIFKIGAYKSFSEISPVLQFANFTCNQSLIEALERFDRIHVIDFDIGFGVQWSSFMQ 297
S + + Y+S P L+FA+FT NQ+++EA R+HVIDF + G+QW + MQ
Sbjct: 925 SFSDVLHMHFYES----CPYLKFAHFTANQAILEAFATAGRVHVIDFGLRQGMQWPALMQ 1092
Query: 298 EIVLRSNGKPSLKITAVVSPSSCNEIELNFTQENLSQYAKDLNILFEFNVLNIESL 353
+ LR G P+ ++T + P N L L+Q A+++ + FEF SL
Sbjct: 1093ALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAQNIGVQFEFRGFVCNSL 1260
Score = 20.8 bits (42), Expect(2) = 7e-16
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 123 QQQETQLPLFPHHYLQHQQQQQQSS 147
QQQ+ Q P + QHQQ Q S
Sbjct: 582 QQQQQQQPRRNRNS*QHQQASQAIS 656
>TC210472 similar to UP|Q9FHZ1 (Q9FHZ1) SCARECROW gene regulator-like
protein, partial (44%)
Length = 751
Score = 80.9 bits (198), Expect = 1e-15
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 10/193 (5%)
Frame = +1
Query: 163 GDDASIQLQQSIFDQLFKTAELIEAGNPVQAQGILARLNHQLSPIGNPFQRASFYMKEAL 222
GD ++L L + AE + N A +L + SP G +R Y +AL
Sbjct: 172 GDSTGLKL----LGLLLQCAECVAMDNLDFANDLLPEIAELSSPYGTSPERVGAYFAQAL 339
Query: 223 QLMLHSNGNNLTAFSPISF----------IFKIGAYKSFSEISPVLQFANFTCNQSLIEA 272
Q + S+ + ++SP++ IF A++S++ +SP+++F++FT NQ++ +A
Sbjct: 340 QARVVSSC--IGSYSPLTAKSVTLTQSQKIFN--AFQSYNSVSPLVKFSHFTANQAIFQA 507
Query: 273 LERFDRIHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLKITAVVSPSSCNEIELNFTQENL 332
L+ DR+H+ID DI G+QW + RS S++IT S S L+ T L
Sbjct: 508 LDGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSVRITGFGSSSEL----LDSTGRRL 675
Query: 333 SQYAKDLNILFEF 345
+ A L + FEF
Sbjct: 676 ADXASSLGLPFEF 714
>TC229255 similar to UP|Q7X9T5 (Q7X9T5) SCARECROW-like protein, partial (37%)
Length = 1561
Score = 73.6 bits (179), Expect = 2e-13
Identities = 41/158 (25%), Positives = 73/158 (45%), Gaps = 2/158 (1%)
Frame = +1
Query: 193 AQGILARLNHQLSPIGNPFQRASFYMKEALQLMLHSNGNNLTAFSPISFIFKIGAYKSFS 252
A +L+++ S G+ QR + Y LQ L + + T + + AYK +
Sbjct: 28 ANDLLSQIRQHSSAFGDGLQRLAHYFANGLQTRLAAGTPSYTPLEGTTSADMLKAYKLYV 207
Query: 253 EISPVLQFANFTCNQSLIEALERFDRIHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLKIT 312
SP+ + N+ ++++ +E +H+IDF I +G QW ++++ R G P L+IT
Sbjct: 208 TSSPLQRLTNYLATKTIVSLVENEGSVHIIDFGICYGFQWPCLIKKLSERHGGPPRLRIT 387
Query: 313 AV--VSPSSCNEIELNFTQENLSQYAKDLNILFEFNVL 348
+ P + T L+ Y K + FE+N L
Sbjct: 388 GIELPQPGFRPAERVEETGRRLANYCKKFKVPFEYNCL 501
>BQ296629 similar to GP|17064924|gb SCARECROW gene regulator {Arabidopsis
thaliana}, partial (19%)
Length = 437
Score = 72.8 bits (177), Expect = 4e-13
Identities = 47/144 (32%), Positives = 75/144 (51%), Gaps = 6/144 (4%)
Frame = +1
Query: 206 PIGNPFQRASFYMKEALQLMLHSNGNNLTAFSPISFIFKIGAYKSFSEISPVLQFANFTC 265
P P +R FY +AL + + + P S+ +YK+ ++ P +FA+ T
Sbjct: 7 PARKPPERVGFYFWQALSRKMWGDKEKM---EPSSWEELTLSYKALNDACPYSKFAHLTA 177
Query: 266 NQSLIEALERFDRIHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLKIT----AVVSPSSCN 321
NQ+++EA E IH++DF I G+QW++ +Q R++GKP+ KIT VS
Sbjct: 178 NQAILEATENASNIHILDFGIVQGIQWAALLQAFATRASGKPN-KITISGIPAVSLGPSP 354
Query: 322 EIELNFTQENLSQYAK--DLNILF 343
L+ T LS +A+ DLN +F
Sbjct: 355 GPSLSATGNRLSDFARLLDLNFVF 426
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,181,061
Number of Sequences: 63676
Number of extensions: 347059
Number of successful extensions: 2470
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 2242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2369
length of query: 533
length of database: 12,639,632
effective HSP length: 102
effective length of query: 431
effective length of database: 6,144,680
effective search space: 2648357080
effective search space used: 2648357080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC121238.1