BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121237.2 - phase: 0
(463 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205977 similar to UP|Q84LI7 (Q84LI7) Polygalacturonase-like pr... 657 0.0
TC217817 similar to UP|Q84LI7 (Q84LI7) Polygalacturonase-like pr... 653 0.0
TC206561 402 e-112
TC217917 similar to UP|Q9M1L0 (Q9M1L0) Polygalacturonase-like pr... 297 6e-81
TC218721 similar to UP|Q9FJ27 (Q9FJ27) Polygalacturonase-like pr... 211 9e-69
TC209841 251 5e-67
TC223982 similar to UP|Q84LI7 (Q84LI7) Polygalacturonase-like pr... 249 2e-66
TC218204 similar to UP|Q9FJ27 (Q9FJ27) Polygalacturonase-like pr... 238 4e-63
TC205976 similar to UP|Q84LI7 (Q84LI7) Polygalacturonase-like pr... 221 7e-58
TC207014 weakly similar to UP|Q8LAH2 (Q8LAH2) Polygalacturonase-... 173 1e-43
BE801009 164 6e-41
TC209699 120 1e-37
BU545459 151 5e-37
CA784537 150 1e-36
TC221723 similar to UP|Q84LI7 (Q84LI7) Polygalacturonase-like pr... 88 2e-33
CD395775 131 7e-31
TC233934 weakly similar to UP|Q8LAH2 (Q8LAH2) Polygalacturonase-... 118 6e-27
CA853125 similar to GP|11762132|gb| AT3g62110 {Arabidopsis thali... 107 1e-23
BU765101 106 2e-23
NP004759 polygalacturonase PG1 104 7e-23
>TC205977 similar to UP|Q84LI7 (Q84LI7) Polygalacturonase-like protein,
partial (88%)
Length = 1966
Score = 657 bits (1695), Expect = 0.0
Identities = 307/442 (69%), Positives = 369/442 (83%), Gaps = 4/442 (0%)
Frame = +3
Query: 25 LNNFDYPAINCRKHSAVLTDFGAVGDGKTLNTKAFNAAITNLSQYANDGGAQLIVPPGKW 84
L+ F+Y A++CR +SA L +FG VGDG TLNTKAF AAI NLSQYA GG+QL VPPGKW
Sbjct: 345 LDYFEYCAMSCRAYSASLEEFGGVGDGTTLNTKAFQAAIENLSQYAASGGSQLYVPPGKW 524
Query: 85 LTGSFNLTSHFTLFLQKDAVILGSQDESEWPQLLVLPSYGRGRDAPAGRFSSLIFGTNLT 144
LTGSFNLTSHFTLFL KDAVIL SQDE++WP + LPSYGRGRD GRFSSLIFGTNLT
Sbjct: 525 LTGSFNLTSHFTLFLHKDAVILASQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLT 704
Query: 145 DVIITGDNGTIDGQGSYWWDKFHKKQLTLTRPYMIEIMYSDQIQISNLTLINSPTWFVHP 204
DVIITGDNGTIDGQG WW KFHK +L TRPY+IEIMYSD +QISNLTL+NSP+W VHP
Sbjct: 705 DVIITGDNGTIDGQGDLWWQKFHKGELKYTRPYLIEIMYSDNVQISNLTLVNSPSWNVHP 884
Query: 205 IYSSNIIINGLTILAPVDSPNTDGINPDSCTNVRIEDNFIVSGDDCIAIKSGWDEYGIKV 264
IYSSN+++ G+TILAPV SPNTDGINPDSCTN RIED +IVSGDDC+A+KSGWDEYGI
Sbjct: 885 IYSSNLVVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAY 1064
Query: 265 GMPSQQIIIRRLTCISPDSAMVALGSEMSGGIQDVRIEDVTAINTESAIRIKSAVGRGAF 324
GMP++Q++IRRLTCISP SA++ALGSEMSGGIQDVR ED+ AIN+ES +RIK+AVGRG +
Sbjct: 1065GMPTKQLVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIVAINSESGVRIKTAVGRGGY 1244
Query: 325 VKDIFVKGMDLNTMKYVFWMTGSYGDHPDNGFDPNALPKISGINYRDVTAKNVTIAGKLE 384
VKDIFV+ M + TMK+ FWMTG+YG H D+ +DPNALP I INYRD+ A+NVT+A +LE
Sbjct: 1245VKDIFVRRMTMKTMKWAFWMTGNYGSHADDNYDPNALPVIQNINYRDMVAENVTMAARLE 1424
Query: 385 GISNDPFTGICVSNVTIEMSAHKKKLPWNCTDISGVTSNVVPKPCELL----QEKEIECP 440
GIS DPFTGIC+SNVTI+++ KK+PW CTDI+G++S+V P PC LL +EK C
Sbjct: 1425GISGDPFTGICISNVTIQLAKKAKKVPWTCTDIAGISSDVTPAPCGLLPDQGEEKIGACT 1604
Query: 441 FPTDKLAIENVQFKTCNFQSSV 462
FP + L IE+++ +TC ++ ++
Sbjct: 1605FPEESLPIEDIKVQTCTYRRNL 1670
>TC217817 similar to UP|Q84LI7 (Q84LI7) Polygalacturonase-like protein,
partial (92%)
Length = 1694
Score = 653 bits (1684), Expect = 0.0
Identities = 314/463 (67%), Positives = 372/463 (79%), Gaps = 7/463 (1%)
Frame = +1
Query: 1 VIGVISVVLILGSLAECRVPS---SIKLNNFDYPAINCRKHSAVLTDFGAVGDGKTLNTK 57
VI +L++ L+ RV S + + +Y AINCR HSA LTDFG VGDGKT NTK
Sbjct: 76 VIRTFFAILLVALLSSERVESRKAKVVTTSLEYNAINCRAHSAALTDFGGVGDGKTSNTK 255
Query: 58 AFNAAITNLSQYANDGGAQLIVPPGKWLTGSFNLTSHFTLFLQKDAVILGSQDESEWPQL 117
AF +AI++LSQYA++GG+QL VP GKWLTGSF+LTSHFTL+L KDAV+L SQD +EWP L
Sbjct: 256 AFQSAISHLSQYASEGGSQLYVPAGKWLTGSFSLTSHFTLYLDKDAVLLASQDITEWPVL 435
Query: 118 LVLPSYGRGRDAPAGRFSSLIFGTNLTDVIITGDNGTIDGQGSYWWDKFHKKQLTLTRPY 177
LPSYGRGRDAPAGRF+SLIFGTNLTDVI+TG+NGTIDGQG +WW +FH+K+L TRPY
Sbjct: 436 EPLPSYGRGRDAPAGRFTSLIFGTNLTDVIVTGENGTIDGQGEFWWQQFHRKKLKYTRPY 615
Query: 178 MIEIMYSDQIQISNLTLINSPTWFVHPIYSSNIIINGLTILAPVDSPNTDGINPDSCTNV 237
+IE M+SD IQISNLTL+NSP+W VHP+YSSNII+ G+TI APV SPNTDGINPDSCTNV
Sbjct: 616 LIE*MFSDNIQISNLTLLNSPSWNVHPVYSSNIIVQGITIYAPVTSPNTDGINPDSCTNV 795
Query: 238 RIEDNFIVSGDDCIAIKSGWDEYGIKVGMPSQQIIIRRLTCISPDSAMVALGSEMSGGIQ 297
RIED +IVSGDDC+A+KSGWDEYGIK G P++Q++IRRLTCISP SA +ALGSEMSGGIQ
Sbjct: 796 RIEDCYIVSGDDCVAVKSGWDEYGIKFGWPTKQLVIRRLTCISPYSATIALGSEMSGGIQ 975
Query: 298 DVRIEDVTAINTESAIRIKSAVGRGAFVKDIFVKGMDLNTMKYVFWMTGSYGDHPDNGFD 357
DVR ED+TAI TES +RIK+AVGRG +VKDI+VK M L+TMK+ F MTG Y H D +D
Sbjct: 976 DVRAEDITAIQTESGVRIKTAVGRGGYVKDIYVKRMTLHTMKWAFKMTGDYNSHADGHYD 1155
Query: 358 PNALPKISGINYRDVTAKNVTIAGKLEGISNDPFTGICVSNVTIEMSAHKKKLPWNCTDI 417
PNALP+I INYRDV A+NVTIA + +GISNDPFTGIC++NVT+ M+A KK PW CTDI
Sbjct: 1156PNALPEIKNINYRDVVAENVTIAARFQGISNDPFTGICIANVTLRMAAKAKKQPWTCTDI 1335
Query: 418 SGVTSNVVPKPCELL----QEKEIECPFPTDKLAIENVQFKTC 456
G+TS V P PC LL EK C FP D L I+ V+ K C
Sbjct: 1336EGMTSGVTPPPCGLLPDQGPEKITACDFPADNLPIDIVELKKC 1464
>TC206561
Length = 1637
Score = 402 bits (1033), Expect = e-112
Identities = 195/398 (48%), Positives = 258/398 (63%)
Frame = +1
Query: 36 RKHSAVLTDFGAVGDGKTLNTKAFNAAITNLSQYANDGGAQLIVPPGKWLTGSFNLTSHF 95
R HS + +FGAVGDGKTLNT AF A+ +A+ GGA+L VP GKWLTGSFNLTSH
Sbjct: 31 RPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAKLYVPSGKWLTGSFNLTSHL 210
Query: 96 TLFLQKDAVILGSQDESEWPQLLVLPSYGRGRDAPAGRFSSLIFGTNLTDVIITGDNGTI 155
TLFL++ A I+ SQD + W + LPSYGRG D P GR+ SLI+G NL+DV+ITGDNG I
Sbjct: 211 TLFLERGATIIASQDYAHWTAMDPLPSYGRGIDVPVGRYRSLIYGQNLSDVVITGDNGII 390
Query: 156 DGQGSYWWDKFHKKQLTLTRPYMIEIMYSDQIQISNLTLINSPTWFVHPIYSSNIIINGL 215
DGQGS WWD L +RP++IE++ SD I ISNLT +NSP W +HP+Y SN+ I +
Sbjct: 391 DGQGSVWWDLISTHSLNYSRPHIIELVGSDNITISNLTFLNSPAWSIHPVYCSNVQIQKI 570
Query: 216 TILAPVDSPNTDGINPDSCTNVRIEDNFIVSGDDCIAIKSGWDEYGIKVGMPSQQIIIRR 275
T+ AP P T GI PDS +V I++ I +G D I +KSGWDEYG+ G P+ + IR
Sbjct: 571 TVQAPTKFPYTSGIVPDSSEHVCIDNCNISTGHDAIVLKSGWDEYGVAYGKPTSNVHIRG 750
Query: 276 LTCISPDSAMVALGSEMSGGIQDVRIEDVTAINTESAIRIKSAVGRGAFVKDIFVKGMDL 335
+ S A +A GSEMSGGI D+ E + N+ I +K+ GRG ++K+IF+ L
Sbjct: 751 VYLQSSSGAGLAFGSEMSGGISDIIAEQLHITNSTFGIELKTTRGRGGYMKNIFISDAKL 930
Query: 336 NTMKYVFWMTGSYGDHPDNGFDPNALPKISGINYRDVTAKNVTIAGKLEGISNDPFTGIC 395
+ MTGS G HPD+ +DPNA+P + + + +V N+ IAG GI + PFT IC
Sbjct: 931 ENIYLGISMTGSSGSHPDDKYDPNAVPDVGNVTFENVIGANIAIAGNFSGIVDSPFTPIC 1110
Query: 396 VSNVTIEMSAHKKKLPWNCTDISGVTSNVVPKPCELLQ 433
+SNVT S+ W C+++ G++ V P+PC LQ
Sbjct: 1111LSNVTFSTSSESSP-SWFCSNVMGISKEVFPEPCPDLQ 1221
>TC217917 similar to UP|Q9M1L0 (Q9M1L0) Polygalacturonase-like protein
(AT3g42950/F18P9_110), partial (74%)
Length = 1292
Score = 297 bits (761), Expect = 6e-81
Identities = 151/336 (44%), Positives = 216/336 (63%), Gaps = 2/336 (0%)
Frame = +2
Query: 99 LQKDAVILGSQDESEWPQLLVLPSYGRGRDAPAGRFSSLIFGTNLTDVIITGDNGTIDGQ 158
L +DAVILG DE WP + LPSYG GR+ P R+ SLI G +L DV+ITG NGTI+GQ
Sbjct: 11 LAEDAVILGIDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQHLKDVVITGHNGTINGQ 190
Query: 159 GSYWWDKFHKKQLTLTRPYMIEIMYSDQIQISNLTLINSPTWFVHPIYSSNIIINGLTIL 218
G WW K+ +K+L TR +++IM+S I I+N+TL +SP W +HP NI I G+TIL
Sbjct: 191 GQTWWKKYRQKRLNHTRGPLVQIMFSSDIVITNITLRDSPFWTLHPYDCKNITIKGVTIL 370
Query: 219 APV-DSPNTDGINPDSCTNVRIEDNFIVSGDDCIAIKSGWDEYGIKVGMPSQQIIIRRLT 277
APV +PNTDGI+PDSC ++ IED +I GDD IAIKSGWD+YGI G PS I+IR L
Sbjct: 371 APVFGAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLV 550
Query: 278 CISPDSAMVALGSEMSGGIQDVRIEDVTAINTESAIRIKSAVGRGAFVKDIFVKGMDLNT 337
S SA +++GSEMSGG+ +V +E++ ++ +RIK+A GRGA+V+ I + +
Sbjct: 551 VRSMVSAGISIGSEMSGGVSNVTVENILIWDSRRGVRIKTARGRGAYVRQITYRNITFEN 730
Query: 338 MKYVFWMTGSYGDHPDNGFDPNALPKISGINYRDVTAKNVTIAGKLEGISNDPFTGICVS 397
++ M Y +HPD+G+DP ALP + I++ V + V + ++ G P +
Sbjct: 731 VRVGIVMKTDYNEHPDDGYDPMALPILRDISFTTVHGQGVRVPVRIHGSEEIPVRNVTFQ 910
Query: 398 NVTIEMSAHKKKLPWNCTDISG-VTSNVVPKPCELL 432
++++ ++ +KKK + C + G V + P PCE L
Sbjct: 911 DMSVGLT-YKKKHIFQCAFVQGRVIGTIYPAPCENL 1015
>TC218721 similar to UP|Q9FJ27 (Q9FJ27) Polygalacturonase-like protein,
partial (53%)
Length = 1128
Score = 211 bits (538), Expect(2) = 9e-69
Identities = 103/234 (44%), Positives = 146/234 (62%)
Frame = +3
Query: 203 HPIYSSNIIINGLTILAPVDSPNTDGINPDSCTNVRIEDNFIVSGDDCIAIKSGWDEYGI 262
H + SN+++ +TILAP DSPNTDGI+PDS +NV IED++I +GDD +A+KSGWDEYGI
Sbjct: 207 HQDFKSNVVVRYVTILAPRDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGI 386
Query: 263 KVGMPSQQIIIRRLTCISPDSAMVALGSEMSGGIQDVRIEDVTAINTESAIRIKSAVGRG 322
G PS I IRR+T SP A +A+GSE SGG+++V E + N I IK+ GRG
Sbjct: 387 AYGRPSSDITIRRITGSSP-FAGIAIGSETSGGVENVLAEHINLYNMGIGIHIKTNTGRG 563
Query: 323 AFVKDIFVKGMDLNTMKYVFWMTGSYGDHPDNGFDPNALPKISGINYRDVTAKNVTIAGK 382
F+K+I + + + + ++G GDHPD+ FD NALP + G+ ++V V AG
Sbjct: 564 GFIKNITMSHVYMEEARKGIRISGDVGDHPDDKFDANALPLVKGVTIKNVWGMKVLQAGL 743
Query: 383 LEGISNDPFTGICVSNVTIEMSAHKKKLPWNCTDISGVTSNVVPKPCELLQEKE 436
++G+ N PFT IC ++ + + PW C+D+SG V P PC L +
Sbjct: 744 IQGLRNSPFTDICQYDINLHGVTGPRTPPWKCSDVSGFAHQVSPWPCSELSSNQ 905
Score = 67.4 bits (163), Expect(2) = 9e-69
Identities = 31/68 (45%), Positives = 43/68 (62%)
Frame = +1
Query: 144 TDVIITGDNGTIDGQGSYWWDKFHKKQLTLTRPYMIEIMYSDQIQISNLTLINSPTWFVH 203
T I G+NGTIDGQG WW+K+ ++ L TRP ++E + S I ISN+ +SP W +H
Sbjct: 7 TTHIFIGENGTIDGQGDEWWNKWKQRTLQFTRPNLVEFVNSRDIIISNVIFKSSPFWNIH 186
Query: 204 PIYSSNII 211
P S +I
Sbjct: 187 PYRSI*VI 210
>TC209841
Length = 1087
Score = 251 bits (641), Expect = 5e-67
Identities = 123/249 (49%), Positives = 170/249 (67%)
Frame = +1
Query: 187 IQISNLTLINSPTWFVHPIYSSNIIINGLTILAPVDSPNTDGINPDSCTNVRIEDNFIVS 246
+ ISN+T +NSP W +HP+Y S++ I +TI+AP+ SPNTDGINPDS NV IED +I +
Sbjct: 13 VLISNVTFMNSPFWTIHPVYCSHVTIQNVTIIAPLSSPNTDGINPDSSDNVCIEDCYIST 192
Query: 247 GDDCIAIKSGWDEYGIKVGMPSQQIIIRRLTCISPDSAMVALGSEMSGGIQDVRIEDVTA 306
GDD I+IKSGWD YGI G PS I IRRL SA +A+GSEMSGG+ +V ED+
Sbjct: 193 GDDLISIKSGWDGYGILFGRPSTNINIRRLIG-KTTSAGIAIGSEMSGGVSEVHAEDIYI 369
Query: 307 INTESAIRIKSAVGRGAFVKDIFVKGMDLNTMKYVFWMTGSYGDHPDNGFDPNALPKISG 366
++ SAIRIK++ GRG +V+++++ M L + TG YG+HPD+ +DP+ALP I
Sbjct: 370 FDSHSAIRIKTSPGRGGYVRNVYISNMILVNVDIAIRFTGLYGEHPDDTYDPDALPVIER 549
Query: 367 INYRDVTAKNVTIAGKLEGISNDPFTGICVSNVTIEMSAHKKKLPWNCTDISGVTSNVVP 426
I +DV + V AG ++GI D F IC+SN+T+ +S KKLPWNC+ + G + V P
Sbjct: 550 ITIKDVIGEKVKRAGLIQGIKGDNFVNICLSNITLNVS---KKLPWNCSYVKGYSDLVSP 720
Query: 427 KPCELLQEK 435
+ CE L+E+
Sbjct: 721 EACEPLRER 747
>TC223982 similar to UP|Q84LI7 (Q84LI7) Polygalacturonase-like protein,
partial (31%)
Length = 445
Score = 249 bits (636), Expect = 2e-66
Identities = 115/146 (78%), Positives = 136/146 (92%)
Frame = +3
Query: 177 YMIEIMYSDQIQISNLTLINSPTWFVHPIYSSNIIINGLTILAPVDSPNTDGINPDSCTN 236
Y+IE+M+SD+IQISNLTL+NSP+W VHP+YSSNIII GLTI+APV SPNTDGINPDSCTN
Sbjct: 3 YLIELMFSDKIQISNLTLLNSPSWNVHPVYSSNIIIKGLTIIAPVPSPNTDGINPDSCTN 182
Query: 237 VRIEDNFIVSGDDCIAIKSGWDEYGIKVGMPSQQIIIRRLTCISPDSAMVALGSEMSGGI 296
RIED +IVSGDDC+A+KSGWDEYGIK G P++Q++IRRLTCISP+SA +ALGSEMSGGI
Sbjct: 183 TRIEDCYIVSGDDCVAVKSGWDEYGIKFGWPTKQLVIRRLTCISPESAAIALGSEMSGGI 362
Query: 297 QDVRIEDVTAINTESAIRIKSAVGRG 322
QDVR ED+TAI+TES +RIK+AVGRG
Sbjct: 363 QDVRAEDITAIHTESGVRIKTAVGRG 440
>TC218204 similar to UP|Q9FJ27 (Q9FJ27) Polygalacturonase-like protein,
partial (51%)
Length = 1014
Score = 238 bits (607), Expect = 4e-63
Identities = 118/266 (44%), Positives = 163/266 (60%)
Frame = +2
Query: 171 LTLTRPYMIEIMYSDQIQISNLTLINSPTWFVHPIYSSNIIINGLTILAPVDSPNTDGIN 230
L TRP ++E + S I ISN+ NSP W +HP+Y SN+++ +TILAP DSPNTDGI+
Sbjct: 2 LQFTRPNLVEFVNSQDIIISNVIFKNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGID 181
Query: 231 PDSCTNVRIEDNFIVSGDDCIAIKSGWDEYGIKVGMPSQQIIIRRLTCISPDSAMVALGS 290
PDS +NV IED++I +GDD +A+KSGWDEYGI G PS I IRR+T SP A +A+GS
Sbjct: 182 PDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSYGITIRRVTGSSP-FAGIAIGS 358
Query: 291 EMSGGIQDVRIEDVTAINTESAIRIKSAVGRGAFVKDIFVKGMDLNTMKYVFWMTGSYGD 350
E SGG+++V E + N I IK+ GRG +K+I V + + + + G G
Sbjct: 359 ETSGGVENVLAEHINLFNMGVGIHIKTNSGRGGLIKNITVAHVYVENARQGIKIAGDVGG 538
Query: 351 HPDNGFDPNALPKISGINYRDVTAKNVTIAGKLEGISNDPFTGICVSNVTIEMSAHKKKL 410
HPD F+PNALP + GI ++V V AG + G+ N PFT +C+S++ +
Sbjct: 539 HPDEKFNPNALPVVKGITIKNVWGVKVNQAGLIHGLRNSPFTDVCLSDINFHGMEGPRSP 718
Query: 411 PWNCTDISGVTSNVVPKPCELLQEKE 436
W C+D+ G V P PC L +E
Sbjct: 719 SWKCSDVFGFAHQVSPWPCSQLSSQE 796
>TC205976 similar to UP|Q84LI7 (Q84LI7) Polygalacturonase-like protein,
partial (32%)
Length = 689
Score = 221 bits (562), Expect = 7e-58
Identities = 99/171 (57%), Positives = 134/171 (77%), Gaps = 4/171 (2%)
Frame = +2
Query: 296 IQDVRIEDVTAINTESAIRIKSAVGRGAFVKDIFVKGMDLNTMKYVFWMTGSYGDHPDNG 355
IQD+R ED+ AINTES +RIK+AVGRG +VKDIFV+ M + TMK+ FWMTG+YG H D+
Sbjct: 2 IQDMRAEDIVAINTESGVRIKTAVGRGGYVKDIFVRRMTMKTMKWAFWMTGNYGSHADDN 181
Query: 356 FDPNALPKISGINYRDVTAKNVTIAGKLEGISNDPFTGICVSNVTIEMSAHKKKLPWNCT 415
+DPNALP I INYRD+ A+NVT+A +LEGIS DPFTGIC+SNVTI+++ KK+PW CT
Sbjct: 182 YDPNALPVIQNINYRDMVAENVTMAARLEGISGDPFTGICISNVTIQLAKKAKKVPWTCT 361
Query: 416 DISGVTSNVVPKPCELL----QEKEIECPFPTDKLAIENVQFKTCNFQSSV 462
DI+G++S+V P PC+LL +EK C FP + L IE+++ +TC ++ ++
Sbjct: 362 DIAGISSDVTPAPCDLLPDQGEEKIGACTFPEESLPIEDIKVQTCTYRRNL 514
>TC207014 weakly similar to UP|Q8LAH2 (Q8LAH2) Polygalacturonase-like
protein, partial (66%)
Length = 1299
Score = 173 bits (439), Expect = 1e-43
Identities = 90/250 (36%), Positives = 144/250 (57%)
Frame = +1
Query: 180 EIMYSDQIQISNLTLINSPTWFVHPIYSSNIIINGLTILAPVDSPNTDGINPDSCTNVRI 239
+I++S +Q+ T + ++ ++ S ++ N L +LA S NV I
Sbjct: 127 QILHS*MLQLIAYTQFIA-AMYIFKMFQSLLLQNPLILLA*CQY---------SSDNVCI 276
Query: 240 EDNFIVSGDDCIAIKSGWDEYGIKVGMPSQQIIIRRLTCISPDSAMVALGSEMSGGIQDV 299
ED + G D I++KSGWDEYGI G P++ + IRR+ + + +A GS+MSGGI +V
Sbjct: 277 EDCIVAMGFDAISLKSGWDEYGIAYGRPTENVHIRRVQLHAFSGSALAFGSDMSGGISNV 456
Query: 300 RIEDVTAINTESAIRIKSAVGRGAFVKDIFVKGMDLNTMKYVFWMTGSYGDHPDNGFDPN 359
+E N+ S I ++ GRG ++K+I + + + + TG+ G HPD+ FDPN
Sbjct: 457 LVEHAHLFNSNSGIEFRTTKGRGGYMKEIVMSDIQMENVHTAIAATGNCGSHPDDKFDPN 636
Query: 360 ALPKISGINYRDVTAKNVTIAGKLEGISNDPFTGICVSNVTIEMSAHKKKLPWNCTDISG 419
ALP + I +DV N+TIAG L GI PFT IC+SN+T+ ++ + W C+++SG
Sbjct: 637 ALPHLDHITLKDVIGTNITIAGNLAGIDESPFTNICLSNITLSTNS-VSPITWACSNVSG 813
Query: 420 VTSNVVPKPC 429
+ +V+P+PC
Sbjct: 814 FSDSVLPEPC 843
Score = 88.6 bits (218), Expect = 5e-18
Identities = 37/82 (45%), Positives = 56/82 (68%)
Frame = +3
Query: 150 GDNGTIDGQGSYWWDKFHKKQLTLTRPYMIEIMYSDQIQISNLTLINSPTWFVHPIYSSN 209
G+NGTIDG G WWD + L +RP+++EI+ SD + +SNLT +N+P + +HP+Y S+
Sbjct: 6 GNNGTIDGMGMVWWDWYSTHSLNHSRPHLVEIVASDYVVVSNLTFLNAPAYSIHPVYCSH 185
Query: 210 IIINGLTILAPVDSPNTDGINP 231
+ I ++I P +SP T GI P
Sbjct: 186 VHIQNVSISTPPESPYTVGIVP 251
>BE801009
Length = 425
Score = 164 bits (416), Expect = 6e-41
Identities = 79/141 (56%), Positives = 102/141 (72%), Gaps = 1/141 (0%)
Frame = +3
Query: 137 LIFGTNLTDVIITGDNGTIDGQGSYWWDKFHKKQLTLTRPYMIEIMYSDQIQISNLTLIN 196
LI G NL DV+ITG NGTI+GQG WW K+ +K L TR +++I++S I ISN+TL +
Sbjct: 3 LIHGQNLVDVVITGHNGTINGQGQTWWTKYRQKLLNHTRGPLVQILWSSNIVISNITLRD 182
Query: 197 SPTWFVHPIYSSNIIINGLTILAPVD-SPNTDGINPDSCTNVRIEDNFIVSGDDCIAIKS 255
SP W +HP N+ + +TILAPV +PNTDGI+PDSC ++ IED +I GDD IAIKS
Sbjct: 183 SPFWTLHPYDCKNVTVKKVTILAPVSHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKS 362
Query: 256 GWDEYGIKVGMPSQQIIIRRL 276
GWD+YGI G PS+ I+IR L
Sbjct: 363 GWDQYGITYGRPSKNIVIRNL 425
>TC209699
Length = 978
Score = 120 bits (300), Expect(3) = 1e-37
Identities = 59/120 (49%), Positives = 82/120 (68%)
Frame = +2
Query: 239 IEDNFIVSGDDCIAIKSGWDEYGIKVGMPSQQIIIRRLTCISPDSAMVALGSEMSGGIQD 298
IED +I +GDD IAIKSGWDEYGI G PS III RL + S +A+GSEMSGG+ +
Sbjct: 5 IEDCYISTGDDLIAIKSGWDEYGIAYGRPSTNIIIHRLVGKTQTSG-IAIGSEMSGGVSE 181
Query: 299 VRIEDVTAINTESAIRIKSAVGRGAFVKDIFVKGMDLNTMKYVFWMTGSYGDHPDNGFDP 358
V ED+ ++ +AIRIK++ GRG +V++I+V + L + TG YG+HPD+ ++P
Sbjct: 182 VHAEDIQFYDSYNAIRIKTSPGRGGYVRNIYVSNVTLANVDIAITFTGLYGEHPDDAYNP 361
Score = 43.9 bits (102), Expect(3) = 1e-37
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +1
Query: 386 ISNDPFTGICVSNVTIEMSAHKKKLPWNCTDISGVTSNVVPKPCELLQEKEI-----ECP 440
+ D F IC+SN+ + ++++ PWNC+ + G + V P+ CE L+E+ +C
Sbjct: 445 LEGDNFVNICLSNIILNVTSN---YPWNCSYVKGYSDLVQPEACEPLKERIFPDHCSDCY 615
Query: 441 FPTDKLAIENVQ 452
+ T+++ N Q
Sbjct: 616 YLTNQIQSSNSQ 651
Score = 31.2 bits (69), Expect(3) = 1e-37
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 359 NALPKISGINYRDVTAKNVTIAGKLEGI 386
NALP I I +DV +N+ AG +EGI
Sbjct: 363 NALPVIEKITIKDVVGENIKTAGLIEGI 446
>BU545459
Length = 495
Score = 151 bits (382), Expect = 5e-37
Identities = 71/120 (59%), Positives = 88/120 (73%), Gaps = 4/120 (3%)
Frame = -1
Query: 344 MTGSYGDHPDNGFDPNALPKISGINYRDVTAKNVTIAGKLEGISNDPFTGICVSNVTIEM 403
MTG+YG H D+ +DPNALP+I+GINYRDV A NVTIA +LEGISNDPFTGIC++NVTI M
Sbjct: 495 MTGNYGSHXDSHYDPNALPEINGINYRDVVADNVTIAARLEGISNDPFTGICIANVTINM 316
Query: 404 SAHKKKLPWNCTDISGVTSNVVPKPCELL----QEKEIECPFPTDKLAIENVQFKTCNFQ 459
+A KK PW CTDI G+TS V PKPC L EK C FP + L I+ ++ + C ++
Sbjct: 315 AAKAKKQPWACTDIEGITSGVTPKPCNSLPDQGPEKIKACDFPQENLPIDMLELQKCVYK 136
>CA784537
Length = 434
Score = 150 bits (379), Expect = 1e-36
Identities = 73/119 (61%), Positives = 88/119 (73%)
Frame = +1
Query: 31 PAINCRKHSAVLTDFGAVGDGKTLNTKAFNAAITNLSQYANDGGAQLIVPPGKWLTGSFN 90
P ++ R HS + +FGAVGDGKTLNT AF AI L +A+ GGAQL VPPGKWLTGSFN
Sbjct: 76 PTLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFN 255
Query: 91 LTSHFTLFLQKDAVILGSQDESEWPQLLVLPSYGRGRDAPAGRFSSLIFGTNLTDVIIT 149
LTSH TLFL+K AV++G+QD S W + LPSYGRG + P GR+ SLI G L DV++T
Sbjct: 256 LTSHLTLFLEKGAVLIGTQDPSHWDVVEPLPSYGRGLEVPGGRYQSLINGYMLHDVVVT 432
>TC221723 similar to UP|Q84LI7 (Q84LI7) Polygalacturonase-like protein,
partial (24%)
Length = 485
Score = 87.8 bits (216), Expect(2) = 2e-33
Identities = 44/66 (66%), Positives = 49/66 (73%)
Frame = +1
Query: 74 GAQLIVPPGKWLTGSFNLTSHFTLFLQKDAVILGSQDESEWPQLLVLPSYGRGRDAPAGR 133
GA L VP GK LTGSF+L SH TL L KD +L SQD EWP + LPSYGRGRDA AGR
Sbjct: 286 GAHLYVPAGK*LTGSFSLISHLTLGLNKDTFLLASQDIREWPVIEPLPSYGRGRDAAAGR 465
Query: 134 FSSLIF 139
++SLIF
Sbjct: 466 YTSLIF 483
Score = 73.6 bits (179), Expect(2) = 2e-33
Identities = 38/74 (51%), Positives = 50/74 (67%)
Frame = +3
Query: 1 VIGVISVVLILGSLAECRVPSSIKLNNFDYPAINCRKHSAVLTDFGAVGDGKTLNTKAFN 60
V ++ V L+ +AE R + + +F++ AINCR HSA L DFG VGDG T NTKAF
Sbjct: 69 VCALLLVTLLSSEVAESRKAKTAR-TSFEHKAINCRAHSASLIDFGGVGDGNTSNTKAFQ 245
Query: 61 AAITNLSQYANDGG 74
+AI++LSQYA GG
Sbjct: 246 SAISHLSQYAFKGG 287
>CD395775
Length = 644
Score = 131 bits (329), Expect = 7e-31
Identities = 58/148 (39%), Positives = 94/148 (63%)
Frame = -2
Query: 286 VALGSEMSGGIQDVRIEDVTAINTESAIRIKSAVGRGAFVKDIFVKGMDLNTMKYVFWMT 345
+A GS+MSGGI ++ +E+V N++S I ++ GRG ++K+I + +++ + T
Sbjct: 640 IAFGSDMSGGISNILVENVHLYNSKSGIEFRTMRGRGGYMKEIIISDIEMENIYTAIAAT 461
Query: 346 GSYGDHPDNGFDPNALPKISGINYRDVTAKNVTIAGKLEGISNDPFTGICVSNVTIEMSA 405
G G HPD+ FDPNALP + I +D+ N+TIAG G+ PFT IC+SN+T+ ++
Sbjct: 460 GYCGSHPDDKFDPNALPLLDHIILQDMIGTNITIAGSFAGLQESPFTNICLSNITLSTNS 281
Query: 406 HKKKLPWNCTDISGVTSNVVPKPCELLQ 433
+PW C+++SG + V+PKPC L+
Sbjct: 280 -VSSIPWECSNVSGFSDYVLPKPCPDLE 200
>TC233934 weakly similar to UP|Q8LAH2 (Q8LAH2) Polygalacturonase-like
protein, partial (27%)
Length = 911
Score = 118 bits (295), Expect = 6e-27
Identities = 56/158 (35%), Positives = 93/158 (58%)
Frame = +2
Query: 284 AMVALGSEMSGGIQDVRIEDVTAINTESAIRIKSAVGRGAFVKDIFVKGMDLNTMKYVFW 343
A +A GSEMSGGI + E + +N+ I +K+ GRG +++ IF+ +L +
Sbjct: 59 AGLAFGSEMSGGISVIIAEKLHILNSPIGIELKTTRGRGGYMRGIFISDAELENISLGVS 238
Query: 344 MTGSYGDHPDNGFDPNALPKISGINYRDVTAKNVTIAGKLEGISNDPFTGICVSNVTIEM 403
MTG G HPD+ +D ++LP + I +++V N+++AG GI PF+ IC+SNVT +
Sbjct: 239 MTGYSGFHPDDKYDTSSLPVVGDITFKNVIGANISVAGNFSGIVESPFSTICLSNVTFSL 418
Query: 404 SAHKKKLPWNCTDISGVTSNVVPKPCELLQEKEIECPF 441
S+ W C+++ G + +V+P+PC +Q + PF
Sbjct: 419 SSEPSP-SWFCSNVIGFSEHVIPEPCPDIQSSYSKFPF 529
>CA853125 similar to GP|11762132|gb| AT3g62110 {Arabidopsis thaliana},
partial (17%)
Length = 546
Score = 107 bits (266), Expect = 1e-23
Identities = 51/80 (63%), Positives = 61/80 (75%)
Frame = +3
Query: 36 RKHSAVLTDFGAVGDGKTLNTKAFNAAITNLSQYANDGGAQLIVPPGKWLTGSFNLTSHF 95
R HS +T+FGAVGDG TLNTKAF AI L+ +A+ GGA+L VP G+WLTGSF+L SH
Sbjct: 279 RPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHL 458
Query: 96 TLFLQKDAVILGSQDESEWP 115
TL L KDAVILGS + +WP
Sbjct: 459 TLSLDKDAVILGSTNPEDWP 518
>BU765101
Length = 423
Score = 106 bits (265), Expect = 2e-23
Identities = 51/78 (65%), Positives = 58/78 (73%)
Frame = +1
Query: 73 GGAQLIVPPGKWLTGSFNLTSHFTLFLQKDAVILGSQDESEWPQLLVLPSYGRGRDAPAG 132
GGAQL VPPG+WLT FNLTSH TLFL +DAVILG DE WP + LPSYG GR+ P
Sbjct: 1 GGAQLNVPPGRWLTAPFNLTSHMTLFLAEDAVILGIDDEKYWPLMPPLPSYGYGREHPGP 180
Query: 133 RFSSLIFGTNLTDVIITG 150
R+ SLI G +L DV+ITG
Sbjct: 181 RYGSLIHGQHLKDVVITG 234
>NP004759 polygalacturonase PG1
Length = 1332
Score = 104 bits (260), Expect = 7e-23
Identities = 101/410 (24%), Positives = 179/410 (43%), Gaps = 20/410 (4%)
Frame = +1
Query: 44 DFGAVGDGKTLNTKAFNAAITNLSQYANDGGAQLIVPPGK-WLTGSFNLTS---HFTLFL 99
D+GA GDG +TKAF A + G+ ++VP G +L + + +
Sbjct: 148 DYGAKGDGHADDTKAFEDAWAAACKVE---GSTMVVPSGSVFLVKPISFSGPNCEPNIVF 318
Query: 100 QKDAVILGSQDESEWPQLLVLPSYGRGRDAPAGRFSSLIFGTNLTDVIITGDNGTIDGQG 159
Q D I+ W +G L F + L + I G G IDGQG
Sbjct: 319 QLDGKIIAPTSSEAWG---------------SGTLQWLEF-SKLNTITIRG-KGVIDGQG 447
Query: 160 SYWWDK----FHKKQLTL--------TRPYMIEIMYSDQIQISNLTLINSPTWFVHPIYS 207
S WW+ ++ ++ L T+P + SD + ++ +T+ NS +
Sbjct: 448 SVWWNNDSPTYNPTEVMLESNGRLPSTKPTALRFYGSDGVTVTGITIQNSQQTHLKFDSC 627
Query: 208 SNIIINGLTILAPVDSPNTDGINPDSCTNVRIEDNFIVSGDDCIAIKSGWDEYGIKVGMP 267
+N+ ++G+++ +P DSPNTDGI+ + NV I + + GDDC++I++G +
Sbjct: 628 TNVQVSGISVSSPGDSPNTDGIHLQNSQNVVIYSSTLACGDDCVSIQTGCSD-------- 783
Query: 268 SQQIIIRRLTCISPDSAMV-ALGSEMSGG-IQDVRIEDVTAINTESAIRIKSAVGRGAFV 325
I + + C + +LG E + +++V + DVT NT + +RIK+ G V
Sbjct: 784 ---IYVHNVNCGPGHGISIGSLGRENTKACVRNVTVRDVTIQNTLTGVRIKTWQGGSGSV 954
Query: 326 KDIFVKGMDLNTMKYVFWMTGSYGDHPDNGFDPNALPKISGINYRDVTAKNVTIAGKLEG 385
++I + ++ ++ + Y D + +A+ +SGI+Y +V
Sbjct: 955 QNIMFSNVQVSGVQTPISIDQYYCDGGRCRNESSAV-AVSGIHYVNVKGTYTKEPIYFAC 1131
Query: 386 ISNDPFTGICVSNVTIEMSAHKK--KLPWNCTDISGVTSNVVPKPCELLQ 433
N P +GI + + +E + K +P+ C + G P E LQ
Sbjct: 1132SDNLPCSGITLDTIQLESAQETKNSNVPF-CWEAYGELKTTTVPPVECLQ 1278
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,760,546
Number of Sequences: 63676
Number of extensions: 256040
Number of successful extensions: 1260
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of query: 463
length of database: 12,639,632
effective HSP length: 101
effective length of query: 362
effective length of database: 6,208,356
effective search space: 2247424872
effective search space used: 2247424872
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC121237.2