BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121233.12 - phase: 0
(107 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC212209 similar to UP|O22973 (O22973) Thaumatin isolog, partial... 189 1e-49
TC228135 similar to PIR|T05694|T05694 pathogenesis-related prote... 171 6e-44
TC222863 similar to GB|AAP13435.1|30023804|BT006327 At1g20030 {A... 150 7e-38
TC228762 similar to GB|AAP13435.1|30023804|BT006327 At1g20030 {A... 147 1e-36
TC228763 similar to GB|AAP13435.1|30023804|BT006327 At1g20030 {A... 145 2e-36
TC218320 similar to GB|AAP13435.1|30023804|BT006327 At1g20030 {A... 144 5e-36
TC220668 similar to UP|Q9MB90 (Q9MB90) Thaumatin-like protein (F... 132 3e-32
TC205651 similar to UP|TLPH_ARATH (P50699) Thaumatin-like protei... 127 8e-31
TC204396 similar to GB|AAC36740.1|3643249|AF090143 thaumatin-lik... 118 5e-28
TC209980 similar to UP|TP1B_MALDO (P83336) Thaumatin-like protei... 112 4e-26
BM093527 109 2e-25
TC231432 weakly similar to UP|Q9CA24 (Q9CA24) Thaumatin-like pro... 109 2e-25
TC205652 similar to UP|TLPH_ARATH (P50699) Thaumatin-like protei... 108 5e-25
TC217169 homologue to UP|O81926 (O81926) Thaumatin-like protein ... 102 3e-23
TC229565 similar to PIR|T05694|T05694 pathogenesis-related prote... 101 6e-23
TC226774 UP|P21_SOYBN (P25096) P21 protein, complete 99 2e-22
TC226940 weakly similar to UP|Q93XD4 (Q93XD4) Thaumatin-like pro... 96 3e-21
TC226941 weakly similar to UP|Q8LEV9 (Q8LEV9) Osmotin, partial (... 95 6e-21
TC226775 homologue to UP|P21_SOYBN (P25096) P21 protein, partial... 94 8e-21
TC217170 homologue to UP|O81926 (O81926) Thaumatin-like protein ... 86 3e-18
>TC212209 similar to UP|O22973 (O22973) Thaumatin isolog, partial (42%)
Length = 668
Score = 189 bits (481), Expect = 1e-49
Identities = 84/106 (79%), Positives = 95/106 (89%)
Frame = +1
Query: 1 MVETSGGSGSCQATGCGEDLNRRCPSELRVDGGDACNSACGAFGTPEYCCSGAFGSPSSC 60
MV+ SGG G C ATGCG DLNRRCP+ELRVDGGDAC SAC AFG PE+CCSGAF SP++C
Sbjct: 25 MVDXSGGXGXCAATGCGADLNRRCPAELRVDGGDACQSACRAFGKPEFCCSGAFNSPAAC 204
Query: 61 SPSVYSEMFKSACPKSYSYAFDDATSTFTCTAADDYTITFCPSSSP 106
+PS+YS++FK+ACPKSYSYAFDDATSTFTCTAA DYT+TFCP SSP
Sbjct: 205 APSMYSQIFKAACPKSYSYAFDDATSTFTCTAA-DYTVTFCPFSSP 339
>TC228135 similar to PIR|T05694|T05694 pathogenesis-related protein
F20M13.220 - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (72%)
Length = 1451
Score = 171 bits (432), Expect = 6e-44
Identities = 74/104 (71%), Positives = 90/104 (86%)
Frame = +3
Query: 1 MVETSGGSGSCQATGCGEDLNRRCPSELRVDGGDACNSACGAFGTPEYCCSGAFGSPSSC 60
+VE +GGSG C +TGC DLN++CP+ELR G AC SAC AFG+PEYCCSGA+GSP++C
Sbjct: 606 IVEGTGGSGLCASTGCTSDLNQQCPAELRASEGSACKSACEAFGSPEYCCSGAYGSPATC 785
Query: 61 SPSVYSEMFKSACPKSYSYAFDDATSTFTCTAADDYTITFCPSS 104
PS+YSEMFK+ACP+SYSYA+DDATSTFTC+ A DYT+TFCPSS
Sbjct: 786 RPSIYSEMFKAACPRSYSYAYDDATSTFTCSGA-DYTVTFCPSS 914
>TC222863 similar to GB|AAP13435.1|30023804|BT006327 At1g20030 {Arabidopsis
thaliana;} , partial (75%)
Length = 1057
Score = 150 bits (380), Expect = 7e-38
Identities = 72/115 (62%), Positives = 88/115 (75%), Gaps = 8/115 (6%)
Frame = +2
Query: 1 MVETSGGSG-SCQATGCGEDLNRRCPSELRVDGGD-----ACNSACGAFGTPEYCCSGAF 54
+V GGSG +C +TGC DLN CPSELRV D AC SAC AFG+P+YCCSGA+
Sbjct: 542 LVAPQGGSGDNCTSTGCVGDLNGACPSELRVTSVDGKQSVACKSACEAFGSPQYCCSGAY 721
Query: 55 GSPSSCSPSVYSEMFKSACPKSYSYAFDDATSTFTCTAADDYTITFC--PSSSPR 107
GSP++C PS YS++FK+ACP++YSYA+DD TSTFTC +A YTITFC PSS+PR
Sbjct: 722 GSPTTCKPSPYSQIFKNACPRAYSYAYDDKTSTFTCASAAAYTITFCPSPSSNPR 886
>TC228762 similar to GB|AAP13435.1|30023804|BT006327 At1g20030 {Arabidopsis
thaliana;} , partial (43%)
Length = 1251
Score = 147 bits (370), Expect = 1e-36
Identities = 70/110 (63%), Positives = 82/110 (73%), Gaps = 7/110 (6%)
Frame = +2
Query: 1 MVETSGGSGS-CQATGCGEDLNRRCPSELRVDGGD------ACNSACGAFGTPEYCCSGA 53
+V GGSG C ATGC DLN CPSEL+V G D AC SAC AF +P+YCCSGA
Sbjct: 101 LVVPQGGSGEKCTATGCVGDLNGACPSELKVMGADGREGVVACKSACEAFNSPQYCCSGA 280
Query: 54 FGSPSSCSPSVYSEMFKSACPKSYSYAFDDATSTFTCTAADDYTITFCPS 103
+G+P +C PS YS +FKSACP++YSYA+DD TSTFTC +A DYTITFCPS
Sbjct: 281 YGTPDTCKPSAYSAIFKSACPRAYSYAYDDKTSTFTCASA-DYTITFCPS 427
>TC228763 similar to GB|AAP13435.1|30023804|BT006327 At1g20030 {Arabidopsis
thaliana;} , partial (69%)
Length = 699
Score = 145 bits (367), Expect = 2e-36
Identities = 70/110 (63%), Positives = 82/110 (73%), Gaps = 7/110 (6%)
Frame = +2
Query: 1 MVETSGGSGS-CQATGCGEDLNRRCPSELRVDGGD------ACNSACGAFGTPEYCCSGA 53
+V GGSG C ATGC DLN CPSEL+V GD AC SAC AF +P+YCCSGA
Sbjct: 341 LVVPQGGSGEKCSATGCVGDLNGACPSELKVMSGDGREGVVACKSACEAFNSPQYCCSGA 520
Query: 54 FGSPSSCSPSVYSEMFKSACPKSYSYAFDDATSTFTCTAADDYTITFCPS 103
+G+P +C S YSE+FKSACP++YSYA+DD TSTFTC +A DYTITFCPS
Sbjct: 521 YGTPDTCKSSSYSEIFKSACPRAYSYAYDDKTSTFTCASA-DYTITFCPS 667
>TC218320 similar to GB|AAP13435.1|30023804|BT006327 At1g20030 {Arabidopsis
thaliana;} , partial (33%)
Length = 1000
Score = 144 bits (364), Expect = 5e-36
Identities = 65/100 (65%), Positives = 78/100 (78%), Gaps = 5/100 (5%)
Frame = +3
Query: 11 CQATGCGEDLNRRCPSELRVDGGD-----ACNSACGAFGTPEYCCSGAFGSPSSCSPSVY 65
C +TGC DLN CPSELRV D AC SAC AFG+P+YCCSGA+GSP++C PS Y
Sbjct: 27 CTSTGCVGDLNGACPSELRVTSVDGKQSVACKSACEAFGSPQYCCSGAYGSPTTCKPSPY 206
Query: 66 SEMFKSACPKSYSYAFDDATSTFTCTAADDYTITFCPSSS 105
S++FK+ACP++YSYA+DD TSTFTC +A YTITFCPS S
Sbjct: 207 SQIFKNACPRAYSYAYDDKTSTFTCASAAAYTITFCPSPS 326
>TC220668 similar to UP|Q9MB90 (Q9MB90) Thaumatin-like protein (Fragment),
partial (66%)
Length = 493
Score = 132 bits (331), Expect = 3e-32
Identities = 60/106 (56%), Positives = 78/106 (72%), Gaps = 4/106 (3%)
Frame = +1
Query: 2 VETSGGSGSCQATGCGEDLNRRCPSELRV-DGGD---ACNSACGAFGTPEYCCSGAFGSP 57
V +GG+G C+ GC EDLN CP+EL+V DGG AC SAC AF T E+CC+G SP
Sbjct: 49 VRATGGTGDCKYAGCSEDLNAACPAELQVKDGGGEVVACKSACAAFNTAEFCCTGDHSSP 228
Query: 58 SSCSPSVYSEMFKSACPKSYSYAFDDATSTFTCTAADDYTITFCPS 103
+CSP++YS++FK+ACP +YSYA+DD +S TC+ + DY ITFCPS
Sbjct: 229 QTCSPTLYSKIFKNACPAAYSYAYDDPSSICTCSGS-DYVITFCPS 363
>TC205651 similar to UP|TLPH_ARATH (P50699) Thaumatin-like protein precursor,
partial (91%)
Length = 1285
Score = 127 bits (319), Expect = 8e-31
Identities = 57/101 (56%), Positives = 71/101 (69%), Gaps = 5/101 (4%)
Frame = +1
Query: 7 GSGSCQATGCGEDLNRRCPSELRVDGGD-----ACNSACGAFGTPEYCCSGAFGSPSSCS 61
GSG C GC DLN CP L+V D AC SAC AF +P YCC+G++GSP +C
Sbjct: 439 GSGKCSYAGCVSDLNTMCPVGLQVRSRDNKRVVACKSACSAFNSPRYCCTGSYGSPQACK 618
Query: 62 PSVYSEMFKSACPKSYSYAFDDATSTFTCTAADDYTITFCP 102
P+VYS++FK+ACPK+YSYA+DD TS TCT A +Y +TFCP
Sbjct: 619 PTVYSKIFKTACPKAYSYAYDDPTSIATCTKA-NYLVTFCP 738
>TC204396 similar to GB|AAC36740.1|3643249|AF090143 thaumatin-like protein
precursor Mdtl1 {Malus x domestica;} , partial (92%)
Length = 1028
Score = 118 bits (295), Expect = 5e-28
Identities = 52/108 (48%), Positives = 71/108 (65%), Gaps = 4/108 (3%)
Frame = +2
Query: 2 VETSGGSGSCQATGCGEDLNRRCPSELRVDGGD----ACNSACGAFGTPEYCCSGAFGSP 57
V GGSG C+ + C +++N CP+EL+V G D AC SAC AF YCC+G +
Sbjct: 458 VTPQGGSGDCKTSSCPKNINSVCPAELQVKGSDGNVIACKSACEAFKEDRYCCTGPNNTA 637
Query: 58 SSCSPSVYSEMFKSACPKSYSYAFDDATSTFTCTAADDYTITFCPSSS 105
+C P+ YS++F+ CP +YSYA+DD +STFTC+ DY ITFCP S+
Sbjct: 638 ETCPPTNYSQIFEEQCPDAYSYAYDDKSSTFTCSNRPDYAITFCP*SA 781
>TC209980 similar to UP|TP1B_MALDO (P83336) Thaumatin-like protein 1b
(Pathogenesis-related protein 5b) (PR-5b) (Fragment),
partial (65%)
Length = 927
Score = 112 bits (279), Expect = 4e-26
Identities = 50/107 (46%), Positives = 67/107 (61%), Gaps = 6/107 (5%)
Frame = +3
Query: 2 VETSGGSGSCQATGCGEDLN--RRCPSELRVDGGD----ACNSACGAFGTPEYCCSGAFG 55
+ GGSG C+ + C ++N CPSEL+V G D ACNSAC AF +YCC G +
Sbjct: 114 ITPQGGSGECKTSSCPNNINDVNVCPSELQVKGSDGNVIACNSACVAFNEDQYCCRGDYD 293
Query: 56 SPSSCSPSVYSEMFKSACPKSYSYAFDDATSTFTCTAADDYTITFCP 102
+ +C P+ YS++ + CP +YSYA+DD +STFTC DY I FCP
Sbjct: 294 TEETCPPTNYSQIVEEQCPDAYSYAYDDKSSTFTCFNGPDYAIIFCP 434
>BM093527
Length = 399
Score = 109 bits (273), Expect = 2e-25
Identities = 46/70 (65%), Positives = 56/70 (79%)
Frame = +2
Query: 36 CNSACGAFGTPEYCCSGAFGSPSSCSPSVYSEMFKSACPKSYSYAFDDATSTFTCTAADD 95
C SAC AF P+YCCSGA+ +P +C PS YS+ FKSACP++YSYA+DD +STFTC +A D
Sbjct: 2 CKSACEAFDDPQYCCSGAYATPDTCKPSSYSQFFKSACPRAYSYAYDDGSSTFTCASA-D 178
Query: 96 YTITFCPSSS 105
YTITFCP S
Sbjct: 179 YTITFCPQPS 208
>TC231432 weakly similar to UP|Q9CA24 (Q9CA24) Thaumatin-like protein;
12104-13574, partial (35%)
Length = 761
Score = 109 bits (272), Expect = 2e-25
Identities = 49/106 (46%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Frame = +3
Query: 1 MVETSGGSGSCQATGCGEDLNRRCPSELRVDGGD---ACNSACGAFGTPEYCCSGAFGSP 57
+V+ G+G+C GC DL + CPSEL D AC SAC F T EYCC G +G+P
Sbjct: 105 VVKAINGTGNCSTVGCDGDLRQNCPSELASKDNDKVIACRSACDVFNTDEYCCRGTYGNP 284
Query: 58 SSCSPSVYSEMFKSACPKSYSYAFDDATSTFTCTAADDYTITFCPS 103
++C S YS++FK CP +YS+A DD TS TC+ A ++ + FC S
Sbjct: 285 ATCLASNYSKIFKQVCPAAYSFALDDPTSLITCSKA-NFVVIFCGS 419
>TC205652 similar to UP|TLPH_ARATH (P50699) Thaumatin-like protein precursor,
partial (85%)
Length = 695
Score = 108 bits (269), Expect = 5e-25
Identities = 48/88 (54%), Positives = 61/88 (68%), Gaps = 5/88 (5%)
Frame = +1
Query: 7 GSGSCQATGCGEDLNRRCPSELRVDGGD-----ACNSACGAFGTPEYCCSGAFGSPSSCS 61
GSG C GC DLN CP L+V D AC SAC AF +P+YCC+G++GSP +C
Sbjct: 430 GSGKCSYAGCVSDLNTMCPVGLQVRSRDNKRVVACKSACSAFNSPKYCCTGSYGSPQACK 609
Query: 62 PSVYSEMFKSACPKSYSYAFDDATSTFT 89
P+VYS++FK+ACPK+ SYA+DD TS T
Sbjct: 610 PTVYSKIFKTACPKANSYAYDDPTSIAT 693
>TC217169 homologue to UP|O81926 (O81926) Thaumatin-like protein PR-5b
precursor (Fragment), partial (87%)
Length = 945
Score = 102 bits (254), Expect = 3e-23
Identities = 47/99 (47%), Positives = 55/99 (55%)
Frame = +2
Query: 8 SGSCQATGCGEDLNRRCPSELRVDGGDACNSACGAFGTPEYCCSGAFGSPSSCSPSVYSE 67
+G C C D+N +CP LR GG CN+ C F T EYCC+ GS C P+ YS
Sbjct: 422 NGGCHKISCSADINGQCPGPLRAPGG--CNNPCTVFKTNEYCCTNGQGS---CGPTNYSR 586
Query: 68 MFKSACPKSYSYAFDDATSTFTCTAADDYTITFCPSSSP 106
FK C SYSY DD TSTFTC A +Y + FCP P
Sbjct: 587 FFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFCPLGEP 703
>TC229565 similar to PIR|T05694|T05694 pathogenesis-related protein
F20M13.220 - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (19%)
Length = 673
Score = 101 bits (251), Expect = 6e-23
Identities = 44/58 (75%), Positives = 51/58 (87%)
Frame = +3
Query: 47 EYCCSGAFGSPSSCSPSVYSEMFKSACPKSYSYAFDDATSTFTCTAADDYTITFCPSS 104
EYCC+GAF S+C PS+YS+MFKS CPK+YSYA+DDATSTFTC+ A DYTITFCPSS
Sbjct: 3 EYCCNGAFSXXSTCKPSMYSQMFKSTCPKAYSYAYDDATSTFTCSGA-DYTITFCPSS 173
>TC226774 UP|P21_SOYBN (P25096) P21 protein, complete
Length = 815
Score = 99.4 bits (246), Expect = 2e-22
Identities = 44/95 (46%), Positives = 55/95 (57%)
Frame = +1
Query: 8 SGSCQATGCGEDLNRRCPSELRVDGGDACNSACGAFGTPEYCCSGAFGSPSSCSPSVYSE 67
+G + C D+N +CPSEL+ GG CN+ C F T +YCC+ SC P+ YS
Sbjct: 409 NGCTRGISCTADINGQCPSELKTQGG--CNNPCTVFKTDQYCCNSG-----SCGPTDYSR 567
Query: 68 MFKSACPKSYSYAFDDATSTFTCTAADDYTITFCP 102
FK CP +YSY DD TSTFTC DY + FCP
Sbjct: 568 FFKQRCPDAYSYPKDDPTSTFTCNGGTDYRVVFCP 672
>TC226940 weakly similar to UP|Q93XD4 (Q93XD4) Thaumatin-like protein,
partial (87%)
Length = 865
Score = 95.5 bits (236), Expect = 3e-21
Identities = 43/94 (45%), Positives = 57/94 (59%), Gaps = 1/94 (1%)
Frame = +1
Query: 10 SCQATGCGEDLNRRCPSELRVDGGDACNSACGAFGTPEYCCS-GAFGSPSSCSPSVYSEM 68
+C + C D+ CP++L+V GG CN+ C F T +YCCS GA G C P+ YS+
Sbjct: 445 NCSSVKCAADIIGECPTQLQVPGG--CNNPCTVFNTTQYCCSTGAAG----CGPTDYSKF 606
Query: 69 FKSACPKSYSYAFDDATSTFTCTAADDYTITFCP 102
FK CP ++SY DDA+S FTC DY + FCP
Sbjct: 607 FKERCPDAFSYPMDDASSMFTCMGGSDYRLVFCP 708
>TC226941 weakly similar to UP|Q8LEV9 (Q8LEV9) Osmotin, partial (78%)
Length = 1047
Score = 94.7 bits (234), Expect = 6e-21
Identities = 45/94 (47%), Positives = 58/94 (60%), Gaps = 1/94 (1%)
Frame = +1
Query: 10 SCQATGCGEDLNRRCPSELRVDGGDACNSACGAFGTPEYCCS-GAFGSPSSCSPSVYSEM 68
+C + C D+ CP++L+V GG CN+ C F T +YCCS GA G C P+ YS+
Sbjct: 454 NCSSVKCAADIIGECPTQLQVPGG--CNNPCTVFNTTQYCCSTGAAG----CGPTDYSKF 615
Query: 69 FKSACPKSYSYAFDDATSTFTCTAADDYTITFCP 102
FK CP +YSY DDATS FTC + DY + FCP
Sbjct: 616 FKERCPDAYSYPMDDATSMFTCMGS-DYRVVFCP 714
>TC226775 homologue to UP|P21_SOYBN (P25096) P21 protein, partial (90%)
Length = 781
Score = 94.4 bits (233), Expect = 8e-21
Identities = 42/95 (44%), Positives = 55/95 (57%)
Frame = +3
Query: 8 SGSCQATGCGEDLNRRCPSELRVDGGDACNSACGAFGTPEYCCSGAFGSPSSCSPSVYSE 67
+G + C D+N +CPS+L+ GG CN+ C F T +YCC+ SC P+ YS
Sbjct: 438 NGCTRGIRCTADINGQCPSQLKTQGG--CNNPCTVFKTDQYCCNSG-----SCVPTDYSR 596
Query: 68 MFKSACPKSYSYAFDDATSTFTCTAADDYTITFCP 102
FK CP +YSY DD TSTFTC +Y + FCP
Sbjct: 597 FFKQRCPDAYSYPKDDPTSTFTCKGGTNYRVVFCP 701
>TC217170 homologue to UP|O81926 (O81926) Thaumatin-like protein PR-5b
precursor (Fragment), partial (45%)
Length = 554
Score = 85.9 bits (211), Expect = 3e-18
Identities = 41/82 (50%), Positives = 46/82 (56%)
Frame = +3
Query: 25 PSELRVDGGDACNSACGAFGTPEYCCSGAFGSPSSCSPSVYSEMFKSACPKSYSYAFDDA 84
P LR GG CN+ C F T EYCC+ GS C P+ YS FK C SYSY DD
Sbjct: 183 PGSLRAPGG--CNNPCTVFKTNEYCCTNGQGS---CGPTNYSRFFKDRCHDSYSYPQDDP 347
Query: 85 TSTFTCTAADDYTITFCPSSSP 106
TSTFTC A +Y + FCP P
Sbjct: 348 TSTFTCPAGSNYKVVFCPLGEP 413
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.130 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,728,831
Number of Sequences: 63676
Number of extensions: 107324
Number of successful extensions: 695
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of query: 107
length of database: 12,639,632
effective HSP length: 83
effective length of query: 24
effective length of database: 7,354,524
effective search space: 176508576
effective search space used: 176508576
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC121233.12