BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC119417.1 + phase: 0 /pseudo
(1553 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 141 2e-33
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 129 1e-29
AI959950 77 8e-14
TC232995 72 2e-12
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 69 2e-11
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 60 6e-11
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 52 3e-06
BM143109 49 2e-05
AI855982 41 0.005
AI966222 39 0.014
TC213445 36 0.15
CO983516 36 0.15
CO983154 35 0.33
BI425121 33 0.97
TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (F... 31 3.7
CO981945 30 6.3
BI497714 homologue to SP|P13890|POLS Structural polyprotein (P13... 30 8.2
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 141 bits (356), Expect = 2e-33
Identities = 138/469 (29%), Positives = 230/469 (48%)
Frame = +3
Query: 1040 LNN*A*NC*RSSLR*WMDISYARRAKSIPKE*CVGSGTQTLSEEHYWNKMGIQKQAE*TM 1099
L N*A C R + * +D YARR +I KE* +G+ + T W+++ +Q+Q +*
Sbjct: 3192 LQN*AQECERGTD**VLDQCYARRIGAIQKE*SLGASS*TRGN*CDWHQVDLQEQNQ*RR 3371
Query: 1100 RSNQKQSQTCCSRLQSTRRH*LH*NICSSCKIGSNQVTSILRN*SWHNIISNGCQKCLS* 1159
NQKQ QTCCSRL S R L *N C +Q+ + + +GC++ +S
Sbjct: 3372 CYNQKQGQTCCSRLHSD*RCRL**NFRPCC*T*VHQIVTWCSLHPQIQAVPDGCEERVSE 3551
Query: 1160 WCH*RRSVC*TTSWV*GS*AS*PCL*T*EITIWLETSSQSLV**TK*FLN*K*F*KRTS* 1219
W RS+C + S +S C+ E ++W+E SS+SLV* *+ +*
Sbjct: 3552 WIPE*RSLCGAAKGICRSNSSRSCIQAQEGSLWIEASSKSLV*KANRVPYSARV*EGRN* 3731
Query: 1220 HNTLQKDS*KRYFDCANIC**YNIWFY*CISLQRIL*VNAG*I*NEYDGRIEVLSWNSNQ 1279
++L + + D +IC**+ +W +A *I*+E R ++ S ++
Sbjct: 3732 QDSLCQTRC*KLDDSTDIC**HCVWRDVE*DASTFCPTDAI*I*DESCWRADLFSGTPSE 3911
Query: 1280 PK*RRSVCSSNKIYKGASEEVQARRL*SDEHPNASNLHLKQRRYWNSSRPEAIQRYDWFS 1339
R + + ++ K +EV + ++ +L +R W+ +++Q++DW
Sbjct: 3912 ADGRLHIPLTKQVCKEHCQEVWDGKCQP*KNTCTYSLEAVKR*SWHQC*SKSVQKHDWEL 4091
Query: 1340 VIPHCI*T*YFIQCMLVCKISIRS*RISFNCC*ENLQVSERNN*SWTPV*EIPRL*VDWI 1399
I + T*+ + +CKIS +S* S EN ++ + + * W V + R W+
Sbjct: 4092 TIFNS*QT*HHLCSRCLCKISSQS*DKSLESSKENSEICKWHQ*LWDYVLSLFRFNAGWV 4271
Query: 1400 L*C*LCW**D*KKINQWKLPIPRRESDILGKQKTSNYCYVYSRSRIHFSCKLLHTTTLDE 1459
L*C*L W *+K + W + + +S + +Q+ +Y SR++ S K L TT+LDE
Sbjct: 4272 L*C*LGWKCR*QKKHFWWMFLFGNQSYFMVQQEAELCVPIYC*SRVYCSRKQLFTTSLDE 4451
Query: 1460 TSIGRLSD*CQQYSHLL**YCCYLFVKESNSTFKIQAY*NQTPFYQRLC 1508
+ + + +L* + CY + +S ST + QA+*+ T Y R C
Sbjct: 4452 ADAEGVQCRTRCHDIVL*QHECY*YF*KSCSTQQNQAH*H*TSLY*RSC 4598
Score = 55.1 bits (131), Expect = 2e-07
Identities = 56/196 (28%), Positives = 97/196 (48%)
Frame = +3
Query: 722 C**LQQMDLGKIH*K*RLCM*SV*QLLHSNTI*KRIENFESQK*SWWRI*K*AI*TFL*K 781
C * Q+ LG+++ + +*S+ + + KR+ + E+Q+* W R+*K + L
Sbjct: 2334 CG*FLQIYLGQLYQREIRHL*SIQGVESKTSKRKRLCHQENQE*PWQRV*KQQVY*ILHI 2513
Query: 782 TWDSP*VFFS*NSTTKWGCREKEQNLTRNGQNHDP*KQLS*TFLGRSSQYFMLYSK*DLY 841
*V S +TTKW +++Q+ R+ H ++ S LG S ++ ML+ +
Sbjct: 2514 *RHHS*VLCSHYTTTKWHS*KEKQDFARSC*GHASCQRTSL*SLG*SHEHSMLHPQQSHT 2693
Query: 842 QTYVGENSI*TL*RKKTQYLLLSSVWMYLLHLKH*RLSEEI*CQGSKRNLFRLL*KVKGI 901
+++* L R++ L +W +LH *R E+ Q RN+ +L K + I
Sbjct: 2694 *KRDSNHTV*NLEREEANCQALPHLWKSMLHFGR*RAKEKDGSQE*CRNILGILYKQQSI 2873
Query: 902 *SV*FRNTMC*RIYAC 917
*S+ F+N C I+ C
Sbjct: 2874 *SIQFQNQNCDGIHQC 2921
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 129 bits (324), Expect = 1e-29
Identities = 134/469 (28%), Positives = 227/469 (47%)
Frame = +3
Query: 1040 LNN*A*NC*RSSLR*WMDISYARRAKSIPKE*CVGSGTQTLSEEHYWNKMGIQKQAE*TM 1099
L N*A C R + R* +D YARR +I KE* +G+ + W+++ +Q+Q +*
Sbjct: 3189 LQN*AQECERGTDR*VLDQCYARRIGAIQKE*SLGASS*A*GN*CDWHQVDLQEQNQ*RR 3368
Query: 1100 RSNQKQSQTCCSRLQSTRRH*LH*NICSSCKIGSNQVTSILRN*SWHNIISNGCQKCLS* 1159
NQKQ QT CSRL S R L *+ C SC +Q+ + + +GC++ +S
Sbjct: 3369 CHNQKQGQTGCSRLHSD*RCRL**DFCPSC*T*VHQIITWCSLYPQIQAVPDGCEERISE 3548
Query: 1160 WCH*RRSVC*TTSWV*GS*AS*PCL*T*EITIWLETSSQSLV**TK*FLN*K*F*KRTS* 1219
W RS+C + +S C+ E ++W+E SS+SLV* *+ +*
Sbjct: 3549 WIPE*RSLCGAAKGICRPDSSRSCIQAQEGSLWIEASSKSLV*KANRVPYSARV*EGRN* 3728
Query: 1220 HNTLQKDS*KRYFDCANIC**YNIWFY*CISLQRIL*VNAG*I*NEYDGRIEVLSWNSNQ 1279
+ L + + DC +IC**+ +W +A *I*+E R ++ S S++
Sbjct: 3729 QDPLCQTRC*KLDDCTDIC**HCVWRDVE*DASTFCSTDAI*I*DESCWRADLFSGTSSE 3908
Query: 1280 PK*RRSVCSSNKIYKGASEEVQARRL*SDEHPNASNLHLKQRRYWNSSRPEAIQRYDWFS 1339
+ + ++ K +EV S + +L + + +++Q++D
Sbjct: 3909 ADGGLHIPLTKQVCKEHCQEVWDGECQS*KDTCTYSLEAVKG*SRHQC*SKSVQKHDREL 4088
Query: 1340 VIPHCI*T*YFIQCMLVCKISIRS*RISFNCC*ENLQVSERNN*SWTPV*EIPRL*VDWI 1399
I + T + + +CKIS +S S + EN ++ + + * W V + + W+
Sbjct: 4089 TIFNS*QTRHHLCSRCLCKISSQSQDKSLDSSKENSEICKWH**LWDYVLSLFKSNAGWV 4268
Query: 1400 L*C*LCW**D*KKINQWKLPIPRRESDILGKQKTSNYCYVYSRSRIHFSCKLLHTTTLDE 1459
L*C*L W *+K + W + + ++ + +Q+ +YSRSR++ S K L T +LDE
Sbjct: 4269 L*C*LGWKCR*QKKHFWWMLLFGKQPYFMVQQEAELCVPIYSRSRVYCSRKQLFTASLDE 4448
Query: 1460 TSIGRLSD*CQQYSHLL**YCCYLFVKESNSTFKIQAY*NQTPFYQRLC 1508
+ + + +L* + CY + +S ST + QA+*+ T YQR C
Sbjct: 4449 ADAEGVQCRTRCHDIVL*QHECY*YF*KSCSTQQNQAH*H*TSLYQRSC 4595
Score = 53.1 bits (126), Expect = 9e-07
Identities = 56/196 (28%), Positives = 97/196 (48%)
Frame = +3
Query: 722 C**LQQMDLGKIH*K*RLCM*SV*QLLHSNTI*KRIENFESQK*SWWRI*K*AI*TFL*K 781
C * Q+ LGK++ + +*S+ ++ + +R+ + E+Q+* W RI*K + L
Sbjct: 2331 CG*FLQIYLGKLYQREIRNL*SIQRVESKTSKRERLCHQENQE*PWQRI*KQQVH*ILHI 2510
Query: 782 TWDSP*VFFS*NSTTKWGCREKEQNLTRNGQNHDP*KQLS*TFLGRSSQYFMLYSK*DLY 841
*V S +TT+W E++Q+ R H ++ S LG S ++ ML+ +
Sbjct: 2511 *RHHS*VLCSHYTTTEWDS*EEKQDFARGCSGHASCQRTSL*SLG*SHEHSMLHPQQSHT 2690
Query: 842 QTYVGENSI*TL*RKKTQYLLLSSVWMYLLHLKH*RLSEEI*CQGSKRNLFRLL*KVKGI 901
+ + +* L R++ L +W +LHL *R ++ Q RN+ +L K + I
Sbjct: 2691 EKRDSNHPV*NLEREEAICQALPHLWKSMLHLGR*RAKKKDGSQE*CRNIPGILYKQQSI 2870
Query: 902 *SV*FRNTMC*RIYAC 917
*S+ F+N I+ C
Sbjct: 2871 *SIQFQNQNSDGIHQC 2918
>AI959950
Length = 466
Score = 76.6 bits (187), Expect = 8e-14
Identities = 48/128 (37%), Positives = 72/128 (55%)
Frame = -3
Query: 1059 SYARRAKSIPKE*CVGSGTQTLSEEHYWNKMGIQKQAE*TMRSNQKQSQTCCSRLQSTRR 1118
S ARR S+ KE*C+ + T +E W++M I Q + QS+ C RL +T R
Sbjct: 392 SDARRT*SVSKE*CLEAR*ITKKKEGSWSEMDIL*QTRRGW*GCEIQSKISC*RLLTTGR 213
Query: 1119 H*LH*NICSSCKIGSNQVTSILRN*SWHNIISNGCQKCLS*WCH*RRSVC*TTSWV*GS* 1178
+ L N+C+ C SN + + N + ++SNGC+KC+S W + + S+C*TT+W+*
Sbjct: 212 YRLPKNLCTCCTFRSNMHLTFICNL**YEVVSNGCKKCISKWLNPKGSLC*TTAWI*K*N 33
Query: 1179 AS*PCL*T 1186
S C *T
Sbjct: 32 PSSTCF*T 9
>TC232995
Length = 1009
Score = 72.0 bits (175), Expect = 2e-12
Identities = 61/169 (36%), Positives = 90/169 (53%)
Frame = +1
Query: 1169 *TTSWV*GS*AS*PCL*T*EITIWLETSSQSLV**TK*FLN*K*F*KRTS*HNTLQKDS* 1228
*TT W * * + PCL* + ++W ETS +V* K*F +*K +R S ++ + K+
Sbjct: 4 *TTPWF*NF**TKPCL*ITKGSLWFETSP*GMV*TIK*FSS*KRILQR*SGYHIIHKEKA 183
Query: 1229 KRYFDCANIC**YNIWFY*CISLQRIL*VNAG*I*NEYDGRIEVLSWNSNQPK*RRSVCS 1288
YF +NIC**YN W +* +Q + A *I*N DGR +VLS +NQ R +
Sbjct: 184 **YFVGSNIC**YNFWIH**FIVQGVFP*YAK*I*NVNDGRTKVLSGITNQANSIRYIHQ 363
Query: 1289 SNKIYKGASEEVQARRL*SDEHPNASNLHLKQRRYWNSSRPEAIQRYDW 1337
S +I +G +++ + + + L L+ R W+ R + I R W
Sbjct: 364 SIQILQGIDQKIWDG*CKTHVYTDEH*LLLR*R*IWSVYRHKTISRCYW 510
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 68.6 bits (166), Expect = 2e-11
Identities = 59/150 (39%), Positives = 80/150 (53%), Gaps = 2/150 (1%)
Frame = -2
Query: 1060 YARRAKSIPKE*CVGSGTQTLSEEHYWNKMGIQKQAE*TMRSNQKQSQTCCSRLQSTRRH 1119
+ARR +SI K+*CV + +T + NKMG K *T + K R+ S R +
Sbjct: 456 HARRTESI*KK*CVETSRKT*KLSCHRNKMGF*K*IR*TWHNY*K*G*ISSKRV*SRRGN 277
Query: 1120 *LH*NICSSCKIGS--NQVTSILRN*SWHNIISNGCQKCLS*WCH*RRSVC*TTSWV*GS 1177
L NICSSCKI S N + + N +SNGC KC S W + RRS+C*TT +*
Sbjct: 276 RL*RNICSSCKIRSH*NAFSICIHN--EF*TLSNGC*KCFSKWFNSRRSIC*TTPRL*NP 103
Query: 1178 *AS*PCL*T*EITIWLETSSQSLV**TK*F 1207
+ CL* + ++W +TS +V* K F
Sbjct: 102 G*TNSCL*IAKGSLWFKTSP*GVV*TYKQF 13
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 60.1 bits (144), Expect(2) = 6e-11
Identities = 63/176 (35%), Positives = 92/176 (51%)
Frame = +2
Query: 1237 IC**YNIWFY*CISLQRIL*VNAG*I*NEYDGRIEVLSWNSNQPK*RRSVCSSNKIYKGA 1296
+C**+N+W +Q + *VN G I*NEY+ +V SN + S +IYK
Sbjct: 503 LC**HNLWCNLKKDVQGVF*VNEGWI*NEYER*AKVPPRTSNHSESLWDFYPSREIYKVP 682
Query: 1297 SEEVQARRL*SDEHPNASNLHLKQRRYWNSSRPEAIQRYDWFSVIPHCI*T*YFIQCMLV 1356
S++VQ + +P AS + Q S + + YD F +I + *T Y + + +
Sbjct: 683 SKKVQNG*SQTYGNPYASFHNH*QG*ER*SYFIKGV*WYD*FFIIFNF**TRYCVCRLPL 862
Query: 1357 CKISIRS*RISFNCC*ENLQVSERNN*SWTPV*EIPRL*VDWIL*C*LCW**D*KK 1412
CKIS+ S S C *++L++S N *S + V*E +* IL*C CW** K+
Sbjct: 863 CKISVLSKNFSCYCS*KDLKISCWNY*SLSMV*EKV*V*SFRIL*CLFCW**SRKE 1030
Score = 26.9 bits (58), Expect(2) = 6e-11
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 1191 IWLETSSQSLV**TK*FLN*K*F*KRTS*HNTLQKDS*KRYF 1232
+W ETSS+SLV* K + K +R + T+QK S ++ F
Sbjct: 364 LWFETSSKSLV*KAKFISSFKWIHQRNNGPRTIQKGSKRKPF 489
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 51.6 bits (122), Expect = 3e-06
Identities = 37/86 (43%), Positives = 46/86 (53%)
Frame = +2
Query: 1049 RSSLR*WMDISYARRAKSIPKE*CVGSGTQTLSEEHYWNKMGIQKQAE*TMRSNQKQSQT 1108
RS R* +D +ARR K I K+ C+ +T YWNKMG K *T + K SQ
Sbjct: 20 RSHSR**LDHCHARRTKPI*KKQCMEISRKT*KLSCYWNKMGF*K*IR*TWYNY*K*SQV 199
Query: 1109 CCSRLQSTRRH*LH*NICSSCKIGSN 1134
R+ S R + L NICS CKI S+
Sbjct: 200 SSERI*SRRGNRL*RNICSCCKIRSH 277
>BM143109
Length = 415
Score = 48.5 bits (114), Expect = 2e-05
Identities = 43/121 (35%), Positives = 62/121 (50%)
Frame = +3
Query: 1180 S*PCL*T*EITIWLETSSQSLV**TK*FLN*K*F*KRTS*HNTLQKDS*KRYFDCANIC* 1239
+* CL*T + IW++TS LV* +* + F KR *+ + Y +IC*
Sbjct: 33 A*SCL*TEKGFIWIKTSP*GLV*TFE*ISFRQGFFKR*G*Y*PFYLKEIE*YTLSTDIC* 212
Query: 1240 *YNIWFY*CISLQRIL*VNAG*I*NEYDGRIEVLSWNSNQPK*RRSVCSSNKIYKGASEE 1299
*Y WF * SLQ+I A *I*N D +++ SW +NQ ++ S KI + +
Sbjct: 213 *YYFWFN**FSLQKIFSRYAK*I*NVNDA*VKLFSWTTNQANKEWNIYQSIKILQRPDSQ 392
Query: 1300 V 1300
+
Sbjct: 393 I 395
>AI855982
Length = 484
Score = 40.8 bits (94), Expect = 0.005
Identities = 43/123 (34%), Positives = 60/123 (47%)
Frame = +1
Query: 1049 RSSLR*WMDISYARRAKSIPKE*CVGSGTQTLSEEHYWNKMGIQKQAE*TMRSNQKQSQT 1108
RS R* +D +ARR +SI K+*CV + +T + NKMG+ K *T + T
Sbjct: 115 RSHSR**LDNCHARRTESI*KK*CVETSRKT**LSCHMNKMGL*K*IR*TSHNYYT*G*T 294
Query: 1109 CCSRLQSTRRH*LH*NICSSCKIGSNQVTSILRN*SWHNIISNGCQKCLS*WCH*RRSVC 1168
RL S+RR L IC C I S+ I+ + +S KC + W S+C
Sbjct: 295 SSRRL*SSRRTRL*TYICFYC*IISHYNAFIICIHNEFYTLSLCMCKCSTSWPTPT*SLC 474
Query: 1169 *TT 1171
*+T
Sbjct: 475 *ST 483
>AI966222
Length = 430
Score = 39.3 bits (90), Expect = 0.014
Identities = 24/66 (36%), Positives = 41/66 (61%)
Frame = +3
Query: 810 NGQNHDP*KQLS*TFLGRSSQYFMLYSK*DLYQTYVGENSI*TL*RKKTQYLLLSSVWMY 869
+G NH * * LG S++Y ML S+ +LY+T++ ++S+* + KTQ+++ S +
Sbjct: 3 DG*NHAK**LNP*ALLG*SNEYCMLSSEQNLYKTHLEKDSL*IMEGTKTQHIIFLSF*V* 182
Query: 870 LLHLKH 875
+ H KH
Sbjct: 183 VFHYKH 200
>TC213445
Length = 705
Score = 35.8 bits (81), Expect = 0.15
Identities = 28/76 (36%), Positives = 40/76 (51%)
Frame = +3
Query: 1425 SDILGKQKTSNYCYVYSRSRIHFSCKLLHTTTLDETSIGRLSD*CQQYSHLL**YCCYLF 1484
S I+ K C + RSRI+F KLL T LDET+ L Y++ +* Y C
Sbjct: 450 SSIMA**KAK*CCLINCRSRIYFC*KLLCTNLLDETTTF*LWFET*SYTYPM*QYKCN*S 629
Query: 1485 VKESNSTFKIQAY*NQ 1500
+++S S +AY*N+
Sbjct: 630 IQKSYSVL*NKAY*NK 677
>CO983516
Length = 724
Score = 35.8 bits (81), Expect = 0.15
Identities = 28/96 (29%), Positives = 50/96 (51%)
Frame = +1
Query: 1149 ISNGCQKCLS*WCH*RRSVC*TTSWV*GS*AS*PCL*T*EITIWLETSSQSLV**TK*FL 1208
+ +GC++ +S W RS+C + S +S C+ E ++W+E SS+SLV*
Sbjct: 436 VPDGCEERVSEWIPE*RSLCGAAKGIYRSNSSRSCIQAQEGSLWIEASSKSLV*KANRVT 615
Query: 1209 N*K*F*KRTS*HNTLQKDS*KRYFDCANIC**YNIW 1244
*+ +* ++L + + D +IC**+ +W
Sbjct: 616 YSARV*EGRN*QDSLCQTRC*KLDDSTDIC**HCVW 723
>CO983154
Length = 568
Score = 34.7 bits (78), Expect = 0.33
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 793 NSTTKWGCREKEQNLTRNGQNHDP*KQLS*TFLGRSSQYFMLYSK*DLYQTYVGENSI*T 852
++TTKW CR++E + + N + + S T LGR YF+ +K D + NS T
Sbjct: 5 HTTTKWYCRKEESSSS*NCTLPNAKFECSDTSLGRCGAYFLFPNKSDAFFFS*KPNSSLT 184
Query: 853 L*RKKTQYLLLS-SVWMYL 870
+ LS SVW+YL
Sbjct: 185 CLSS*SFISCLS*SVWLYL 241
>BI425121
Length = 412
Score = 33.1 bits (74), Expect = 0.97
Identities = 27/86 (31%), Positives = 44/86 (50%)
Frame = +2
Query: 778 FL*KTWDSP*VFFS*NSTTKWGCREKEQNLTRNGQNHDP*KQLS*TFLGRSSQYFMLYSK 837
FL*K W *+ + N + K G +++ N R G +H S + +L SK
Sbjct: 197 FL*KEWYFS*LVLTENPSRK*GS*KEK*NFARKG*DH--------------SFHNLLCSK 334
Query: 838 *DLYQTYVGENSI*TL*RKKTQYLLL 863
++ +T ++S+*T+ RKKT Y +L
Sbjct: 335 QNIDKTNDKKDSL*TMERKKTHYFIL 412
>TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (Fragment),
partial (16%)
Length = 562
Score = 31.2 bits (69), Expect = 3.7
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +3
Query: 1271 EVLSWNSNQPK*RRSVCSSNKIYKGASEEVQARRL*SDEHPNASNLHLKQRRYWNSSRPE 1330
++ SWN +Q K +SV S +I K EEV + H N S ++Q R +
Sbjct: 309 DLFSWN*DQAKSEQSVNLSKEICKRNFEEVSNGGMQIC*HTNESKGEVQQGRRC**N**R 488
Query: 1331 AIQRYDWFSVIPHC 1344
+ DW S + HC
Sbjct: 489 IL*ELDWMSNVSHC 530
>CO981945
Length = 584
Score = 30.4 bits (67), Expect = 6.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 1412 KINQWKLPIPRRESDILGKQKTSNYCYVYSRSRI 1445
KIN W + +P ESD++ ++ C +Y RSRI
Sbjct: 441 KINIWGMHLP*PESDLMVVKEADLDCLLYCRSRI 340
>BI497714 homologue to SP|P13890|POLS Structural polyprotein (P130) [Contains:
Coat protein C (EC 3.4.21.-) (Capsid protein C); Spike,
partial (1%)
Length = 433
Score = 30.0 bits (66), Expect = 8.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 1291 KIYKGASEEVQARRL*SDEHPNASNLHLKQRRYWNSSR 1328
KI + A++EVQ + DE N NL ++ +RY N +
Sbjct: 98 KIQRRATDEVQENKKIIDERENHKNLSVQDKRYCNMEK 211
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.386 0.173 0.716
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,313,887
Number of Sequences: 63676
Number of extensions: 890077
Number of successful extensions: 16896
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 3505
Number of HSP's successfully gapped in prelim test: 451
Number of HSP's that attempted gapping in prelim test: 13022
Number of HSP's gapped (non-prelim): 4739
length of query: 1553
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1443
effective length of database: 5,635,272
effective search space: 8131697496
effective search space used: 8131697496
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 13 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 34 (21.5 bits)
S2: 65 (29.6 bits)
Medicago: description of AC119417.1