BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC119412.1 - phase: 0
(411 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW707131 homologue to GP|2281647|gb|A AP2 domain containing prot... 112 2e-25
BE021213 homologue to GP|2281647|gb|A AP2 domain containing prot... 112 3e-25
TC209957 similar to UP|PZ02_LUPPO (P16146) PPLZ02 protein, parti... 87 2e-17
BG510279 homologue to GP|18650662|gb| ethylene response factor 1... 85 5e-17
TC207981 similar to UP|PTI6_LYCES (O04682) Pathogenesis-related ... 85 5e-17
TC231506 similar to UP|PTI6_LYCES (O04682) Pathogenesis-related ... 85 7e-17
TC228091 similar to GB|AAM52243.1|21464577|AY120700 AT4g34410/F1... 84 9e-17
TC214297 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive eleme... 84 1e-16
TC207982 similar to UP|Q8CBH3 (Q8CBH3) Mus musculus 16 days neon... 83 2e-16
TC226092 homologue to UP|ERF3_ARATH (O80339) Ethylene responsive... 83 2e-16
TC204035 homologue to UP|ERF4_ARATH (O80340) Ethylene responsive... 83 3e-16
TC219340 homologue to UP|ERF4_ARATH (O80340) Ethylene responsive... 83 3e-16
CF806953 83 3e-16
TC226783 similar to UP|ERF3_ARATH (O80339) Ethylene responsive e... 82 3e-16
TC225579 similar to UP|Q84KS7 (Q84KS7) AP2/ERF-domain protein, p... 82 4e-16
TC226782 homologue to UP|ERF3_ARATH (O80339) Ethylene responsive... 82 4e-16
TC211406 similar to GB|AAL09709.1|15982737|AY057475 AT4g23750/F9... 82 6e-16
AW705973 similar to PIR|B86288|B862 F9L1.31 protein - Arabidopsi... 82 6e-16
TC221817 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {A... 80 1e-15
BE020121 80 2e-15
>AW707131 homologue to GP|2281647|gb|A AP2 domain containing protein RAP2.11
{Arabidopsis thaliana}, partial (22%)
Length = 397
Score = 112 bits (281), Expect = 2e-25
Identities = 59/100 (59%), Positives = 74/100 (74%), Gaps = 5/100 (5%)
Frame = -2
Query: 22 MKEAASLGGARRVRK-----RFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARA 76
++ + S GG R ++VGVRQR SG+WVAEIKDT QKIR+WLGT++TAEEAARA
Sbjct: 378 LRASTSKGGTGRYNNNTTTSKYVGVRQRASGKWVAEIKDTTQKIRMWLGTYETAEEAARA 199
Query: 77 YDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQR 116
YDEAACLLRG+NTRTNF ++ S L+S+I NL+ R
Sbjct: 198 YDEAACLLRGSNTRTNF--ITRVSLDSPLASRIQNLVNNR 85
>BE021213 homologue to GP|2281647|gb|A AP2 domain containing protein RAP2.11
{Arabidopsis thaliana}, partial (22%)
Length = 405
Score = 112 bits (280), Expect = 3e-25
Identities = 52/57 (91%), Positives = 56/57 (98%)
Frame = +1
Query: 37 RFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNF 93
+FVGVRQRPSGRWVAEIKDT QKIR+WLGTF+TAEEAARAYDEAACLLRG+NTRTNF
Sbjct: 226 KFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNF 396
>TC209957 similar to UP|PZ02_LUPPO (P16146) PPLZ02 protein, partial (86%)
Length = 812
Score = 86.7 bits (213), Expect = 2e-17
Identities = 60/140 (42%), Positives = 79/140 (55%), Gaps = 23/140 (16%)
Frame = +3
Query: 33 RVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTN 92
R R GVRQR G WV+EI+ I K R+WLGTF+TAE+AARAYDEAA L+ G RTN
Sbjct: 30 RSXXRXXGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTN 209
Query: 93 F---WPCSQSSTSPALSSKITNLL------------------LQRLKERN-MNNSCSSFS 130
F SQSS+S LS+ +T L QR+ N + +S S+FS
Sbjct: 210 FPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSSQAEPQRVASPNVITSSASNFS 389
Query: 131 -SSKYTSLLGSPEERREQQR 149
S T L P++R+E+++
Sbjct: 390 MKSNETETLLLPQKRQEEEQ 449
>BG510279 homologue to GP|18650662|gb| ethylene response factor 1
{Lycopersicon esculentum}, partial (44%)
Length = 418
Score = 85.1 bits (209), Expect = 5e-17
Identities = 46/79 (58%), Positives = 56/79 (70%), Gaps = 5/79 (6%)
Frame = +2
Query: 37 RFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNF--- 93
R+ GVRQR G WV+EI+ I K R+WLGTF+TAE+AARAYDEAA L+ GA RTNF
Sbjct: 2 RYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFN 181
Query: 94 --WPCSQSSTSPALSSKIT 110
P S SS+S LS+ +T
Sbjct: 182 PNVPHSSSSSSKLLSATLT 238
>TC207981 similar to UP|PTI6_LYCES (O04682) Pathogenesis-related genes
transcriptional activator PTI6, partial (25%)
Length = 925
Score = 85.1 bits (209), Expect = 5e-17
Identities = 54/121 (44%), Positives = 69/121 (56%), Gaps = 2/121 (1%)
Frame = +3
Query: 23 KEAASLGGARRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAAC 82
K S ARR R +F GVRQRP GRW AEI+D ++ R+WLGTFDTAEEAA YD AA
Sbjct: 183 KPPPSSAEARR-RNKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDRAAV 359
Query: 83 LLRGANTRTNFWPCSQSST--SPALSSKITNLLLQRLKERNMNNSCSSFSSSKYTSLLGS 140
L+G N TNF P + +T SP L++ ++ SS + Y+ L+ S
Sbjct: 360 KLKGPNAVTNF-PLAPEATAQSPPLAA----------------DNLSSDGGASYSDLVAS 488
Query: 141 P 141
P
Sbjct: 489 P 491
>TC231506 similar to UP|PTI6_LYCES (O04682) Pathogenesis-related genes
transcriptional activator PTI6, partial (29%)
Length = 934
Score = 84.7 bits (208), Expect = 7e-17
Identities = 41/61 (67%), Positives = 46/61 (75%)
Frame = +1
Query: 33 RVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTN 92
R R +F GVRQRP GRW AEI+D Q+ RVWLGTFDTAEEAA YD+AA L+G N TN
Sbjct: 577 RRRSKFRGVRQRPWGRWTAEIRDPNQRKRVWLGTFDTAEEAAAVYDDAALKLKGPNAVTN 756
Query: 93 F 93
F
Sbjct: 757 F 759
>TC228091 similar to GB|AAM52243.1|21464577|AY120700 AT4g34410/F10M10_180
{Arabidopsis thaliana;} , partial (30%)
Length = 1025
Score = 84.3 bits (207), Expect = 9e-17
Identities = 48/138 (34%), Positives = 71/138 (50%)
Frame = +1
Query: 32 RRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRT 91
+R +K++ GVRQRP G+W AEI+D + RVWLGTF TAE+AARAYD+AA RG +
Sbjct: 340 KRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFGTAEDAARAYDKAAIEFRGPRAKL 519
Query: 92 NFWPCSQSSTSPALSSKITNLLLQRLKERNMNNSCSSFSSSKYTSLLGSPEERREQQRAN 151
NF +S T + +++K N+N S ++ R N
Sbjct: 520 NFPLVDESLTLQQSEPERVQTEEEQIKTENLNQGMEMDSFGN--------KDTEFWDRIN 675
Query: 152 DHDRQEMQQQVDAYGEVS 169
+ D ++ +D G+ S
Sbjct: 676 EADFHQLMMMMDFAGDSS 729
>TC214297 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive element binding
factor 4-like protein, partial (51%)
Length = 996
Score = 84.0 bits (206), Expect = 1e-16
Identities = 52/113 (46%), Positives = 67/113 (59%)
Frame = +3
Query: 38 FVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCS 97
F GVR+RP GR+ AEI+D +K RVWLGTFDTAE+AARAYD AA RG +TNF
Sbjct: 123 FRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEDAARAYDVAARNFRGPKAKTNF---- 290
Query: 98 QSSTSPALSSKITNLLLQRLKERNMNNSCSSFSSSKYTSLLGSPEERREQQRA 150
P L TN+ L ++N N + S S S+ +++ S ER +RA
Sbjct: 291 -----PFLPDNNTNV---NLNKKNNNVNVKSDSPSQSSTVESSTPEREFTRRA 425
>TC207982 similar to UP|Q8CBH3 (Q8CBH3) Mus musculus 16 days neonate
cerebellum cDNA, RIKEN full-length enriched library,
clone:9630027A13 product:RAB5A, member RAS oncogene
family, full insert sequence. (Fragment), partial (6%)
Length = 770
Score = 83.2 bits (204), Expect = 2e-16
Identities = 43/81 (53%), Positives = 53/81 (65%)
Frame = +2
Query: 32 RRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRT 91
RR +F GVRQRP GRW AEI+D ++ R+WLGTFDTAEEAA YD AA L+G N T
Sbjct: 494 RRRNNKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDRAAVKLKGPNAVT 673
Query: 92 NFWPCSQSSTSPALSSKITNL 112
NF P + + + A + NL
Sbjct: 674 NF-PLTPEAAAEAPVVSVDNL 733
>TC226092 homologue to UP|ERF3_ARATH (O80339) Ethylene responsive element
binding factor 3 (AtERF3), partial (48%)
Length = 884
Score = 83.2 bits (204), Expect = 2e-16
Identities = 41/73 (56%), Positives = 52/73 (71%)
Frame = +3
Query: 25 AASLGGARRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLL 84
A + G+ R+ GVR+RP GR+ AEI+D ++K RVWLGTFD+AE+AARAYD AA L
Sbjct: 300 AVDVNGSILKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEDAARAYDAAARTL 479
Query: 85 RGANTRTNFWPCS 97
RG +TNF P S
Sbjct: 480 RGPKAKTNFPPLS 518
>TC204035 homologue to UP|ERF4_ARATH (O80340) Ethylene responsive element
binding factor 4 (AtERF4), partial (37%)
Length = 1004
Score = 82.8 bits (203), Expect = 3e-16
Identities = 43/67 (64%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Frame = +1
Query: 29 GGARRVRK--RFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRG 86
GG+ RK R+ GVR+RP GR+ AEI+D +K RVWLGTFDTAEEAARAYD AA RG
Sbjct: 199 GGSNPTRKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRG 378
Query: 87 ANTRTNF 93
A +TNF
Sbjct: 379 AKAKTNF 399
>TC219340 homologue to UP|ERF4_ARATH (O80340) Ethylene responsive element
binding factor 4 (AtERF4), partial (42%)
Length = 875
Score = 82.8 bits (203), Expect = 3e-16
Identities = 42/73 (57%), Positives = 53/73 (72%)
Frame = +2
Query: 37 RFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPC 96
R+ GVR+RP GR+ AEI+D +K RVWLGTFDTAEEAARAYD AA RG +TNF
Sbjct: 134 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGTKAKTNFPTH 313
Query: 97 SQSSTSPALSSKI 109
+ ++ SP+ SS +
Sbjct: 314 AAAARSPSQSSTL 352
>CF806953
Length = 666
Score = 82.8 bits (203), Expect = 3e-16
Identities = 41/65 (63%), Positives = 47/65 (72%)
Frame = +3
Query: 29 GGARRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGAN 88
GG R R+R+ GVRQRP G+W AEI+D + RVWLGTFDTAE AARAYDEAA RG
Sbjct: 369 GGGER-RRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNR 545
Query: 89 TRTNF 93
+ NF
Sbjct: 546 AKLNF 560
>TC226783 similar to UP|ERF3_ARATH (O80339) Ethylene responsive element
binding factor 3 (AtERF3), partial (48%)
Length = 1287
Score = 82.4 bits (202), Expect = 3e-16
Identities = 39/58 (67%), Positives = 47/58 (80%)
Frame = +2
Query: 36 KRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNF 93
+R+ GVR+RP GR+ AEI+D ++K RVWLGTFDTAEEAARAYD AA LRG +TNF
Sbjct: 524 QRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDTAARTLRGPKAKTNF 697
>TC225579 similar to UP|Q84KS7 (Q84KS7) AP2/ERF-domain protein, partial (31%)
Length = 1156
Score = 82.0 bits (201), Expect = 4e-16
Identities = 52/136 (38%), Positives = 72/136 (52%)
Frame = +2
Query: 25 AASLGGARRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLL 84
A G R + + G+RQRP G+W AEI+D + +RVWLGTF TAEEAARAYD+AA +
Sbjct: 338 AEKKSGGRARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDDAAKRI 517
Query: 85 RGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNMNNSCSSFSSSKYTSLLGSPEER 144
RG + NF +T+P S K QR + SS SS T GSP
Sbjct: 518 RGDKAKLNF-----PATAPPPSKK------QRCLSPDTTTEQSS-SSQSTTGSTGSPPSA 661
Query: 145 REQQRANDHDRQEMQQ 160
++ D +++++
Sbjct: 662 AFHGGGDELDLKQLER 709
>TC226782 homologue to UP|ERF3_ARATH (O80339) Ethylene responsive element
binding factor 3 (AtERF3), partial (48%)
Length = 1194
Score = 82.0 bits (201), Expect = 4e-16
Identities = 39/57 (68%), Positives = 46/57 (80%)
Frame = +3
Query: 37 RFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNF 93
R+ GVR+RP GR+ AEI+D ++K RVWLGTFDTAEEAARAYD AA LRG +TNF
Sbjct: 414 RYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDTAARTLRGPKAKTNF 584
>TC211406 similar to GB|AAL09709.1|15982737|AY057475 AT4g23750/F9D16_220
{Arabidopsis thaliana;} , partial (24%)
Length = 1012
Score = 81.6 bits (200), Expect = 6e-16
Identities = 37/58 (63%), Positives = 46/58 (78%)
Frame = +2
Query: 36 KRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNF 93
K+F GVRQRP G+W AEI+D +++R+WLGT+DTAEEAA YD AA LRGA+ TNF
Sbjct: 419 KKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNF 592
>AW705973 similar to PIR|B86288|B862 F9L1.31 protein - Arabidopsis thaliana,
partial (46%)
Length = 411
Score = 81.6 bits (200), Expect = 6e-16
Identities = 44/92 (47%), Positives = 63/92 (67%), Gaps = 8/92 (8%)
Frame = +3
Query: 36 KRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWP 95
++F GVRQR G WV+EI+ + K RVWLGTF+TAEEAARAYDEAA L+ G N +TNF P
Sbjct: 102 RKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNF-P 278
Query: 96 CSQ--------SSTSPALSSKITNLLLQRLKE 119
+ S+TS + ++ ++ +L +L++
Sbjct: 279 VGENQIVGNHSSNTSSSSTTTLSAVLSAKLRK 374
>TC221817 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;} , partial (24%)
Length = 1008
Score = 80.5 bits (197), Expect = 1e-15
Identities = 36/59 (61%), Positives = 45/59 (76%)
Frame = +1
Query: 35 RKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNF 93
R+++ GVRQRP G+W AEI+D + RVWLGTF+TAE AARAYDEAA RG+ + NF
Sbjct: 505 RRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGSKAKLNF 681
>BE020121
Length = 289
Score = 79.7 bits (195), Expect = 2e-15
Identities = 38/61 (62%), Positives = 47/61 (76%)
Frame = +3
Query: 33 RVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTN 92
R ++R+ GVRQR G WV+EI+ I K R+WLGTF+TAE+AARAYDEAA L+ G RTN
Sbjct: 90 RSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTN 269
Query: 93 F 93
F
Sbjct: 270 F 272
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.127 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,826,182
Number of Sequences: 63676
Number of extensions: 215852
Number of successful extensions: 1521
Number of sequences better than 10.0: 217
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of query: 411
length of database: 12,639,632
effective HSP length: 100
effective length of query: 311
effective length of database: 6,272,032
effective search space: 1950601952
effective search space used: 1950601952
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC119412.1