BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC119408.8 + phase: 0
(908 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC217953 similar to UP|Q9FHH9 (Q9FHH9) DNA-binding protein-like,... 547 e-156
TC220288 similar to UP|Q9FHH9 (Q9FHH9) DNA-binding protein-like,... 149 5e-36
BM187780 91 2e-18
TC234937 similar to UP|Q9FHH9 (Q9FHH9) DNA-binding protein-like,... 60 4e-09
TC205762 weakly similar to UP|Q9LNV4 (Q9LNV4) F22G5.31, partial ... 50 6e-06
TC217954 49 1e-05
TC216023 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F2... 45 3e-05
TC216024 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F2... 46 6e-05
TC213615 similar to UP|Q9SUL7 (Q9SUL7) SNF1 like protein kinase ... 45 1e-04
TC213885 weakly similar to UP|Q9VUB7 (Q9VUB7) CG32133-PA, partia... 45 2e-04
BF424438 44 2e-04
TC219663 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD pro... 44 2e-04
TC205461 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MS... 44 2e-04
TC222812 43 5e-04
TC219166 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD pro... 43 5e-04
TC212455 weakly similar to UP|Q7QIA8 (Q7QIA8) AgCP3984 (Fragment... 43 5e-04
TC206441 43 5e-04
TC218783 similar to UP|Q40363 (Q40363) NuM1 protein, partial (19%) 42 0.001
TC219167 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD pro... 42 0.001
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 42 0.001
>TC217953 similar to UP|Q9FHH9 (Q9FHH9) DNA-binding protein-like, partial
(6%)
Length = 1115
Score = 547 bits (1409), Expect = e-156
Identities = 285/392 (72%), Positives = 311/392 (78%), Gaps = 3/392 (0%)
Frame = +1
Query: 366 SGNSSTENAGSTYQVQDMESARCPQPKIPSPTSSAASKGGLKISPVYDGTTNIQDTAVET 425
SGNSS ENAGST+Q QDMESARCPQPKIPSPTSSAASKG LK+SPV + TTNIQ+T +
Sbjct: 1 SGNSSAENAGSTFQAQDMESARCPQPKIPSPTSSAASKGELKVSPVNEKTTNIQETTDDR 180
Query: 426 KVVSAPPQTSEHVKIPRAGDVSEATHESKSVKEPVSQGSAQVVEEEVQQKLVPTEAGKKK 485
K VSAP QTSE V+ PRA D+SEATHES SVKEP SQ SAQ VEEEVQQKLVPTEAGKKK
Sbjct: 181 KAVSAPQQTSEQVRNPRAADISEATHESMSVKEPASQWSAQQVEEEVQQKLVPTEAGKKK 360
Query: 486 KKKKVRMPTNDFQWKPPHDLGAENYMMQMGPPPGYNPYWNGMQPCMDGFMAPYAGPMHMM 545
KKKKVR+ ND QWK PHD GAENYMM M PPPGYN YWNGMQP MDGFMAPY PM MM
Sbjct: 361 KKKKVRLLPNDLQWKTPHDFGAENYMMPMVPPPGYNSYWNGMQP-MDGFMAPYGNPMQMM 537
Query: 546 DYGHGPYDMPFPNGMPHDPFANGMPHDPFGMQGYMMPPIPPPPHRDLAEFSMGMNVPPPA 605
YG GP DMPF GMP DPFGMQGYMMP PPHRDLA+FSMGMN PPP
Sbjct: 538 GYGLGPLDMPF----------GGMPQDPFGMQGYMMPGF--PPHRDLADFSMGMNAPPPV 681
Query: 606 MSREEFEARKADARRKRENERRVERDFSKDRDFGREVSSVGDVSSIKSKTKPIPPSSASD 665
MSREEFEARKAD RRKREN+RR ERDFSKDRDFGREVSSVGDVSS+KSKT+ IPPSS SD
Sbjct: 682 MSREEFEARKADMRRKRENDRRPERDFSKDRDFGREVSSVGDVSSMKSKTRSIPPSSGSD 861
Query: 666 YHQNRHRSERPSPDSSHREVE--PPRPTKRKSD-HSEREREDRDRDYDYHDRHQDRDYXH 722
YHQ R RSER SPD S R+VE PPRPTKRK + HS+REREDRDRDY+ H+RH
Sbjct: 862 YHQPRFRSERHSPDRSPRDVEPPPPRPTKRKLEHHSDREREDRDRDYE-HERH------- 1017
Query: 723 DRHQHRRHHHRTEASSKKSTDPVTKSTSRKSS 754
HRR HR+E+SS++S++PV K +S ++
Sbjct: 1018----HRR--HRSESSSRRSSEPVAKPSSNAAA 1095
>TC220288 similar to UP|Q9FHH9 (Q9FHH9) DNA-binding protein-like, partial
(3%)
Length = 685
Score = 149 bits (376), Expect = 5e-36
Identities = 90/130 (69%), Positives = 99/130 (75%), Gaps = 4/130 (3%)
Frame = +1
Query: 783 SAEAAAAAAADRKQKASVFSRISFPSEEEAAAAAKKRKLSASSTTE-ASTAATASVSAKA 841
+A AAAAAAADRKQKASVFSRISFP+EEE KKRK++ASSTTE A+TAA S S+
Sbjct: 4 AAAAAAAAAADRKQKASVFSRISFPAEEEPP---KKRKVTASSTTEPAATAAAPSASSAH 174
Query: 842 PSTTHLSNG---GRKSKAVMDDYESSDDDEDDERHFKRRPSRYEPSPPPPVDDWVEEGRH 898
T +SNG GRKS V D YESSDD ERHFKRRPSRYEPSPPP +W EEGRH
Sbjct: 175 LKT--VSNGYYEGRKSSGVAD-YESSDD----ERHFKRRPSRYEPSPPPQPAEWEEEGRH 333
Query: 899 SRGTRDRKHR 908
SRGTR+RKHR
Sbjct: 334 SRGTRERKHR 363
>BM187780
Length = 432
Score = 90.9 bits (224), Expect = 2e-18
Identities = 53/86 (61%), Positives = 61/86 (70%), Gaps = 3/86 (3%)
Frame = +3
Query: 656 KPIPPSSASDYHQNRHRSERPSPDSSHREVE--PPRPTKRKSD-HSEREREDRDRDYDYH 712
+ IPPSS SDYHQ R RSER SPD S R+VE PPRPTKRK + HS+REREDRDRDY+ H
Sbjct: 216 RSIPPSSGSDYHQPRFRSERHSPDRSPRDVEPPPPRPTKRKLEHHSDREREDRDRDYE-H 392
Query: 713 DRHQDRDYXHDRHQHRRHHHRTEASS 738
+RH HRR HR+E+SS
Sbjct: 393 ERH-----------HRR--HRSESSS 431
>TC234937 similar to UP|Q9FHH9 (Q9FHH9) DNA-binding protein-like, partial
(3%)
Length = 449
Score = 60.1 bits (144), Expect = 4e-09
Identities = 31/43 (72%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Frame = +1
Query: 848 SNG---GRKSKAVMDDYESSDDDEDDERHFKRRPSRYEPSPPP 887
SNG GRKS + + DYESSDD ERHFKRRPSRYEPSPPP
Sbjct: 16 SNGYYEGRKSSSAVADYESSDD----ERHFKRRPSRYEPSPPP 132
Score = 47.0 bits (110), Expect = 4e-05
Identities = 30/85 (35%), Positives = 39/85 (45%)
Frame = +2
Query: 824 SSTTEASTAATASVSAKAPSTTHLSNGGRKSKAVMDDYESSDDDEDDERHFKRRPSRYEP 883
+ TT+ AA S + +T+ SNGGR+ + RRP R
Sbjct: 20 TGTTKGGRAAAPSRTTNLATTSGTSNGGRRGTS-------------------RRPRRSRR 142
Query: 884 SPPPPVDDWVEEGRHSRGTRDRKHR 908
+W EEGRHSRGTR+RKHR
Sbjct: 143 -------EWEEEGRHSRGTRERKHR 196
>TC205762 weakly similar to UP|Q9LNV4 (Q9LNV4) F22G5.31, partial (25%)
Length = 1147
Score = 49.7 bits (117), Expect = 6e-06
Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 27/200 (13%)
Frame = +3
Query: 662 SASDYHQNRHRSERPSPDSSHREVEPPRPTKRKS------DHSEREREDRDRDYD----- 710
S S Y +R RS SPD R P ++R+S + R DR R Y
Sbjct: 360 SRSPYSSDRSRSRSYSPDYQRRRSYSPYHSRRRSYSPFYSRYRSYSRYDRHRSYSRSRSP 539
Query: 711 -------YHDR----HQDRDYXHDRHQHRRHHHRTEASSKKSTDPV-----TKSTSRKSS 754
HDR ++ R D H +RRH +R+ + S DP +S SR S+
Sbjct: 540 YSRSPVSMHDRSYSPYEIRYDSPDAHSYRRHRYRSVSRSASPDDPYYGRHRYRSVSR-SA 716
Query: 755 EPDIKSKSRKSSEPVTKSLSLSKTAPTTSAEAAAAAAADRKQKASVFSRISFPSEEEAAA 814
P + +SR+S +S + S + + + K+ R S ++
Sbjct: 717 SPRPRRRSRRSYSRSATPVSKRSNSRNVSPRSRRSHSRSSKRSGKCEKRYS----RSSSV 884
Query: 815 AAKKRKLSASSTTEASTAAT 834
A R +S S+T +++ +T
Sbjct: 885 NASSRSVSRSNTPRSTSPST 944
>TC217954
Length = 521
Score = 48.5 bits (114), Expect = 1e-05
Identities = 23/24 (95%), Positives = 24/24 (99%)
Frame = +1
Query: 632 FSKDRDFGREVSSVGDVSSIKSKT 655
FSKDRDFGREVSSVGDVSS+KSKT
Sbjct: 16 FSKDRDFGREVSSVGDVSSMKSKT 87
>TC216023 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F23H14.7
{Arabidopsis thaliana;} , partial (15%)
Length = 1437
Score = 44.7 bits (104), Expect(2) = 3e-05
Identities = 51/226 (22%), Positives = 95/226 (41%), Gaps = 41/226 (18%)
Frame = +3
Query: 697 HSEREREDRDRDYDYHDRHQDRDYXHDRHQHRRHHH--------RTEASSKKSTDPVTKS 748
H++R D D DYD D + R +HR+H H R E SSK+ T +
Sbjct: 321 HTKRSGSDSDSDYDSDDESRKTSKRSHR-KHRKHSHYDSGDHEKRKEKSSKRKTKKWSSE 497
Query: 749 TSRKSSEPDIKS--KSRKSSEPVTKSL------SLSKTAPTTSAEAAAAAAADRKQKASV 800
+S SS+ S + R+ + +K L S S +T+ E + ++Q+ S
Sbjct: 498 SSDYSSDDSESSFEEERRRKKKQSKKLRDRGSRSDSSNYDSTADELSKRKRQHKRQRPSK 677
Query: 801 FSRISFPSEEEAAAA--------AKKRKLSASSTTEAST----------------AATAS 836
FS + ++E + +K+ + S SS ++ S+ + +
Sbjct: 678 FSGSDYSTDEGDSLVQKRNHGMHSKRHRQSESSESDLSSDDAPHKKGHRKHHKHHKRSHN 857
Query: 837 VSAKAPSTTHLSNGGR-KSKAVMDDYESSDDDEDDERHFKRRPSRY 881
V + + + S+G R +SK++ E + +DE +R ++ R+
Sbjct: 858 VELRLSDSDYRSHGQRSRSKSL----EENSEDESKKRSMDKKSGRH 983
Score = 40.4 bits (93), Expect = 0.004
Identities = 27/99 (27%), Positives = 39/99 (39%)
Frame = +3
Query: 666 YHQNRHRSERPSPDSSHREVEPPRPTKRKSDHSEREREDRDRDYDYHDRHQDRDYXHDRH 725
+H+ H E DS +R +K ++SE E + R D RH + H RH
Sbjct: 837 HHKRSHNVELRLSDSDYRSHGQRSRSKSLEENSEDESKKRSMDKK-SGRHHHHRHHHHRH 1013
Query: 726 QHRRHHHRTEASSKKSTDPVTKSTSRKSSEPDIKSKSRK 764
H RHH E + + P K + E D +K
Sbjct: 1014HHHRHHLDDERNYMQQHSP--KFNGKHGEELDKTETEKK 1124
Score = 32.0 bits (71), Expect = 1.3
Identities = 23/96 (23%), Positives = 38/96 (38%)
Frame = +3
Query: 811 EAAAAAKKRKLSASSTTEASTAATASVSAKAPSTTHLSNGGRKSKAVMDDYESSDDDEDD 870
EAAA AK+RKL + T+ S + + S + S + Y+S D ++
Sbjct: 276 EAAAEAKERKLKVAKHTKRSGSDSDSDYDSDDESRKTSKRSHRKHRKHSHYDSGDHEKRK 455
Query: 871 ERHFKRRPSRYEPSPPPPVDDWVEEGRHSRGTRDRK 906
E+ KR+ ++ D E R +K
Sbjct: 456 EKSSKRKTKKWSSESSDYSSDDSESSFEEERRRKKK 563
Score = 21.9 bits (45), Expect(2) = 3e-05
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 878 PSRYEPSPPPP 888
PS PSPPPP
Sbjct: 989 PSSPPPSPPPP 1021
>TC216024 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F23H14.7
{Arabidopsis thaliana;} , partial (14%)
Length = 1433
Score = 46.2 bits (108), Expect = 6e-05
Identities = 54/252 (21%), Positives = 96/252 (37%), Gaps = 19/252 (7%)
Frame = +2
Query: 675 RPSPDSSHREVEPPRPTKRK----SDHSEREREDRDRDYDYHDRHQDRDYXHDRHQHRRH 730
+ +P +++E TK + + H +R D D D D D + + +HR+H
Sbjct: 254 KEAPLKWEQKLEAAAETKERKLKATKHKKRSGSDSDSDNDSDDESR-KTSKRSHRKHRKH 430
Query: 731 HH--------RTEASSKKSTDPVTKSTS-----RKSSEPDIKSKSRKSSEPVTKSLSLSK 777
H R E SSK+ T + TS SSE + + K + S S S
Sbjct: 431 SHYDSGDHEKRKEKSSKRKTKKSSSETSDYDDFESSSEEERRKKKQSKKLRDRGSRSDSS 610
Query: 778 TAPTTSAEAAAAAAADRKQKASVFSRISFPSEEEAAAAAKKRKLSASSTTEASTAATASV 837
+ + + E + ++Q+ S FS + +EE + K+ S S ++ + +
Sbjct: 611 DSDSIADELSKRKRHHKRQRPSKFSGSDYSTEEGDSLVRKRNHGKHSKRHRRSESSESDL 790
Query: 838 SA-KAP-STTHLSNGGRKSKAVMDDYESSDDDEDDERHFKRRPSRYEPSPPPPVDDWVEE 895
S+ AP H + ++ + SSD D + R E + +D +
Sbjct: 791 SSDDAPRKKGHRKHQKHHKRSHNVELRSSDSDYHHSHGQRSRSKSLEENS----EDESKR 958
Query: 896 GRHSRGTRDRKH 907
H + R H
Sbjct: 959 SMHKKSDRHHHH 994
Score = 45.4 bits (106), Expect = 1e-04
Identities = 43/167 (25%), Positives = 60/167 (35%), Gaps = 43/167 (25%)
Frame = +2
Query: 609 EEFEARKADARRKRENERRVERDFSKDRDFGREVSSVGDVSSIKSKTKPIPPS--SASDY 666
++FE+ + RRK++ +++ RD D S ++S K K PS S SDY
Sbjct: 521 DDFESSSEEERRKKKQSKKL-RDRGSRSDSSDSDSIADELSKRKRHHKRQRPSKFSGSDY 697
Query: 667 ----------------HQNRHR-SERPSPDSSHREVEPPRPTKRKSDHSERER--EDRDR 707
H RHR SE D S + + ++ H +R E R
Sbjct: 698 STEEGDSLVRKRNHGKHSKRHRRSESSESDLSSDDAPRKKGHRKHQKHHKRSHNVELRSS 877
Query: 708 DYDYHDRHQDR----------------------DYXHDRHQHRRHHH 732
D DYH H R D H H+H HHH
Sbjct: 878 DSDYHHSHGQRSRSKSLEENSEDESKRSMHKKSDRHHHHHRHHHHHH 1018
Score = 36.2 bits (82), Expect = 0.067
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +2
Query: 661 SSASDYHQNRHRSERPSPDSSHREVEPPRPTKRKSDHSEREREDRDRDYDYHDRHQDRDY 720
SS SDYH + + R + E E R +KSD R + +H H+ R +
Sbjct: 872 SSDSDYHHSHGQRSRSKSLEENSEDESKRSMHKKSD-----RHHHHHRHHHHHHHKHRHH 1036
Query: 721 XHDRHQHRRHH 731
D H + H
Sbjct: 1037LDDERNHMQQH 1069
>TC213615 similar to UP|Q9SUL7 (Q9SUL7) SNF1 like protein kinase
(CBL-interacting protein kinase 4), partial (45%)
Length = 674
Score = 45.4 bits (106), Expect = 1e-04
Identities = 49/175 (28%), Positives = 70/175 (40%), Gaps = 46/175 (26%)
Frame = +3
Query: 715 HQDRDYXHDRHQHRRHHH-------------RTEASSKKSTDPVTKSTS-----RKSSEP 756
H + + H R +HRR HH A+S +ST ST+ R S+ P
Sbjct: 21 HFPQQWKHRRRRHRRRHHGPPSWPSTSSRVSSAAATSLRSTRRAPSSTAPR*P*RPSTSP 200
Query: 757 ------------------------DIKSKSRKSSEPVTKSLSLSKTAP--TTSAEAAAAA 790
SKS +SS P +S S S T+P +S+ ++ AA
Sbjct: 201 RRWTPPWSPASCVRSTPCAASTTTPTSSKSTRSSPPRPRSTS-SSTSPVAASSSPSSPAA 377
Query: 791 AADRKQKASVFSRISFPSEEEAAAAAKKRKLSASSTTEASTAAT--ASVSAKAPS 843
AA R + SR S P A A A + S+ T+ ++ AT + SA PS
Sbjct: 378 AASRSPSPAATSRSSSPLSASATAMASPTETSSHRTSSSTPPATSRSPTSASPPS 542
>TC213885 weakly similar to UP|Q9VUB7 (Q9VUB7) CG32133-PA, partial (4%)
Length = 540
Score = 44.7 bits (104), Expect = 2e-04
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Frame = +1
Query: 750 SRKSSEPDIKSKSRKSSEPVTKSLSLSKTAPTTSAEAAAAAAADRKQKASVFSRISFPSE 809
S ++ P + SS T + + S A TTS+ AAAAAA+ A+ S + +
Sbjct: 7 SAAATAPADAKPTATSSAVATTAAATSHAATTTSSAAAAAAASSAATAAATSSATTAATA 186
Query: 810 EEAAAAAKKRKLSASST-TEASTAATASVSAKAPSTTHLSNGG 851
AAA+A +A+ST T +T ATA+ SA A + + G
Sbjct: 187 PAAAASATPATAAAASTSTTPTTTATAAASAVAATAATAATDG 315
Score = 32.3 bits (72), Expect = 0.96
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 736 ASSKKSTDPVTKSTSRKSSEPDIKSKSRKSSEPVTKSLSLSKTAPTTSAEAAAAAAA 792
A+S +T T S + ++ P + S+ P T + + + T PTT+A AAA+A A
Sbjct: 127 AASSAATAAATSSATTAATAP----AAAASATPATAAAASTSTTPTTTATAAASAVA 285
Score = 29.3 bits (64), Expect = 8.2
Identities = 20/94 (21%), Positives = 44/94 (46%)
Frame = +1
Query: 735 EASSKKSTDPVTKSTSRKSSEPDIKSKSRKSSEPVTKSLSLSKTAPTTSAEAAAAAAADR 794
+A ++ V + + S S + ++ + + + + ++ TT+A A AAAA+
Sbjct: 31 DAKPTATSSAVATTAAATSHAATTTSSAAAAAAASSAATAAATSSATTAATAPAAAASAT 210
Query: 795 KQKASVFSRISFPSEEEAAAAAKKRKLSASSTTE 828
A+ S + P+ AAA+ +A++ T+
Sbjct: 211 PATAAAASTSTTPTTTATAAASAVAATAATAATD 312
>BF424438
Length = 393
Score = 44.3 bits (103), Expect = 2e-04
Identities = 29/83 (34%), Positives = 37/83 (43%), Gaps = 8/83 (9%)
Frame = +2
Query: 670 RHRSERPSPDSSHREVEPPRPTKRKS--------DHSEREREDRDRDYDYHDRHQDRDYX 721
R RS +P H R + KS DH +R+R+ RDRD D DR +DRD
Sbjct: 146 RKRSPERAPRRKHSXSPRKRSRRSKSRSRDRDRRDHGDRDRDRRDRDRDRDDR-RDRDRD 322
Query: 722 HDRHQHRRHHHRTEASSKKSTDP 744
DR +R SS K+ P
Sbjct: 323 RDRKHKKRSDRSRSGSSPKTVVP 391
Score = 39.7 bits (91), Expect = 0.006
Identities = 26/85 (30%), Positives = 36/85 (41%), Gaps = 6/85 (7%)
Frame = +2
Query: 668 QNRHRSERPSPDSSHREVEPPRPTKRKSDHSERERED-----RDRDYDYHDRHQDRDYXH 722
+ R + SP+ + R P KR R R+ DRD D DR +DRD
Sbjct: 128 KERESERKRSPERAPRRKHSXSPRKRSRRSKSRSRDRDRRDHGDRDRDRRDRDRDRDDRR 307
Query: 723 DRHQHR-RHHHRTEASSKKSTDPVT 746
DR + R R H + S+ + P T
Sbjct: 308 DRDRDRDRKHKKRSDRSRSGSSPKT 382
>TC219663 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD protein {Homo
sapiens;} , partial (14%)
Length = 1176
Score = 44.3 bits (103), Expect = 2e-04
Identities = 36/131 (27%), Positives = 53/131 (39%), Gaps = 8/131 (6%)
Frame = +3
Query: 608 REEFEARKADARRKRENERRVERDFSKDRDFGREVSSVGDVSSIKSKTKPIPPSSASDYH 667
RE+ R D R R+ +R +RD +DRD R+ + + + D H
Sbjct: 369 REDRHHRDRDRNRDRDRDRERDRDRGRDRDRTRDRD--------RERGRDRDRDREYDRH 524
Query: 668 QNRHRS-ERPSPDSSHREVEPPRPTKRKSDHSER----ERED---RDRDYDYHDRHQDRD 719
+ R R E PD + +S H ER E ED R Y++ RH D D
Sbjct: 525 RERDRDYEVGDPDRGRSRDRESDYDRVESKHGERNHDYEPEDDRGRHNQYEHGRRHADPD 704
Query: 720 YXHDRHQHRRH 730
+ +R+ H H
Sbjct: 705 HDPERYDHYNH 737
Score = 38.5 bits (88), Expect = 0.013
Identities = 34/116 (29%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Frame = +3
Query: 653 SKTKPIPPSSASDYHQNRHRSERPSP----DSSHREVEPPRPTKRKSDHSEREREDRDRD 708
S+ + I D + R RS S D HRE R R D DRDR
Sbjct: 267 SRDREISRERGRDKDRERERSREHSHERVRDRDHREDRHHRDRDRNRDRDRDRERDRDRG 446
Query: 709 YDY-HDRHQDRDYXHDRHQHRRH-HHRTEASSKKSTDPVT-KSTSRKSSEPDIKSK 761
D R +DR+ DR + R + HR + DP +S R+S ++SK
Sbjct: 447 RDRDRTRDRDRERGRDRDRDREYDRHRERDRDYEVGDPDRGRSRDRESDYDRVESK 614
Score = 37.7 bits (86), Expect = 0.023
Identities = 37/160 (23%), Positives = 56/160 (34%), Gaps = 24/160 (15%)
Frame = +3
Query: 608 REEFEARKADARRKRENERRVERDFSKDRDFGREVS-----SVGDVSSIKSKTKPIPPSS 662
RE R D R R+ +R RD +DR++ R VGD +S+ +
Sbjct: 423 RERDRDRGRDRDRTRDRDRERGRDRDRDREYDRHRERDRDYEVGDPDRGRSRDRESDYDR 602
Query: 663 ASDYHQNRHRSERPSPDSSH--------REVEPPRPTKR---------KSDHSEREREDR 705
H R+ P D R +P +R DH + R+
Sbjct: 603 VESKHGERNHDYEPEDDRGRHNQYEHGRRHADPDHDPERYDHYNHGDDHGDHYNQYRDHD 782
Query: 706 DRDYDYH-DRHQDRDYXHDR-HQHRRHHHRTEASSKKSTD 743
+ DYH R + +R H R + R+E S + D
Sbjct: 783 GMEDDYHAGRATSESHEKERSHDVDREYQRSERSHSREYD 902
Score = 37.0 bits (84), Expect = 0.039
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +3
Query: 672 RSERPSPDSSHREVEPPRPTKRKSDHSEREREDRDRDYDYHDRHQDRDYXHDRHQHR 728
RS R S R + R +R +HS DRD D H R +DR+ DR + R
Sbjct: 261 RSSRDREISRERGRDKDRERERSREHSHERVRDRDHREDRHHRDRDRNRDRDRDRER 431
Score = 32.7 bits (73), Expect = 0.74
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +3
Query: 681 SHREVEPPRPTKRKSDHSEREREDRDRDYDYHDRHQDRDYXHDRHQHRRHHHR 733
S R+ E R R D RERE R R++ H+R +DRD+ DRH R +R
Sbjct: 264 SSRDREISRERGRDKD---RERE-RSREHS-HERVRDRDHREDRHHRDRDRNR 407
Score = 29.3 bits (64), Expect = 8.2
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Frame = +3
Query: 698 SERERE---DRDRDYDYHDRHQDRDYXHDR-----HQHRRHHHRTEASSKKSTD 743
S R+RE +R RD D +R + R++ H+R H+ RHH + + + D
Sbjct: 264 SSRDREISRERGRDKD-RERERSREHSHERVRDRDHREDRHHRDRDRNRDRDRD 422
>TC205461 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1_4
{Arabidopsis thaliana;} , partial (69%)
Length = 1148
Score = 44.3 bits (103), Expect = 2e-04
Identities = 42/156 (26%), Positives = 65/156 (40%), Gaps = 8/156 (5%)
Frame = +3
Query: 672 RSERPSPDSSHREVEPPRPTKRKS-----DHSEREREDRDRDYDYHDRHQDRDYXHD--- 723
RS SP HR+ R +R+S D ER+R R RD DY R + R D
Sbjct: 435 RSRSRSPRKRHRDDYRDRDYRRRSRSRSYDRYERDRH-RGRDKDYRRRSRSRSASLDYKG 611
Query: 724 RHQHRRHHHRTEASSKKSTDPVTKSTSRKSSEPDIKSKSRKSSEPVTKSLSLSKTAPTTS 783
R + R R S +S D ++S +R+S P R+S P + T+P S
Sbjct: 612 RGRGRYDDERNSRSRSRSVD--SRSPARRSPSP------RRSPSPQRSTSPQRSTSPRKS 767
Query: 784 AEAAAAAAADRKQKASVFSRISFPSEEEAAAAAKKR 819
+ A R++++ +S +A+ + R
Sbjct: 768 PRGESPANRSREERSPTPRSVSPRGRPDASRSPSPR 875
Score = 39.7 bits (91), Expect = 0.006
Identities = 36/165 (21%), Positives = 63/165 (37%), Gaps = 2/165 (1%)
Frame = +3
Query: 688 PRPTKRKSDHSEREREDRDRDYDYHDRHQDRDYXHDRHQHRRHHHRTEASSKKSTDPVTK 747
PR + +S + D RD DY R + R Y DR++ RH R + ++S
Sbjct: 423 PRSRRSRSRSPRKRHRDDYRDRDYRRRSRSRSY--DRYERDRHRGRDKDYRRRSRS---- 584
Query: 748 STSRKSSEPDIKSKSRKSSEPVTKSLSLSKTAPTTS--AEAAAAAAADRKQKASVFSRIS 805
+S+ D K + R + S S S++ + S + + + Q+++ R +
Sbjct: 585 ----RSASLDYKGRGRGRYDDERNSRSRSRSVDSRSPARRSPSPRRSPSPQRSTSPQRST 752
Query: 806 FPSEEEAAAAAKKRKLSASSTTEASTAATASVSAKAPSTTHLSNG 850
P + + R S T S + A + SNG
Sbjct: 753 SPRKSPRGESPANRSREERSPTPRSVSPRGRPDASRSPSPRNSNG 887
>TC222812
Length = 630
Score = 43.1 bits (100), Expect = 5e-04
Identities = 41/163 (25%), Positives = 67/163 (40%), Gaps = 10/163 (6%)
Frame = +2
Query: 620 RKRENERRVERDFSKDRDFGREVSSVGDVSSIKSKTKPIPPSSASDYHQNRHRSERPSPD 679
RK+ +D K + R+ SS D S + TK SS ++H++RH +
Sbjct: 2 RKKHRSSHQSQDRHKHK---RKHSSSKDKYSSRG-TKHDCSSSDDEHHRSRHHRHKYDGS 169
Query: 680 SSHREVEPPRPTKRKSDHSE---------REREDRDRDYDY-HDRHQDRDYXHDRHQHRR 729
S + R + K D S R R+D D+++ H H ++DY +HR
Sbjct: 170 SDDEQHHRSRHRRHKYDGSSDEKHHPSKRRHRDDSLSDHEHRHSHHSNKDYSSSDDEHR- 346
Query: 730 HHHRTEASSKKSTDPVTKSTSRKSSEPDIKSKSRKSSEPVTKS 772
HR+ KS + T + E +KS+ S V ++
Sbjct: 347 --HRSRNVRLKSRSRAERETELEEGEIILKSEKSVVSGEVGRA 469
>TC219166 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD protein {Homo
sapiens;} , partial (12%)
Length = 774
Score = 43.1 bits (100), Expect = 5e-04
Identities = 33/118 (27%), Positives = 45/118 (37%)
Frame = +3
Query: 614 RKADARRKRENERRVERDFSKDRDFGREVSSVGDVSSIKSKTKPIPPSSASDYHQNRHRS 673
R+AD R RE R ERD +DRD R S D K + + HRS
Sbjct: 243 RRADRDRDRERYRDRERDRDRDRD--RTKSRDRDRGRDSDKEREREEAERGKLKDRDHRS 416
Query: 674 ERPSPDSSHREVEPPRPTKRKSDHSEREREDRDRDYDYHDRHQDRDYXHDRHQHRRHH 731
+ DS H E + HS +R+ Y ++ DRH+H H+
Sbjct: 417 RERAKDSGHSE--------KSKRHSSHDRDSHGSSYSSREK--------DRHRHH*HY 542
Score = 36.2 bits (82), Expect = 0.067
Identities = 32/86 (37%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Frame = +3
Query: 693 RKSDHSEREREDRDRDYD-YHDRHQDRDYXHDRHQHR---------RHHHRTEASSKKST 742
RK + ER R DRDRD + Y DR +DRD DR + R + R EA K
Sbjct: 222 RKIEAIER-RADRDRDRERYRDRERDRDRDRDRTKSRDRDRGRDSDKEREREEAERGKLK 398
Query: 743 DPVTKSTSR-KSSEPDIKSKSRKSSE 767
D +S R K S KSK S +
Sbjct: 399 DRDHRSRERAKDSGHSEKSKRHSSHD 476
>TC212455 weakly similar to UP|Q7QIA8 (Q7QIA8) AgCP3984 (Fragment), partial
(11%)
Length = 944
Score = 43.1 bits (100), Expect = 5e-04
Identities = 40/172 (23%), Positives = 64/172 (36%), Gaps = 13/172 (7%)
Frame = +1
Query: 609 EEFEARKADARRKRENERRVERDFSKDRDFGREVSSVGDVSSIKSKTKPIPPSSASDYHQ 668
+E E + + + R RD KDR RE GD K + + S +
Sbjct: 331 KEIEWEHKRGKERERSRERYRRDAEKDRS--REREEDGDRRQEKERDR-----SWDTVFE 489
Query: 669 NRHRSERPSPDSSHREVEPPRPTKRKSDHSEREREDRDRDY-----------DYHDRHQD 717
R E+ S R + R +++ ++ RE RD Y D H RH+D
Sbjct: 490 RDRRREKERDRSRDRTIGGKRDRDPENERDDKNRERRDDRYGHKDRDTANGKDRHLRHED 669
Query: 718 RDYXHDRHQHRRHHHRTEA--SSKKSTDPVTKSTSRKSSEPDIKSKSRKSSE 767
+ DR++ H E K+++D K + S ++ SSE
Sbjct: 670 GNDNGDRYRKHSRHEENEYHWERKRNSDNPVKVYNSMGSTAEVDESKLTSSE 825
>TC206441
Length = 989
Score = 43.1 bits (100), Expect = 5e-04
Identities = 40/192 (20%), Positives = 69/192 (35%), Gaps = 16/192 (8%)
Frame = +1
Query: 674 ERPSPDSSHREVEPPRPTKRKSDHS-----EREREDRDRDYDYHDRHQDRDYXHDRHQHR 728
E+P P S+ E K S E E+ D + + D R Q+
Sbjct: 124 EKPEPVSTPVAAEVDESQKEPEKQSLEQRVEEEKPDTSVVPQHSEESGDATEVKTREQNE 303
Query: 729 RHHHRTEASSKKSTDPVTKSTSRKSSEPDIKSKSRKSSEPVTKSLS-----------LSK 777
TEA+ D V + +E ++ SR +EPV ++L+ K
Sbjct: 304 AKAATTEAAESVKVDKVVDDKKEEKTETKVEEISRAINEPVRETLASKFEEESVEPGADK 483
Query: 778 TAPTTSAEAAAAAAADRKQKASVFSRISFPSEEEAAAAAKKRKLSASSTTEASTAATASV 837
+ E K+ + + P E A A K+ S ++ A ++
Sbjct: 484 VEKEQTVEPEKTEVQATKENDATKTSKDLPKETPAKPAQKQSNNIISKVKQSLVKAKKAI 663
Query: 838 SAKAPSTTHLSN 849
+ K+PS+ +LS+
Sbjct: 664 TGKSPSSKNLSS 699
>TC218783 similar to UP|Q40363 (Q40363) NuM1 protein, partial (19%)
Length = 870
Score = 42.4 bits (98), Expect = 0.001
Identities = 58/264 (21%), Positives = 99/264 (36%), Gaps = 1/264 (0%)
Frame = +3
Query: 618 ARRKRENERRVERDFSKDRDFGREVSSVGDVSSIKSKTKPIPPSSASDYHQNRHRSERPS 677
A +K+ NE +V++ G+E SS D SS KP +A ++++S +
Sbjct: 18 ATKKQMNEVKVQK--------GKEESSSDDSSSDSEDEKP----AAKVAVPSKNQSAKNG 161
Query: 678 PDSSHREVEPPRPTKRKSDHSEREREDRDRDYDYHDRHQDRDYXHDRHQHRRHHHRTEAS 737
S+ + P + S+ S D + D D AS
Sbjct: 162 TLSTLAKKGKPAASSSSSESS--------------DDNSDEDEAPKTKVAPAAGKNGHAS 299
Query: 738 SKKSTDPVTKSTSRKSSEPDIKSKSRKSSEPVTKSLSLSKTAPTTSAEAAAAAAADRKQK 797
+KK T P S S S + + +P T L AP E++ +++ +
Sbjct: 300 TKK-TQPSESSDSDSSDSDSSSDEGKSKKKPTTAKLPTLPVAPAKKVESSDDESSESSDE 476
Query: 798 ASVFSRISFPSEEEAAAAAKKRKLSASSTTEASTAATASVSAKAPSTTHLSNGGRKSKAV 857
+ + +A A KK + S S + + ++ S +K KAV
Sbjct: 477 DNDAKPAVTAVSKPSARAQKKVESSDSDDSSSDEDKGKMDIDDDDDSSDESEEPQKKKAV 656
Query: 858 MDDYESSD-DDEDDERHFKRRPSR 880
+ ESSD +ED E + +PS+
Sbjct: 657 KNSKESSDSSEEDSEDESEEKPSK 728
>TC219167 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD protein {Homo
sapiens;} , partial (11%)
Length = 600
Score = 42.4 bits (98), Expect = 0.001
Identities = 33/107 (30%), Positives = 41/107 (37%)
Frame = +3
Query: 614 RKADARRKRENERRVERDFSKDRDFGREVSSVGDVSSIKSKTKPIPPSSASDYHQNRHRS 673
R D R RE +R ERD +DRD R S D K + + HRS
Sbjct: 174 RNRDRDRDRERDRGRERDRDRDRD--RTKSRDRDRGRDSDKEREREEAERDKLKDRGHRS 347
Query: 674 ERPSPDSSHREVEPPRPTKRKSDHSEREREDRDRDYDYHDRHQDRDY 720
+ DS H E +KR S H R++D H H R Y
Sbjct: 348 RERAKDSGHSE-----KSKRHSSHDRVSYSSREKDRHRHH*H*FRGY 473
Score = 42.0 bits (97), Expect = 0.001
Identities = 35/117 (29%), Positives = 48/117 (40%), Gaps = 1/117 (0%)
Frame = +3
Query: 615 KADARRKRENERRVERDFSKDRDFGREVSSVGDVSSIKSKTKPIPPSSASDYHQNRHRSE 674
K+ A E R +RD ++RD GRE D KS+ + SD + R +E
Sbjct: 141 KSKADHIGETRRNRDRDRDRERDRGRERDRDRDRDRTKSRDR--DRGRDSDKEREREEAE 314
Query: 675 RPS-PDSSHREVEPPRPTKRKSDHSEREREDRDRDYDYHDRHQDRDYXHDRHQHRRH 730
R D HR R + S HSE+ + + HDR DRH+H H
Sbjct: 315 RDKLKDRGHRS----RERAKDSGHSEKSKR-----HSSHDRVSYSSREKDRHRHH*H 458
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/110 (28%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Frame = -3
Query: 745 VTKSTSRKSSEPDIKSKSRKSSEPVTKSLSLSKTAP-----TTSAEAAAAAAADRKQKAS 799
V KS+S S S S SSE ++SLS S +P +S+ +++++++ +S
Sbjct: 576 VPKSSSSPCSSSSSSSSSSSSSESSSESLSSSSGSPPRWTSPSSSSSSSSSSSPPSGASS 397
Query: 800 VFSRISFPSEEEAAAAAKKRKLSASSTTEASTAATASVSAKAPSTTHLSN 849
S +S PS +++++ S+SS+ ++T++T S S+ + ST L++
Sbjct: 396 SSSSLSSPSSSSSSSSS-----SSSSSASSTTSSTDSYSSSSSSTKTLTS 262
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.312 0.130 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,371,103
Number of Sequences: 63676
Number of extensions: 762961
Number of successful extensions: 9011
Number of sequences better than 10.0: 352
Number of HSP's better than 10.0 without gapping: 6879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8448
length of query: 908
length of database: 12,639,632
effective HSP length: 106
effective length of query: 802
effective length of database: 5,889,976
effective search space: 4723760752
effective search space used: 4723760752
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC119408.8